Wall clock time and date at job start Fri Apr 10 2020 23:06:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 120.00335 * 2 1 4 4 H 1.48492 * 109.47396 * 269.99823 * 3 2 1 5 5 H 1.48505 * 109.46817 * 30.00080 * 3 2 1 6 6 H 1.48502 * 109.47076 * 149.99570 * 3 2 1 7 7 C 1.37886 * 119.99641 * 180.02562 * 2 1 3 8 8 H 1.07992 * 119.99893 * 0.02562 * 7 2 1 9 9 C 1.50697 * 119.99852 * 180.02562 * 7 2 1 10 10 N 1.46495 * 109.47054 * 179.97438 * 9 7 2 11 11 C 1.46499 * 120.00165 * 79.59717 * 10 9 7 12 12 C 1.50693 * 109.47621 * 89.99812 * 11 10 9 13 13 C 1.38228 * 119.61980 * 94.97825 * 12 11 10 14 14 C 1.38629 * 119.16261 * 179.79268 * 13 12 11 15 15 C 1.38678 * 118.41876 * 0.47424 * 14 13 12 16 16 C 1.38178 * 119.16377 * 359.50704 * 15 14 13 17 17 N 1.31860 * 119.61955 * 275.00274 * 12 11 10 18 18 C 1.34776 * 120.00023 * 259.59538 * 10 9 7 19 19 O 1.21577 * 119.99869 * 180.02562 * 18 10 9 20 20 C 1.47679 * 120.00120 * 0.03913 * 18 10 9 21 21 C 1.40010 * 120.57466 * 24.59863 * 20 18 10 22 22 C 1.38341 * 118.31613 * 179.97438 * 21 20 18 23 23 C 1.38340 * 119.38143 * 359.97438 * 22 21 20 24 24 N 1.31920 * 121.13084 * 0.02562 * 23 22 21 25 25 C 1.31944 * 121.83828 * 359.72393 * 24 23 22 26 26 F 1.35098 * 119.75511 * 180.26589 * 25 24 23 27 27 H 0.97005 * 119.99550 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.47648 * 59.99771 * 9 7 2 29 29 H 1.08998 * 109.47217 * 300.00119 * 9 7 2 30 30 H 1.09010 * 109.46988 * 329.99567 * 11 10 9 31 31 H 1.08999 * 109.47095 * 210.00402 * 11 10 9 32 32 H 1.08001 * 120.41901 * 0.02562 * 13 12 11 33 33 H 1.07994 * 120.79219 * 180.23177 * 14 13 12 34 34 H 1.08000 * 120.41711 * 179.77881 * 15 14 13 35 35 H 1.07997 * 119.62219 * 180.25709 * 16 15 14 36 36 H 1.07999 * 120.84289 * 359.94619 * 21 20 18 37 37 H 1.08002 * 120.30705 * 180.02562 * 22 21 20 38 38 H 1.08001 * 119.43514 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4400 0.7001 7 6 2.0045 -1.1942 -0.0005 8 1 1.4644 -2.1294 -0.0014 9 6 3.5114 -1.1942 0.0000 10 7 3.9997 -2.5754 -0.0001 11 6 4.0283 -3.3421 -1.2481 12 6 5.3557 -3.1393 -1.9320 13 6 6.3744 -4.0517 -1.7309 14 6 7.5902 -3.8582 -2.3682 15 6 7.7399 -2.7437 -3.1798 16 6 6.6765 -1.8749 -3.3335 17 7 5.5322 -2.0932 -2.7151 18 6 4.4226 -3.1408 1.1480 19 8 4.8282 -4.2869 1.1477 20 6 4.3930 -2.3682 2.4062 21 6 3.5036 -1.2985 2.5643 22 6 3.5151 -0.6072 3.7626 23 6 4.3956 -0.9900 4.7586 24 7 5.2239 -2.0020 4.5848 25 6 5.2488 -2.6962 3.4630 26 9 6.1108 -3.7281 3.3322 27 1 -0.4850 0.8401 0.0004 28 1 3.8745 -0.6810 0.8905 29 1 3.8752 -0.6798 -0.8894 30 1 3.2263 -3.0008 -1.9027 31 1 3.8913 -4.4007 -1.0274 32 1 6.2238 -4.9066 -1.0883 33 1 8.4027 -4.5565 -2.2327 34 1 8.6744 -2.5596 -3.6889 35 1 6.7835 -1.0069 -3.9672 36 1 2.8261 -1.0198 1.7708 37 1 2.8424 0.2230 3.9193 38 1 4.4055 -0.4507 5.6943 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000791352156.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:06:43 Heat of formation + Delta-G solvation = 32.369076 kcal Electronic energy + Delta-G solvation = -26244.676539 eV Core-core repulsion = 22389.471277 eV Total energy + Delta-G solvation = -3855.205262 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.112 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -48.65364 -40.46831 -39.86942 -38.53397 -35.63613 -33.41114 -32.53701 -32.25169 -31.38257 -30.63519 -28.51980 -26.65681 -24.17012 -23.40144 -23.19605 -22.56852 -21.90188 -19.43158 -17.69632 -17.36757 -17.04304 -16.73281 -16.62447 -15.94728 -15.81758 -15.42647 -15.34875 -15.01986 -14.54967 -14.20109 -13.72594 -13.69084 -13.24668 -13.16252 -13.07964 -12.91302 -12.67683 -12.66802 -12.22565 -11.70882 -11.55840 -11.28814 -11.11210 -10.69770 -10.40288 -9.93399 -9.84145 -9.74093 -9.54849 -9.32353 -9.14289 -8.93442 -8.80362 -8.77598 -8.00002 -6.45821 -4.50291 0.83872 1.19860 1.37525 1.42427 3.04981 3.12289 3.16270 3.17400 3.43499 3.79052 3.95096 4.06544 4.11297 4.49051 4.71060 4.81837 4.90287 4.94474 4.97261 5.13830 5.17933 5.28974 5.30351 5.55613 5.68671 5.77435 5.92639 5.92770 6.14432 6.19111 6.28583 6.32222 6.33574 6.53071 6.60290 6.83075 6.85056 7.01305 7.21815 7.74220 7.84488 8.15776 8.21349 8.57757 8.66174 9.09882 10.64621 Molecular weight = 315.11amu Principal moments of inertia in cm(-1) A = 0.009418 B = 0.006997 C = 0.004625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2972.355492 B = 4000.558601 C = 6052.774708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.872 5.872 2 C 0.084 3.916 3 Si 0.861 3.139 4 H -0.267 1.267 5 H -0.278 1.278 6 H -0.261 1.261 7 C -0.550 4.550 8 H 0.087 0.913 9 C 0.181 3.819 10 N -0.571 5.571 11 C 0.169 3.831 12 C 0.116 3.884 13 C -0.149 4.149 14 C -0.082 4.082 15 C -0.179 4.179 16 C 0.093 3.907 17 N -0.466 5.466 18 C 0.564 3.436 19 O -0.548 6.548 20 C -0.210 4.210 21 C -0.035 4.035 22 C -0.202 4.202 23 C 0.147 3.853 24 N -0.532 5.532 25 C 0.350 3.650 26 F -0.099 7.099 27 H 0.272 0.728 28 H 0.051 0.949 29 H 0.042 0.958 30 H 0.106 0.894 31 H 0.095 0.905 32 H 0.140 0.860 33 H 0.131 0.869 34 H 0.130 0.870 35 H 0.153 0.847 36 H 0.218 0.782 37 H 0.146 0.854 38 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.470 -0.781 -0.348 10.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.507 5.507 2 C -0.123 4.123 3 Si 0.686 3.314 4 H -0.192 1.192 5 H -0.203 1.203 6 H -0.185 1.185 7 C -0.587 4.587 8 H 0.105 0.895 9 C 0.060 3.940 10 N -0.300 5.300 11 C 0.046 3.954 12 C -0.022 4.022 13 C -0.170 4.170 14 C -0.108 4.108 15 C -0.199 4.199 16 C -0.065 4.065 17 N -0.176 5.176 18 C 0.352 3.648 19 O -0.428 6.428 20 C -0.216 4.216 21 C -0.059 4.059 22 C -0.223 4.223 23 C -0.009 4.009 24 N -0.247 5.247 25 C 0.196 3.804 26 F -0.077 7.077 27 H 0.082 0.918 28 H 0.069 0.931 29 H 0.060 0.940 30 H 0.124 0.876 31 H 0.113 0.887 32 H 0.158 0.842 33 H 0.149 0.851 34 H 0.148 0.852 35 H 0.170 0.830 36 H 0.234 0.766 37 H 0.164 0.836 38 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 10.388 -0.942 0.167 10.431 hybrid contribution 0.764 0.532 -0.556 1.084 sum 11.152 -0.410 -0.389 11.166 Atomic orbital electron populations 1.69876 1.06200 1.27803 1.46844 1.24914 0.94799 0.98923 0.93621 0.87063 0.80551 0.83863 0.79891 1.19158 1.20331 1.18491 1.21315 0.88731 0.95579 1.53067 0.89513 1.20706 0.95762 0.78396 0.99119 1.47642 1.61034 1.15654 1.05676 1.20218 0.92579 0.97527 0.85125 1.21841 0.96985 0.90054 0.93369 1.22169 0.93620 1.01319 0.99878 1.21573 0.97316 0.96957 0.94993 1.22102 1.00489 0.96411 1.00922 1.22756 0.88489 0.98445 0.96788 1.67576 1.24163 1.19156 1.06665 1.17822 0.77812 0.85966 0.83165 1.90726 1.48404 1.17359 1.86311 1.20747 1.02440 1.02148 0.96288 1.24226 0.94115 0.88348 0.99180 1.22270 1.02092 1.03437 0.94458 1.22677 0.88955 0.90486 0.98826 1.67060 1.25685 1.09325 1.22678 1.18149 0.87423 0.85197 0.89630 1.91653 1.66937 1.53850 1.95304 0.91803 0.93150 0.94047 0.87602 0.88690 0.84213 0.85138 0.85223 0.83021 0.76615 0.83610 0.81737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.17 13.96 55.43 0.77 -22.39 16 2 C 0.08 2.07 5.31 -17.82 -0.09 1.98 16 3 Si 0.86 18.26 27.32 -169.99 -4.64 13.61 16 4 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 5 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 6 H -0.26 -5.21 6.54 56.52 0.37 -4.84 16 7 C -0.55 -13.24 7.92 -34.44 -0.27 -13.51 16 8 H 0.09 2.33 8.06 -52.49 -0.42 1.91 16 9 C 0.18 3.87 3.71 -5.20 -0.02 3.85 16 10 N -0.57 -11.63 2.46 -177.62 -0.44 -12.07 16 11 C 0.17 3.09 5.69 -5.20 -0.03 3.06 16 12 C 0.12 1.99 6.36 -82.59 -0.53 1.47 16 13 C -0.15 -2.27 9.72 -39.44 -0.38 -2.66 16 14 C -0.08 -1.04 10.18 -39.27 -0.40 -1.44 16 15 C -0.18 -2.12 10.11 -39.44 -0.40 -2.52 16 16 C 0.09 1.27 11.18 -17.55 -0.20 1.08 16 17 N -0.47 -8.00 10.27 -9.48 -0.10 -8.10 16 18 C 0.56 11.85 7.48 -12.41 -0.09 11.76 16 19 O -0.55 -12.05 15.27 5.30 0.08 -11.97 16 20 C -0.21 -4.17 5.62 -104.76 -0.59 -4.76 16 21 C -0.03 -0.66 7.63 -38.88 -0.30 -0.95 16 22 C -0.20 -3.10 10.09 -39.51 -0.40 -3.50 16 23 C 0.15 2.09 11.17 -17.48 -0.20 1.90 16 24 N -0.53 -9.27 10.36 -13.22 -0.14 -9.40 16 25 C 0.35 6.77 8.38 -16.89 -0.14 6.62 16 26 F -0.10 -1.97 15.89 2.25 0.04 -1.93 16 27 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 28 H 0.05 1.07 3.23 -51.93 -0.17 0.91 16 29 H 0.04 0.91 7.57 -51.93 -0.39 0.52 16 30 H 0.11 1.97 8.06 -51.92 -0.42 1.55 16 31 H 0.09 1.64 7.32 -51.93 -0.38 1.26 16 32 H 0.14 2.11 8.01 -52.49 -0.42 1.69 16 33 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 34 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 35 H 0.15 1.65 8.06 -52.49 -0.42 1.23 16 36 H 0.22 4.50 2.63 -52.49 -0.14 4.37 16 37 H 0.15 1.85 8.06 -52.49 -0.42 1.42 16 38 H 0.17 1.63 8.06 -52.49 -0.42 1.21 16 LS Contribution 330.30 15.07 4.98 4.98 Total: -1.00 -29.37 330.30 -7.10 -36.47 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: -3.62 Total: 8.42 kcal Atomic # 6 Polarization: 6.41 SS G_CDS: -4.03 Total: 2.38 kcal Atomic # 7 Polarization: -52.07 SS G_CDS: 0.10 Total: -51.96 kcal Atomic # 8 Polarization: -12.05 SS G_CDS: 0.08 Total: -11.97 kcal Atomic # 9 Polarization: -1.97 SS G_CDS: 0.04 Total: -1.93 kcal Atomic # 14 Polarization: 18.26 SS G_CDS: -4.64 Total: 13.61 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -29.37 -7.10 -36.47 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000791352156.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.841 kcal (2) G-P(sol) polarization free energy of solvation -29.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.472 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds