Wall clock time and date at job start Fri Apr 10 2020 23:06:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31294 * 1 3 3 Si 1.86803 * 120.00005 * 2 1 4 4 H 1.48498 * 109.47174 * 270.00222 * 3 2 1 5 5 H 1.48501 * 109.47062 * 30.00173 * 3 2 1 6 6 H 1.48504 * 109.46913 * 149.99972 * 3 2 1 7 7 C 1.38992 * 120.00157 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99846 * 179.97438 * 7 2 1 9 9 N 1.37320 * 119.99664 * 0.27652 * 7 2 1 10 10 C 1.36499 * 126.06669 * 179.72504 * 9 7 2 11 11 C 1.35682 * 107.50321 * 179.97438 * 10 9 7 12 12 N 1.40597 * 126.07675 * 179.97438 * 11 10 9 13 13 C 1.34777 * 119.99674 * 180.02562 * 12 11 10 14 14 O 1.21299 * 120.00579 * 359.97438 * 13 12 11 15 15 C 1.50705 * 119.99695 * 179.97438 * 13 12 11 16 16 F 1.39896 * 109.47245 * 324.99455 * 15 13 12 17 17 F 1.39904 * 109.46906 * 84.99471 * 15 13 12 18 18 C 1.52997 * 109.47254 * 204.99475 * 15 13 12 19 19 O 1.42902 * 110.01528 * 59.29871 * 18 15 13 20 20 C 1.54271 * 110.03229 * 297.91242 * 18 15 13 21 21 C 1.54970 * 104.15673 * 217.13338 * 20 18 15 22 22 C 1.54885 * 102.77800 * 37.88661 * 21 20 18 23 23 C 1.53869 * 110.03798 * 180.68936 * 18 15 13 24 24 C 1.40648 * 107.84125 * 359.97438 * 11 10 9 25 25 N 1.30907 * 108.38289 * 359.75556 * 24 11 10 26 26 H 0.96996 * 120.00263 * 359.97438 * 1 2 3 27 27 H 1.07994 * 126.24645 * 359.93988 * 10 9 7 28 28 H 0.96997 * 120.00477 * 359.97438 * 12 11 10 29 29 H 0.96701 * 114.00230 * 300.69976 * 19 18 15 30 30 H 1.08996 * 110.48569 * 335.77744 * 20 18 15 31 31 H 1.08993 * 110.48874 * 98.42406 * 20 18 15 32 32 H 1.09001 * 110.72089 * 279.56819 * 21 20 18 33 33 H 1.09006 * 110.76223 * 156.22121 * 21 20 18 34 34 H 1.09002 * 110.48588 * 203.40350 * 22 21 20 35 35 H 1.09001 * 110.48668 * 80.76012 * 22 21 20 36 36 H 1.08998 * 110.03775 * 238.56994 * 23 18 15 37 37 H 1.09004 * 110.02641 * 0.02562 * 23 18 15 38 38 H 1.08000 * 125.80726 * 179.97438 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3129 0.0000 0.0000 3 14 2.2470 1.6178 0.0000 4 1 2.4944 2.0465 -1.4001 5 1 1.4444 2.6527 0.7001 6 1 3.5445 1.4401 0.7001 7 6 2.0079 -1.2037 -0.0005 8 1 3.0880 -1.2036 -0.0010 9 7 1.3213 -2.3929 -0.0068 10 6 1.8750 -3.6405 -0.0134 11 6 0.8578 -4.5384 -0.0175 12 7 0.9891 -5.9382 -0.0252 13 6 -0.1101 -6.7181 -0.0292 14 8 -1.2127 -6.2124 -0.0257 15 6 0.0306 -8.2185 -0.0380 16 9 1.1494 -8.5775 -0.7973 17 9 0.1894 -8.6797 1.2733 18 6 -1.2237 -8.8448 -0.6505 19 8 -1.4061 -8.3687 -1.9855 20 6 -2.4590 -8.5002 0.2068 21 6 -3.3249 -9.7845 0.1576 22 6 -2.2659 -10.9137 0.2082 23 6 -1.1011 -10.3786 -0.6502 24 6 -0.3513 -3.8199 -0.0128 25 7 -0.0715 -2.5411 -0.0008 26 1 -0.4850 0.8400 0.0004 27 1 2.9301 -3.8708 -0.0155 28 1 1.8707 -6.3427 -0.0284 29 1 -1.5008 -7.4086 -2.0512 30 1 -2.1623 -8.2795 1.2321 31 1 -2.9998 -7.6579 -0.2245 32 1 -3.8944 -9.8303 -0.7706 33 1 -3.9874 -9.8373 1.0216 34 1 -2.6663 -11.8317 -0.2219 35 1 -1.9376 -11.0832 1.2337 36 1 -1.1816 -10.7600 -1.6681 37 1 -0.1480 -10.6768 -0.2132 38 1 -1.3419 -4.2500 -0.0149 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000786016464.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:06:40 Heat of formation + Delta-G solvation = -99.382508 kcal Electronic energy + Delta-G solvation = -27103.773972 eV Core-core repulsion = 22812.086308 eV Total energy + Delta-G solvation = -4291.687664 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.118 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.30399 -47.26034 -40.24794 -39.39098 -38.26008 -35.07097 -34.51993 -33.31980 -30.47568 -29.83500 -28.98977 -28.08712 -25.97119 -24.67908 -21.63622 -21.26764 -20.77205 -20.16846 -19.64466 -18.22443 -18.08919 -17.68476 -17.30335 -16.10963 -15.68200 -15.58494 -15.26270 -15.02691 -14.55496 -14.40670 -14.02885 -13.93033 -13.61723 -13.41642 -13.25700 -13.23556 -12.96085 -12.83319 -12.66003 -11.88980 -11.77415 -11.62640 -11.35905 -11.34329 -11.32526 -11.03366 -10.89763 -10.71820 -10.59901 -10.43936 -10.24990 -9.42508 -9.31608 -8.96819 -8.21308 -6.91246 -6.66801 -4.35442 2.19233 2.75536 2.91727 3.00393 3.05098 3.48773 3.51479 3.72698 3.78816 3.90249 4.21377 4.28887 4.40281 4.58828 4.75340 4.85686 4.91814 4.94044 5.22627 5.30836 5.43868 5.49893 5.68088 5.72636 5.89764 5.89956 6.10291 6.17924 6.19749 6.24003 6.62995 6.79252 6.81132 7.08263 7.39922 7.69755 7.82861 8.06216 8.24858 8.58366 9.22834 9.51033 10.28872 Molecular weight = 315.12amu Principal moments of inertia in cm(-1) A = 0.035155 B = 0.003087 C = 0.002964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.286135 B = 9067.888121 C = 9445.795745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.766 5.766 2 C 0.046 3.954 3 Si 0.937 3.063 4 H -0.270 1.270 5 H -0.275 1.275 6 H -0.263 1.263 7 C -0.322 4.322 8 H 0.119 0.881 9 N -0.137 5.137 10 C -0.077 4.077 11 C -0.073 4.073 12 N -0.592 5.592 13 C 0.462 3.538 14 O -0.504 6.504 15 C 0.258 3.742 16 F -0.185 7.185 17 F -0.177 7.177 18 C 0.114 3.886 19 O -0.538 6.538 20 C -0.135 4.135 21 C -0.123 4.123 22 C -0.122 4.122 23 C -0.112 4.112 24 C -0.026 4.026 25 N -0.259 5.259 26 H 0.277 0.723 27 H 0.149 0.851 28 H 0.404 0.596 29 H 0.388 0.612 30 H 0.080 0.920 31 H 0.095 0.905 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.089 0.911 37 H 0.077 0.923 38 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.775 -16.271 0.008 16.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.392 5.392 2 C -0.171 4.171 3 Si 0.760 3.240 4 H -0.195 1.195 5 H -0.200 1.200 6 H -0.187 1.187 7 C -0.454 4.454 8 H 0.136 0.864 9 N 0.097 4.903 10 C -0.229 4.229 11 C -0.179 4.179 12 N -0.232 5.232 13 C 0.243 3.757 14 O -0.381 6.381 15 C 0.218 3.782 16 F -0.165 7.165 17 F -0.158 7.158 18 C 0.071 3.929 19 O -0.346 6.346 20 C -0.173 4.173 21 C -0.160 4.160 22 C -0.160 4.160 23 C -0.150 4.150 24 C -0.201 4.201 25 N -0.090 5.090 26 H 0.087 0.913 27 H 0.166 0.834 28 H 0.238 0.762 29 H 0.239 0.761 30 H 0.099 0.901 31 H 0.113 0.887 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.107 0.893 37 H 0.096 0.904 38 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -2.149 -15.181 -0.100 15.332 hybrid contribution 1.646 0.173 0.237 1.672 sum -0.503 -15.007 0.137 15.016 Atomic orbital electron populations 1.70203 1.06188 1.28267 1.34574 1.25676 0.95750 1.00409 0.95301 0.85789 0.79412 0.79685 0.79079 1.19476 1.19985 1.18715 1.19947 0.91795 0.80430 1.53243 0.86383 1.44603 1.04099 1.03373 1.38234 1.21278 0.96963 0.85227 1.19404 1.17248 0.94731 0.80325 1.25563 1.42454 1.08200 1.05149 1.67413 1.20347 0.86030 0.87324 0.82028 1.90665 1.24887 1.72729 1.49851 1.22369 0.87076 0.92630 0.76152 1.93040 1.54720 1.93075 1.75711 1.93052 1.96063 1.89907 1.36800 1.22577 0.90688 0.95316 0.84294 1.86541 1.94651 1.28914 1.24455 1.23029 0.94652 0.99018 1.00579 1.22525 0.97365 0.93925 1.02218 1.22370 0.95147 0.98484 0.99977 1.22164 1.00040 0.90331 1.02453 1.24095 0.97795 0.90800 1.07418 1.78293 0.90082 1.14864 1.25771 0.91267 0.83395 0.76172 0.76141 0.90115 0.88686 0.90983 0.91018 0.90987 0.91085 0.89277 0.90405 0.80613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -20.77 11.81 55.50 0.66 -20.12 16 2 C 0.05 1.16 5.50 -17.50 -0.10 1.07 16 3 Si 0.94 18.37 29.55 -169.99 -5.02 13.34 16 4 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 5 H -0.27 -5.36 7.11 56.52 0.40 -4.95 16 6 H -0.26 -4.94 7.11 56.52 0.40 -4.54 16 7 C -0.32 -8.26 10.25 -14.81 -0.15 -8.41 16 8 H 0.12 2.70 7.83 -52.49 -0.41 2.29 16 9 N -0.14 -3.64 3.74 -11.41 -0.04 -3.68 16 10 C -0.08 -1.77 11.49 -16.39 -0.19 -1.96 16 11 C -0.07 -1.63 6.90 -83.84 -0.58 -2.21 16 12 N -0.59 -10.54 5.40 -10.00 -0.05 -10.60 16 13 C 0.46 7.85 6.52 -10.98 -0.07 7.78 16 14 O -0.50 -9.39 10.36 4.77 0.05 -9.34 16 15 C 0.26 3.70 1.24 -27.88 -0.03 3.66 16 16 F -0.18 -2.61 16.08 2.25 0.04 -2.57 16 17 F -0.18 -2.52 15.80 2.25 0.04 -2.48 16 18 C 0.11 1.48 0.65 -89.50 -0.06 1.43 16 19 O -0.54 -7.46 12.83 -36.00 -0.46 -7.92 16 20 C -0.14 -1.68 4.40 -25.03 -0.11 -1.79 16 21 C -0.12 -1.21 6.91 -24.70 -0.17 -1.38 16 22 C -0.12 -1.11 6.83 -25.07 -0.17 -1.28 16 23 C -0.11 -1.22 5.90 -25.62 -0.15 -1.37 16 24 C -0.03 -0.64 10.85 -17.04 -0.18 -0.82 16 25 N -0.26 -7.27 10.40 30.80 0.32 -6.95 16 26 H 0.28 6.85 8.31 -40.82 -0.34 6.51 16 27 H 0.15 2.82 8.06 -52.49 -0.42 2.40 16 28 H 0.40 6.02 8.38 -40.82 -0.34 5.68 16 29 H 0.39 5.26 7.44 45.56 0.34 5.60 16 30 H 0.08 1.07 7.26 -51.93 -0.38 0.69 16 31 H 0.09 1.28 7.24 -51.93 -0.38 0.90 16 32 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.09 0.95 7.95 -51.93 -0.41 0.53 16 37 H 0.08 0.82 7.32 -51.93 -0.38 0.44 16 38 H 0.18 4.23 5.92 -52.49 -0.31 3.92 16 LS Contribution 323.00 15.07 4.87 4.87 Total: -1.00 -30.20 323.00 -5.10 -35.30 By element: Atomic # 1 Polarization: 18.95 SS G_CDS: -3.52 Total: 15.43 kcal Atomic # 6 Polarization: -3.32 SS G_CDS: -1.97 Total: -5.29 kcal Atomic # 7 Polarization: -42.22 SS G_CDS: 0.88 Total: -41.34 kcal Atomic # 8 Polarization: -16.85 SS G_CDS: -0.41 Total: -17.26 kcal Atomic # 9 Polarization: -5.13 SS G_CDS: 0.07 Total: -5.05 kcal Atomic # 14 Polarization: 18.37 SS G_CDS: -5.02 Total: 13.34 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -30.20 -5.10 -35.30 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000786016464.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.079 kcal (2) G-P(sol) polarization free energy of solvation -30.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds