Wall clock time and date at job start Fri Apr 10 2020 23:06:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 120.00335 * 2 1 4 4 H 1.48492 * 109.47396 * 269.99823 * 3 2 1 5 5 H 1.48505 * 109.46817 * 30.00080 * 3 2 1 6 6 H 1.48502 * 109.47076 * 149.99570 * 3 2 1 7 7 C 1.37886 * 119.99641 * 180.02562 * 2 1 3 8 8 H 1.07992 * 119.99893 * 0.02562 * 7 2 1 9 9 C 1.50697 * 119.99852 * 180.02562 * 7 2 1 10 10 N 1.46495 * 109.47054 * 179.97438 * 9 7 2 11 11 C 1.46499 * 120.00165 * 79.59717 * 10 9 7 12 12 C 1.50693 * 109.47621 * 89.99812 * 11 10 9 13 13 C 1.38228 * 119.61980 * 94.97825 * 12 11 10 14 14 C 1.38629 * 119.16261 * 179.79268 * 13 12 11 15 15 C 1.38678 * 118.41876 * 0.47424 * 14 13 12 16 16 C 1.38178 * 119.16377 * 359.50704 * 15 14 13 17 17 N 1.31860 * 119.61955 * 275.00274 * 12 11 10 18 18 C 1.34776 * 120.00023 * 259.59538 * 10 9 7 19 19 O 1.21577 * 119.99869 * 180.02562 * 18 10 9 20 20 C 1.47679 * 120.00120 * 0.03913 * 18 10 9 21 21 C 1.40010 * 120.57466 * 24.59863 * 20 18 10 22 22 C 1.38341 * 118.31613 * 179.97438 * 21 20 18 23 23 C 1.38340 * 119.38143 * 359.97438 * 22 21 20 24 24 N 1.31920 * 121.13084 * 0.02562 * 23 22 21 25 25 C 1.31944 * 121.83828 * 359.72393 * 24 23 22 26 26 F 1.35098 * 119.75511 * 180.26589 * 25 24 23 27 27 H 0.97005 * 119.99550 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.47648 * 59.99771 * 9 7 2 29 29 H 1.08998 * 109.47217 * 300.00119 * 9 7 2 30 30 H 1.09010 * 109.46988 * 329.99567 * 11 10 9 31 31 H 1.08999 * 109.47095 * 210.00402 * 11 10 9 32 32 H 1.08001 * 120.41901 * 0.02562 * 13 12 11 33 33 H 1.07994 * 120.79219 * 180.23177 * 14 13 12 34 34 H 1.08000 * 120.41711 * 179.77881 * 15 14 13 35 35 H 1.07997 * 119.62219 * 180.25709 * 16 15 14 36 36 H 1.07999 * 120.84289 * 359.94619 * 21 20 18 37 37 H 1.08002 * 120.30705 * 180.02562 * 22 21 20 38 38 H 1.08001 * 119.43514 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4400 0.7001 7 6 2.0045 -1.1942 -0.0005 8 1 1.4644 -2.1294 -0.0014 9 6 3.5114 -1.1942 0.0000 10 7 3.9997 -2.5754 -0.0001 11 6 4.0283 -3.3421 -1.2481 12 6 5.3557 -3.1393 -1.9320 13 6 6.3744 -4.0517 -1.7309 14 6 7.5902 -3.8582 -2.3682 15 6 7.7399 -2.7437 -3.1798 16 6 6.6765 -1.8749 -3.3335 17 7 5.5322 -2.0932 -2.7151 18 6 4.4226 -3.1408 1.1480 19 8 4.8282 -4.2869 1.1477 20 6 4.3930 -2.3682 2.4062 21 6 3.5036 -1.2985 2.5643 22 6 3.5151 -0.6072 3.7626 23 6 4.3956 -0.9900 4.7586 24 7 5.2239 -2.0020 4.5848 25 6 5.2488 -2.6962 3.4630 26 9 6.1108 -3.7281 3.3322 27 1 -0.4850 0.8401 0.0004 28 1 3.8745 -0.6810 0.8905 29 1 3.8752 -0.6798 -0.8894 30 1 3.2263 -3.0008 -1.9027 31 1 3.8913 -4.4007 -1.0274 32 1 6.2238 -4.9066 -1.0883 33 1 8.4027 -4.5565 -2.2327 34 1 8.6744 -2.5596 -3.6889 35 1 6.7835 -1.0069 -3.9672 36 1 2.8261 -1.0198 1.7708 37 1 2.8424 0.2230 3.9193 38 1 4.4055 -0.4507 5.6943 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000791352156.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:06:42 Heat of formation + Delta-G solvation = 13.993161 kcal Electronic energy + Delta-G solvation = -26245.473378 eV Core-core repulsion = 22389.471277 eV Total energy + Delta-G solvation = -3856.002101 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.112 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -50.14301 -41.89967 -41.05973 -39.98674 -37.29666 -34.97256 -34.17842 -33.36914 -32.66596 -31.97098 -30.23729 -28.05038 -25.60867 -24.61943 -24.57438 -24.17697 -23.13103 -20.94228 -19.21404 -19.09736 -18.46840 -18.28318 -17.80114 -17.32268 -17.16920 -16.84300 -16.56971 -16.39433 -16.15607 -15.71533 -15.27519 -15.04160 -14.65824 -14.56694 -14.40234 -14.24508 -14.12419 -13.96611 -13.64868 -13.21910 -12.96512 -12.78922 -12.67378 -12.32572 -12.00903 -11.76589 -11.38321 -11.07376 -10.84207 -10.78972 -10.59684 -10.43006 -10.15050 -9.99155 -9.60690 -8.37315 -6.46878 -0.53521 -0.01987 0.08638 0.35853 1.36691 1.42035 1.48615 1.65259 1.96871 2.28351 2.42988 2.55928 2.92157 2.93816 3.26589 3.37492 3.52452 3.78065 3.86258 4.00542 4.00826 4.14877 4.22805 4.31387 4.42183 4.54392 4.55830 4.64876 4.73729 4.82741 4.84952 5.01210 5.11874 5.20911 5.24387 5.27098 5.43323 5.53942 5.78171 6.04475 6.39767 6.47039 6.61074 6.98332 7.06559 7.18124 8.77032 Molecular weight = 315.11amu Principal moments of inertia in cm(-1) A = 0.009418 B = 0.006997 C = 0.004625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2972.355492 B = 4000.558601 C = 6052.774708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.041 3.959 3 Si 0.920 3.080 4 H -0.271 1.271 5 H -0.268 1.268 6 H -0.238 1.238 7 C -0.545 4.545 8 H 0.043 0.957 9 C 0.195 3.805 10 N -0.574 5.574 11 C 0.169 3.831 12 C 0.093 3.907 13 C -0.162 4.162 14 C -0.079 4.079 15 C -0.161 4.161 16 C 0.081 3.919 17 N -0.502 5.502 18 C 0.557 3.443 19 O -0.568 6.568 20 C -0.229 4.229 21 C -0.055 4.055 22 C -0.189 4.189 23 C 0.165 3.835 24 N -0.536 5.536 25 C 0.336 3.664 26 F -0.110 7.110 27 H 0.275 0.725 28 H 0.064 0.936 29 H 0.036 0.964 30 H 0.090 0.910 31 H 0.093 0.907 32 H 0.131 0.869 33 H 0.164 0.836 34 H 0.173 0.827 35 H 0.180 0.820 36 H 0.197 0.803 37 H 0.180 0.820 38 H 0.221 0.779 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.099 1.300 0.610 13.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.162 4.162 3 Si 0.742 3.258 4 H -0.196 1.196 5 H -0.192 1.192 6 H -0.161 1.161 7 C -0.582 4.582 8 H 0.061 0.939 9 C 0.074 3.926 10 N -0.302 5.302 11 C 0.046 3.954 12 C -0.045 4.045 13 C -0.182 4.182 14 C -0.105 4.105 15 C -0.181 4.181 16 C -0.076 4.076 17 N -0.212 5.212 18 C 0.346 3.654 19 O -0.449 6.449 20 C -0.236 4.236 21 C -0.079 4.079 22 C -0.208 4.208 23 C 0.009 3.991 24 N -0.252 5.252 25 C 0.182 3.818 26 F -0.089 7.089 27 H 0.084 0.916 28 H 0.081 0.919 29 H 0.054 0.946 30 H 0.108 0.892 31 H 0.111 0.889 32 H 0.149 0.851 33 H 0.182 0.818 34 H 0.191 0.809 35 H 0.197 0.803 36 H 0.213 0.787 37 H 0.197 0.803 38 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 13.024 1.119 1.122 13.120 hybrid contribution -0.049 -0.156 -0.844 0.860 sum 12.975 0.963 0.278 13.014 Atomic orbital electron populations 1.70001 1.08024 1.28910 1.48711 1.25613 0.95328 1.02258 0.92958 0.86122 0.80295 0.79474 0.79892 1.19639 1.19247 1.16114 1.21254 0.90092 0.94030 1.52844 0.93885 1.20483 0.93708 0.79177 0.99221 1.47689 1.60740 1.15417 1.06369 1.20186 0.93734 0.97069 0.84418 1.21501 0.96631 0.91498 0.94844 1.22168 0.94603 1.00865 1.00602 1.21985 0.96830 0.97764 0.93919 1.22545 1.01342 0.94776 0.99432 1.23330 0.88011 0.99733 0.96524 1.67485 1.26369 1.19611 1.07704 1.18150 0.77509 0.85994 0.83762 1.90691 1.49448 1.18124 1.86684 1.20707 1.03823 1.03033 0.96024 1.23989 0.94193 0.89197 1.00537 1.22661 1.02059 1.03237 0.92868 1.23581 0.86543 0.88810 1.00163 1.67212 1.26485 1.09962 1.21498 1.18239 0.87654 0.85629 0.90240 1.91614 1.67284 1.54499 1.95458 0.91563 0.91861 0.94595 0.89208 0.88862 0.85078 0.81843 0.80928 0.80347 0.78678 0.80253 0.76248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.33 13.96 21.45 0.30 -50.03 16 2 C 0.04 2.06 5.31 84.66 0.45 2.51 16 3 Si 0.92 37.10 27.32 68.60 1.87 38.97 16 4 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 5 H -0.27 -10.32 7.11 99.48 0.71 -9.61 16 6 H -0.24 -8.65 6.54 99.48 0.65 -8.00 16 7 C -0.54 -27.48 7.92 25.60 0.20 -27.28 16 8 H 0.04 2.49 8.06 -2.91 -0.02 2.47 16 9 C 0.20 8.59 3.71 85.63 0.32 8.91 16 10 N -0.57 -24.60 2.46 -834.13 -2.05 -26.65 16 11 C 0.17 6.66 5.69 85.63 0.49 7.15 16 12 C 0.09 3.30 6.36 42.55 0.27 3.57 16 13 C -0.16 -4.97 9.72 22.36 0.22 -4.75 16 14 C -0.08 -1.82 10.18 22.47 0.23 -1.59 16 15 C -0.16 -3.28 10.11 22.36 0.23 -3.06 16 16 C 0.08 2.08 11.18 84.67 0.95 3.03 16 17 N -0.50 -17.31 10.27 -183.89 -1.89 -19.20 16 18 C 0.56 24.40 7.48 86.74 0.65 25.05 16 19 O -0.57 -26.20 15.27 -3.96 -0.06 -26.26 16 20 C -0.23 -9.19 5.62 -19.95 -0.11 -9.30 16 21 C -0.06 -2.03 7.63 22.72 0.17 -1.85 16 22 C -0.19 -5.15 10.09 22.32 0.23 -4.92 16 23 C 0.16 4.01 11.17 84.70 0.95 4.95 16 24 N -0.54 -17.34 10.36 -195.73 -2.03 -19.37 16 25 C 0.34 12.82 8.38 85.08 0.71 13.53 16 26 F -0.11 -4.42 15.89 44.97 0.71 -3.71 16 27 H 0.27 13.97 8.31 -92.70 -0.77 13.20 16 28 H 0.06 2.68 3.23 -2.39 -0.01 2.67 16 29 H 0.04 1.62 7.57 -2.39 -0.02 1.60 16 30 H 0.09 3.69 8.06 -2.38 -0.02 3.67 16 31 H 0.09 3.56 7.32 -2.39 -0.02 3.55 16 32 H 0.13 4.15 8.01 -2.91 -0.02 4.12 16 33 H 0.16 2.62 8.06 -2.91 -0.02 2.60 16 34 H 0.17 2.03 8.06 -2.91 -0.02 2.01 16 35 H 0.18 3.40 8.06 -2.91 -0.02 3.38 16 36 H 0.20 8.19 2.63 -2.91 -0.01 8.18 16 37 H 0.18 3.68 8.06 -2.91 -0.02 3.66 16 38 H 0.22 2.90 8.06 -2.91 -0.02 2.88 16 Total: -1.00 -68.21 330.30 3.86 -64.35 By element: Atomic # 1 Polarization: 24.90 SS G_CDS: 1.06 Total: 25.96 kcal Atomic # 6 Polarization: 10.00 SS G_CDS: 5.94 Total: 15.95 kcal Atomic # 7 Polarization: -109.58 SS G_CDS: -5.67 Total: -115.25 kcal Atomic # 8 Polarization: -26.20 SS G_CDS: -0.06 Total: -26.26 kcal Atomic # 9 Polarization: -4.42 SS G_CDS: 0.71 Total: -3.71 kcal Atomic # 14 Polarization: 37.10 SS G_CDS: 1.87 Total: 38.97 kcal Total: -68.21 3.86 -64.35 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000791352156.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.340 kcal (2) G-P(sol) polarization free energy of solvation -68.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.347 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds