Wall clock time and date at job start Fri Apr 10 2020 23:06:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31294 * 1 3 3 Si 1.86803 * 120.00005 * 2 1 4 4 H 1.48498 * 109.47174 * 270.00222 * 3 2 1 5 5 H 1.48501 * 109.47062 * 30.00173 * 3 2 1 6 6 H 1.48504 * 109.46913 * 149.99972 * 3 2 1 7 7 C 1.38992 * 120.00157 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99846 * 179.97438 * 7 2 1 9 9 N 1.37320 * 119.99664 * 0.27652 * 7 2 1 10 10 C 1.36499 * 126.06669 * 179.72504 * 9 7 2 11 11 C 1.35682 * 107.50321 * 179.97438 * 10 9 7 12 12 N 1.40597 * 126.07675 * 179.97438 * 11 10 9 13 13 C 1.34777 * 119.99674 * 180.02562 * 12 11 10 14 14 O 1.21299 * 120.00579 * 359.97438 * 13 12 11 15 15 C 1.50705 * 119.99695 * 179.97438 * 13 12 11 16 16 F 1.39896 * 109.47245 * 324.99455 * 15 13 12 17 17 F 1.39904 * 109.46906 * 84.99471 * 15 13 12 18 18 C 1.52997 * 109.47254 * 204.99475 * 15 13 12 19 19 O 1.42902 * 110.01528 * 59.29871 * 18 15 13 20 20 C 1.54271 * 110.03229 * 297.91242 * 18 15 13 21 21 C 1.54970 * 104.15673 * 217.13338 * 20 18 15 22 22 C 1.54885 * 102.77800 * 37.88661 * 21 20 18 23 23 C 1.53869 * 110.03798 * 180.68936 * 18 15 13 24 24 C 1.40648 * 107.84125 * 359.97438 * 11 10 9 25 25 N 1.30907 * 108.38289 * 359.75556 * 24 11 10 26 26 H 0.96996 * 120.00263 * 359.97438 * 1 2 3 27 27 H 1.07994 * 126.24645 * 359.93988 * 10 9 7 28 28 H 0.96997 * 120.00477 * 359.97438 * 12 11 10 29 29 H 0.96701 * 114.00230 * 300.69976 * 19 18 15 30 30 H 1.08996 * 110.48569 * 335.77744 * 20 18 15 31 31 H 1.08993 * 110.48874 * 98.42406 * 20 18 15 32 32 H 1.09001 * 110.72089 * 279.56819 * 21 20 18 33 33 H 1.09006 * 110.76223 * 156.22121 * 21 20 18 34 34 H 1.09002 * 110.48588 * 203.40350 * 22 21 20 35 35 H 1.09001 * 110.48668 * 80.76012 * 22 21 20 36 36 H 1.08998 * 110.03775 * 238.56994 * 23 18 15 37 37 H 1.09004 * 110.02641 * 0.02562 * 23 18 15 38 38 H 1.08000 * 125.80726 * 179.97438 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3129 0.0000 0.0000 3 14 2.2470 1.6178 0.0000 4 1 2.4944 2.0465 -1.4001 5 1 1.4444 2.6527 0.7001 6 1 3.5445 1.4401 0.7001 7 6 2.0079 -1.2037 -0.0005 8 1 3.0880 -1.2036 -0.0010 9 7 1.3213 -2.3929 -0.0068 10 6 1.8750 -3.6405 -0.0134 11 6 0.8578 -4.5384 -0.0175 12 7 0.9891 -5.9382 -0.0252 13 6 -0.1101 -6.7181 -0.0292 14 8 -1.2127 -6.2124 -0.0257 15 6 0.0306 -8.2185 -0.0380 16 9 1.1494 -8.5775 -0.7973 17 9 0.1894 -8.6797 1.2733 18 6 -1.2237 -8.8448 -0.6505 19 8 -1.4061 -8.3687 -1.9855 20 6 -2.4590 -8.5002 0.2068 21 6 -3.3249 -9.7845 0.1576 22 6 -2.2659 -10.9137 0.2082 23 6 -1.1011 -10.3786 -0.6502 24 6 -0.3513 -3.8199 -0.0128 25 7 -0.0715 -2.5411 -0.0008 26 1 -0.4850 0.8400 0.0004 27 1 2.9301 -3.8708 -0.0155 28 1 1.8707 -6.3427 -0.0284 29 1 -1.5008 -7.4086 -2.0512 30 1 -2.1623 -8.2795 1.2321 31 1 -2.9998 -7.6579 -0.2245 32 1 -3.8944 -9.8303 -0.7706 33 1 -3.9874 -9.8373 1.0216 34 1 -2.6663 -11.8317 -0.2219 35 1 -1.9376 -11.0832 1.2337 36 1 -1.1816 -10.7600 -1.6681 37 1 -0.1480 -10.6768 -0.2132 38 1 -1.3419 -4.2500 -0.0149 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000786016464.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:06:40 Heat of formation + Delta-G solvation = -120.454022 kcal Electronic energy + Delta-G solvation = -27104.687701 eV Core-core repulsion = 22812.086308 eV Total energy + Delta-G solvation = -4292.601393 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.118 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -50.48954 -48.43825 -41.89806 -40.82909 -39.51917 -36.20315 -35.99190 -35.10499 -32.35802 -31.07080 -29.88788 -29.72398 -27.40305 -26.28923 -23.15550 -22.67478 -21.95211 -21.42482 -21.17224 -19.73667 -19.36465 -18.89970 -18.77533 -17.48145 -17.16644 -16.94435 -16.54569 -16.42563 -16.02581 -15.63208 -15.39873 -15.26162 -14.98079 -14.94741 -14.75447 -14.37622 -14.33039 -13.81109 -13.65821 -13.51984 -13.40156 -12.96508 -12.91710 -12.80999 -12.27595 -12.12778 -12.10722 -12.03461 -11.79598 -11.52084 -11.34175 -11.10891 -10.92529 -10.77627 -10.17456 -8.70343 -8.51253 -6.29891 0.73797 1.32880 1.34955 1.43508 1.57800 1.76727 2.10399 2.34155 2.35329 2.55442 2.76275 2.86508 3.05221 3.23530 3.44180 3.62967 3.69114 4.17031 4.35137 4.36365 4.39859 4.46687 4.51682 4.69026 4.85056 4.90631 4.94614 4.98275 5.04437 5.11535 5.16234 5.23802 5.27656 5.42228 5.88294 6.15011 6.29253 6.32812 6.63384 6.86779 7.37498 7.59130 8.47759 Molecular weight = 315.12amu Principal moments of inertia in cm(-1) A = 0.035155 B = 0.003087 C = 0.002964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.286135 B = 9067.888121 C = 9445.795745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.820 5.820 2 C -0.004 4.004 3 Si 1.019 2.981 4 H -0.264 1.264 5 H -0.276 1.276 6 H -0.245 1.245 7 C -0.353 4.353 8 H 0.142 0.858 9 N -0.163 5.163 10 C -0.075 4.075 11 C -0.059 4.059 12 N -0.591 5.591 13 C 0.463 3.537 14 O -0.519 6.519 15 C 0.270 3.730 16 F -0.180 7.180 17 F -0.173 7.173 18 C 0.110 3.890 19 O -0.543 6.543 20 C -0.138 4.138 21 C -0.119 4.119 22 C -0.117 4.117 23 C -0.113 4.113 24 C -0.046 4.046 25 N -0.307 5.307 26 H 0.278 0.722 27 H 0.187 0.813 28 H 0.420 0.580 29 H 0.386 0.614 30 H 0.070 0.930 31 H 0.078 0.922 32 H 0.074 0.926 33 H 0.085 0.915 34 H 0.093 0.907 35 H 0.078 0.922 36 H 0.093 0.907 37 H 0.082 0.918 38 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.620 -17.881 0.120 17.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C -0.216 4.216 3 Si 0.838 3.162 4 H -0.189 1.189 5 H -0.201 1.201 6 H -0.168 1.168 7 C -0.484 4.484 8 H 0.159 0.841 9 N 0.069 4.931 10 C -0.225 4.225 11 C -0.165 4.165 12 N -0.234 5.234 13 C 0.245 3.755 14 O -0.396 6.396 15 C 0.229 3.771 16 F -0.161 7.161 17 F -0.154 7.154 18 C 0.067 3.933 19 O -0.351 6.351 20 C -0.176 4.176 21 C -0.156 4.156 22 C -0.154 4.154 23 C -0.150 4.150 24 C -0.221 4.221 25 N -0.139 5.139 26 H 0.088 0.912 27 H 0.204 0.796 28 H 0.257 0.743 29 H 0.236 0.764 30 H 0.089 0.911 31 H 0.097 0.903 32 H 0.093 0.907 33 H 0.103 0.897 34 H 0.112 0.888 35 H 0.096 0.904 36 H 0.111 0.889 37 H 0.101 0.899 38 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -0.734 -16.847 0.013 16.863 hybrid contribution 1.184 0.495 0.202 1.299 sum 0.450 -16.352 0.215 16.360 Atomic orbital electron populations 1.70370 1.08361 1.29309 1.36703 1.26870 0.96492 1.04283 0.93995 0.84589 0.78310 0.74050 0.79270 1.18873 1.20135 1.16800 1.20661 0.93049 0.80790 1.53946 0.84086 1.44872 1.03748 1.04747 1.39697 1.21988 0.98859 0.84214 1.17474 1.17272 0.93501 0.82323 1.23367 1.42403 1.09492 1.03413 1.68129 1.20945 0.85471 0.88658 0.80454 1.90668 1.25650 1.73594 1.49687 1.22201 0.88000 0.90362 0.76512 1.93054 1.54624 1.92808 1.75590 1.93065 1.96105 1.89589 1.36634 1.22844 0.89908 0.96733 0.83830 1.86543 1.94601 1.28816 1.25132 1.23008 0.94921 1.00015 0.99609 1.22532 0.97432 0.92630 1.03020 1.22394 0.93969 0.98812 1.00241 1.22256 1.01205 0.88311 1.03242 1.24223 0.98858 0.90763 1.08283 1.78188 0.91827 1.16465 1.27411 0.91212 0.79553 0.74286 0.76363 0.91128 0.90349 0.90719 0.89672 0.88798 0.90352 0.88880 0.89899 0.80654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -46.03 11.81 21.66 0.26 -45.77 16 2 C 0.00 -0.21 5.50 84.95 0.47 0.26 16 3 Si 1.02 37.54 29.55 68.60 2.03 39.57 16 4 H -0.26 -9.39 7.11 99.48 0.71 -8.68 16 5 H -0.28 -10.10 7.11 99.48 0.71 -9.40 16 6 H -0.24 -8.20 7.11 99.48 0.71 -7.49 16 7 C -0.35 -18.21 10.25 84.01 0.86 -17.35 16 8 H 0.14 6.29 7.83 -2.91 -0.02 6.27 16 9 N -0.16 -8.78 3.74 -190.01 -0.71 -9.49 16 10 C -0.07 -3.36 11.49 83.37 0.96 -2.40 16 11 C -0.06 -2.60 6.90 37.73 0.26 -2.34 16 12 N -0.59 -20.42 5.40 -303.92 -1.64 -22.06 16 13 C 0.46 15.42 6.52 87.66 0.57 15.99 16 14 O -0.52 -19.50 10.36 -2.35 -0.02 -19.53 16 15 C 0.27 7.32 1.24 29.85 0.04 7.36 16 16 F -0.18 -4.71 16.08 44.97 0.72 -3.99 16 17 F -0.17 -4.59 15.80 44.97 0.71 -3.88 16 18 C 0.11 2.70 0.65 -10.07 -0.01 2.69 16 19 O -0.54 -14.61 12.83 -148.24 -1.90 -16.51 16 20 C -0.14 -3.32 4.40 31.70 0.14 -3.18 16 21 C -0.12 -2.09 6.91 31.91 0.22 -1.87 16 22 C -0.12 -1.76 6.83 31.67 0.22 -1.55 16 23 C -0.11 -2.17 5.90 31.32 0.18 -1.99 16 24 C -0.05 -2.36 10.85 85.42 0.93 -1.44 16 25 N -0.31 -17.85 10.40 -56.47 -0.59 -18.44 16 26 H 0.28 14.34 8.31 -92.71 -0.77 13.57 16 27 H 0.19 6.66 8.06 -2.91 -0.02 6.64 16 28 H 0.42 11.69 8.38 -92.71 -0.78 10.91 16 29 H 0.39 10.50 7.44 -74.06 -0.55 9.95 16 30 H 0.07 1.82 7.26 -2.39 -0.02 1.81 16 31 H 0.08 2.13 7.24 -2.39 -0.02 2.12 16 32 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.08 1.28 8.14 -2.38 -0.02 1.26 16 34 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.09 1.74 7.95 -2.39 -0.02 1.72 16 37 H 0.08 1.52 7.32 -2.38 -0.02 1.50 16 38 H 0.18 8.80 5.92 -2.91 -0.02 8.78 16 Total: -1.00 -67.09 323.00 3.50 -63.59 By element: Atomic # 1 Polarization: 42.51 SS G_CDS: -0.19 Total: 42.33 kcal Atomic # 6 Polarization: -10.65 SS G_CDS: 4.84 Total: -5.81 kcal Atomic # 7 Polarization: -93.08 SS G_CDS: -2.68 Total: -95.76 kcal Atomic # 8 Polarization: -34.11 SS G_CDS: -1.93 Total: -36.04 kcal Atomic # 9 Polarization: -9.30 SS G_CDS: 1.43 Total: -7.87 kcal Atomic # 14 Polarization: 37.54 SS G_CDS: 2.03 Total: 39.57 kcal Total: -67.09 3.50 -63.59 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000786016464.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.866 kcal (2) G-P(sol) polarization free energy of solvation -67.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds