Wall clock time and date at job start Fri Apr 10 2020 23:06:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43204 * 179.97438 * 2 1 4 4 C 1.39708 * 120.20053 * 62.51523 * 3 2 1 5 5 C 1.37818 * 119.91386 * 179.97438 * 4 3 2 6 6 C 1.38550 * 120.33043 * 359.97438 * 5 4 3 7 7 C 1.38051 * 120.41137 * 0.02562 * 6 5 4 8 8 C 1.38814 * 120.07826 * 359.97438 * 7 6 5 9 9 N 1.39332 * 120.16496 * 179.97438 * 8 7 6 10 10 C 1.34767 * 120.00381 * 313.23199 * 9 8 7 11 11 S 1.71202 * 119.99854 * 4.75608 * 10 9 8 12 12 N 1.34775 * 120.00612 * 184.75559 * 10 9 8 13 13 C 1.46925 * 120.62617 * 4.89366 * 12 10 9 14 14 C 1.52760 * 109.00914 * 233.58463 * 13 12 10 15 15 C 1.53040 * 109.38455 * 305.59155 * 14 13 12 16 16 C 1.50704 * 109.44928 * 181.25356 * 15 14 13 17 17 H 1.07998 * 119.99834 * 239.93421 * 16 15 14 18 18 C 1.37872 * 120.00182 * 59.93658 * 16 15 14 19 19 N 1.31522 * 120.00097 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 120.00400 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47183 * 89.99626 * 20 18 16 22 22 H 1.48491 * 109.47756 * 210.00268 * 20 18 16 23 23 H 1.48500 * 109.47010 * 330.00237 * 20 18 16 24 24 C 1.53036 * 109.53979 * 61.23739 * 15 14 13 25 25 C 1.46929 * 120.63442 * 185.17918 * 12 10 9 26 26 H 1.07999 * 120.04187 * 359.97438 * 4 3 2 27 27 H 1.07998 * 119.83148 * 180.27614 * 5 4 3 28 28 H 1.07999 * 119.79085 * 179.97438 * 6 5 4 29 29 H 1.08005 * 119.95958 * 180.02562 * 7 6 5 30 30 H 0.97007 * 119.99993 * 133.23997 * 9 8 7 31 31 H 1.09001 * 109.58702 * 353.42022 * 13 12 10 32 32 H 1.08997 * 109.58965 * 113.84652 * 13 12 10 33 33 H 1.09005 * 109.56632 * 185.55163 * 14 13 12 34 34 H 1.09007 * 109.38720 * 65.52010 * 14 13 12 35 35 H 1.09004 * 109.45762 * 301.21501 * 15 14 13 36 36 H 0.96994 * 119.99840 * 180.02562 * 19 18 16 37 37 H 1.09000 * 109.49738 * 178.68278 * 24 15 14 38 38 H 1.08998 * 109.52149 * 58.60133 * 24 15 14 39 39 H 1.09002 * 109.58250 * 246.15310 * 25 12 10 40 40 H 1.09001 * 109.58650 * 6.43165 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2710 -0.5563 -1.0712 5 6 4.6492 -0.5520 -1.0653 6 6 5.3426 0.0027 -0.0018 7 6 4.6616 0.5567 1.0636 8 6 3.2736 0.5616 1.0753 9 7 2.5844 1.1198 2.1500 10 6 2.9465 0.8182 3.4126 11 16 4.3274 -0.1526 3.6983 12 7 2.2217 1.2808 4.4504 13 6 0.9755 2.0243 4.2206 14 6 1.0470 3.3570 4.9638 15 6 1.3629 3.0996 6.4390 16 6 1.4033 4.4114 7.1798 17 1 2.3072 4.7187 7.6848 18 6 0.2865 5.2192 7.2129 19 7 -0.8144 4.8447 6.5984 20 14 0.3364 6.8448 8.1317 21 1 0.7818 7.9207 7.2103 22 1 -1.0191 7.1640 8.6470 23 1 1.2864 6.7419 9.2684 24 6 2.7212 2.4048 6.5579 25 6 2.6658 1.0565 5.8329 26 1 2.7352 -0.9896 -1.9027 27 1 5.1913 -0.9789 -1.8961 28 1 6.4226 0.0010 -0.0060 29 1 5.2095 0.9876 1.8886 30 1 1.8439 1.7254 1.9894 31 1 0.8515 2.2088 3.1535 32 1 0.1306 1.4458 4.5940 33 1 0.0903 3.8729 4.8812 34 1 1.8318 3.9739 4.5259 35 1 0.5902 2.4629 6.8700 36 1 -1.5999 5.4132 6.6214 37 1 2.9561 2.2429 7.6098 38 1 3.4909 3.0299 6.1052 39 1 1.9615 0.3973 6.3405 40 1 3.6557 0.6002 5.8292 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000781542799.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:06:38 Heat of formation + Delta-G solvation = 66.842693 kcal Electronic energy + Delta-G solvation = -23267.126483 eV Core-core repulsion = 19979.629285 eV Total energy + Delta-G solvation = -3287.497197 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.110 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.70504 -40.33778 -37.85563 -37.53827 -35.64032 -33.40647 -32.34552 -32.28492 -30.70850 -28.40348 -26.01156 -25.03716 -24.46941 -23.74821 -22.51157 -21.10310 -20.27287 -19.36086 -18.75072 -18.34225 -17.26043 -16.72295 -16.53289 -16.13122 -15.73094 -15.65365 -15.22650 -15.06101 -14.93668 -14.65282 -14.51662 -14.22582 -14.11314 -13.88103 -13.51061 -13.23222 -13.10650 -12.84671 -12.59379 -12.58637 -12.43107 -12.26259 -12.21928 -12.06692 -11.58198 -11.15838 -10.98148 -10.62041 -10.46296 -9.98466 -9.44273 -8.95436 -8.29454 -8.14607 -6.27478 -0.40549 0.14759 0.55107 0.73476 1.38628 1.42074 1.43497 1.46229 1.50118 1.91047 1.97484 2.40106 2.74710 2.91143 3.12967 3.62160 3.88398 3.97841 4.08298 4.18266 4.20936 4.27100 4.36960 4.47221 4.49349 4.53164 4.74039 4.80782 4.90988 4.97637 5.08260 5.15456 5.20879 5.28634 5.36221 5.48619 5.56249 5.60079 5.66930 5.87826 5.92326 6.01316 6.10232 6.30513 6.31032 6.82028 7.41416 8.88770 Molecular weight = 315.11amu Principal moments of inertia in cm(-1) A = 0.019967 B = 0.003418 C = 0.003152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.990209 B = 8190.751125 C = 8880.560771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.456 5.456 2 C 0.268 3.732 3 C -0.052 4.052 4 C -0.060 4.060 5 C -0.103 4.103 6 C -0.076 4.076 7 C -0.084 4.084 8 C 0.158 3.842 9 N -0.637 5.637 10 C 0.570 3.430 11 S -0.683 6.683 12 N -0.540 5.540 13 C 0.101 3.899 14 C -0.113 4.113 15 C 0.044 3.956 16 C -0.531 4.531 17 H 0.052 0.948 18 C 0.018 3.982 19 N -0.913 5.913 20 Si 0.948 3.052 21 H -0.278 1.278 22 H -0.286 1.286 23 H -0.270 1.270 24 C -0.111 4.111 25 C 0.108 3.892 26 H 0.161 0.839 27 H 0.173 0.827 28 H 0.159 0.841 29 H 0.137 0.863 30 H 0.412 0.588 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.086 0.914 34 H 0.036 0.964 35 H 0.007 0.993 36 H 0.261 0.739 37 H 0.076 0.924 38 H 0.049 0.951 39 H 0.083 0.917 40 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.025 -8.724 -16.153 20.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.132 5.132 2 C -0.046 4.046 3 C -0.059 4.059 4 C -0.082 4.082 5 C -0.121 4.121 6 C -0.097 4.097 7 C -0.107 4.107 8 C 0.062 3.938 9 N -0.266 5.266 10 C 0.209 3.791 11 S -0.550 6.550 12 N -0.244 5.244 13 C -0.023 4.023 14 C -0.151 4.151 15 C 0.026 3.974 16 C -0.569 4.569 17 H 0.070 0.930 18 C -0.181 4.181 19 N -0.553 5.553 20 Si 0.774 3.226 21 H -0.204 1.204 22 H -0.211 1.211 23 H -0.195 1.195 24 C -0.149 4.149 25 C -0.014 4.014 26 H 0.178 0.822 27 H 0.191 0.809 28 H 0.176 0.824 29 H 0.155 0.845 30 H 0.254 0.746 31 H 0.101 0.899 32 H 0.102 0.898 33 H 0.104 0.896 34 H 0.055 0.945 35 H 0.025 0.975 36 H 0.071 0.929 37 H 0.095 0.905 38 H 0.068 0.932 39 H 0.102 0.898 40 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 8.857 -9.250 -15.830 20.362 hybrid contribution -1.317 1.948 0.778 2.477 sum 7.540 -7.302 -15.052 18.350 Atomic orbital electron populations 1.81309 1.13102 1.09884 1.08858 1.25975 0.92935 0.92912 0.92794 1.16069 0.83138 1.07337 0.99335 1.21313 0.95055 0.95968 0.95833 1.21548 0.92940 0.98252 0.99353 1.21597 1.01979 0.94702 0.91395 1.21492 0.91378 0.99134 0.98657 1.17501 0.91928 0.98566 0.85818 1.42246 1.35551 1.46426 1.02360 1.22122 0.89856 0.84867 0.82241 1.93167 1.21373 1.49499 1.91004 1.47602 1.21553 1.48804 1.06408 1.22133 0.84840 0.94669 1.00682 1.21743 1.02920 0.93394 0.97083 1.18642 0.92186 0.94441 0.92180 1.21512 0.97872 1.04970 1.32573 0.93004 1.25623 0.95250 1.00977 0.96227 1.69921 1.02634 1.38645 1.44099 0.85707 0.77213 0.80500 0.79156 1.20366 1.21148 1.19511 1.21866 0.98772 0.94287 0.99976 1.22394 1.03632 0.98540 0.76823 0.82172 0.80927 0.82356 0.84487 0.74618 0.89892 0.89827 0.89624 0.94540 0.97497 0.92941 0.90545 0.93204 0.89847 0.86275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -12.95 18.54 19.00 0.35 -12.60 16 2 C 0.27 6.33 14.62 88.33 1.29 7.63 16 3 C -0.05 -1.01 5.75 -21.17 -0.12 -1.13 16 4 C -0.06 -0.73 9.75 22.53 0.22 -0.51 16 5 C -0.10 -0.92 10.02 22.24 0.22 -0.70 16 6 C -0.08 -0.99 10.03 22.30 0.22 -0.77 16 7 C -0.08 -1.75 7.86 22.36 0.18 -1.57 16 8 C 0.16 3.57 5.90 38.59 0.23 3.79 16 9 N -0.64 -16.45 4.71 -189.37 -0.89 -17.35 16 10 C 0.57 17.57 7.58 179.06 1.36 18.93 16 11 S -0.68 -23.44 24.18 -56.49 -1.37 -24.81 16 12 N -0.54 -17.21 2.98 -707.75 -2.11 -19.32 16 13 C 0.10 3.27 6.40 86.22 0.55 3.83 16 14 C -0.11 -4.61 5.14 30.53 0.16 -4.46 16 15 C 0.04 1.97 2.07 -11.51 -0.02 1.95 16 16 C -0.53 -27.16 8.56 25.60 0.22 -26.94 16 17 H 0.05 2.65 7.74 -2.91 -0.02 2.62 16 18 C 0.02 0.95 5.30 84.65 0.45 1.39 16 19 N -0.91 -48.90 11.31 21.45 0.24 -48.66 16 20 Si 0.95 41.59 29.54 68.60 2.03 43.62 16 21 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 22 H -0.29 -12.45 7.11 99.48 0.71 -11.74 16 23 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 24 C -0.11 -4.13 5.30 30.67 0.16 -3.96 16 25 C 0.11 3.53 6.31 86.36 0.54 4.07 16 26 H 0.16 1.11 8.06 -2.91 -0.02 1.09 16 27 H 0.17 0.29 8.06 -2.91 -0.02 0.27 16 28 H 0.16 1.28 8.06 -2.91 -0.02 1.26 16 29 H 0.14 3.45 6.22 -6.11 -0.04 3.41 16 30 H 0.41 9.88 6.02 -92.70 -0.56 9.32 16 31 H 0.08 2.28 5.57 -2.39 -0.01 2.26 16 32 H 0.08 2.74 8.14 -2.39 -0.02 2.72 16 33 H 0.09 4.03 6.03 -2.38 -0.01 4.01 16 34 H 0.04 1.51 8.14 -2.38 -0.02 1.49 16 35 H 0.01 0.34 8.14 -2.38 -0.02 0.32 16 36 H 0.26 13.49 8.31 -92.71 -0.77 12.72 16 37 H 0.08 2.75 8.14 -2.39 -0.02 2.73 16 38 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 39 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 40 H 0.12 3.92 6.00 -3.29 -0.02 3.90 16 Total: -1.00 -63.32 342.08 4.41 -58.91 By element: Atomic # 1 Polarization: 18.16 SS G_CDS: 0.50 Total: 18.65 kcal Atomic # 6 Polarization: -4.11 SS G_CDS: 5.66 Total: 1.55 kcal Atomic # 7 Polarization: -95.52 SS G_CDS: -2.40 Total: -97.92 kcal Atomic # 14 Polarization: 41.59 SS G_CDS: 2.03 Total: 43.62 kcal Atomic # 16 Polarization: -23.44 SS G_CDS: -1.37 Total: -24.81 kcal Total: -63.32 4.41 -58.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000781542799.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.755 kcal (2) G-P(sol) polarization free energy of solvation -63.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.912 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds