Wall clock time and date at job start Fri Apr 10 2020 23:06:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30823 * 1 3 3 Si 1.86801 * 119.99964 * 2 1 4 4 H 1.48500 * 109.47234 * 275.40747 * 3 2 1 5 5 H 1.48509 * 109.46900 * 35.40289 * 3 2 1 6 6 H 1.48493 * 109.47145 * 155.40064 * 3 2 1 7 7 C 1.39942 * 120.00139 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99743 * 342.01352 * 7 2 1 9 9 C 1.41401 * 120.00042 * 162.01186 * 7 2 1 10 10 C 1.40735 * 120.24580 * 329.99435 * 9 7 2 11 11 C 1.37587 * 119.74468 * 180.31438 * 10 9 7 12 12 C 1.38657 * 120.24847 * 359.67011 * 11 10 9 13 13 C 1.38614 * 120.50431 * 0.02562 * 12 11 10 14 14 C 1.37636 * 120.24176 * 0.02562 * 13 12 11 15 15 C 1.50701 * 120.12536 * 179.97438 * 14 13 12 16 16 C 1.50701 * 109.47118 * 265.00196 * 15 14 13 17 17 O 1.21273 * 120.00110 * 359.97438 * 16 15 14 18 18 N 1.34778 * 120.00099 * 179.97438 * 16 15 14 19 19 N 1.40094 * 120.00159 * 179.97438 * 18 16 15 20 20 C 1.39152 * 119.99936 * 180.02562 * 19 18 16 21 21 N 1.32362 * 119.72141 * 359.97438 * 20 19 18 22 22 C 1.31977 * 121.64883 * 180.02562 * 21 20 19 23 23 C 1.38021 * 120.89934 * 359.97438 * 22 21 20 24 24 C 1.38856 * 119.34776 * 0.02562 * 23 22 21 25 25 C 1.38483 * 118.48420 * 0.02562 * 24 23 22 26 26 F 1.35109 * 120.47364 * 179.97438 * 25 24 23 27 27 H 0.97007 * 120.00128 * 359.97438 * 1 2 3 28 28 H 1.08003 * 120.12448 * 0.02562 * 10 9 7 29 29 H 1.08002 * 119.87662 * 179.68004 * 11 10 9 30 30 H 1.08007 * 119.75037 * 180.02562 * 12 11 10 31 31 H 1.07997 * 119.87638 * 180.02562 * 13 12 11 32 32 H 1.09000 * 109.47459 * 144.99984 * 15 14 13 33 33 H 1.09005 * 109.47249 * 25.00260 * 15 14 13 34 34 H 0.97005 * 119.99656 * 359.97438 * 18 16 15 35 35 H 0.97002 * 120.00198 * 0.02562 * 19 18 16 36 36 H 1.07998 * 119.54756 * 180.02562 * 22 21 20 37 37 H 1.08006 * 120.32461 * 179.72544 * 23 22 21 38 38 H 1.07999 * 120.75989 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.3755 2.1124 -1.3938 5 1 1.5013 2.6170 0.8112 6 1 3.5921 1.4100 0.5828 7 6 2.0080 -1.2119 -0.0005 8 1 1.5075 -2.1245 0.2879 9 6 3.3701 -1.2417 -0.3787 10 6 3.8681 -0.3102 -1.3087 11 6 5.1939 -0.3526 -1.6743 12 6 6.0398 -1.3040 -1.1249 13 6 5.5617 -2.2223 -0.2033 14 6 4.2389 -2.1991 0.1762 15 6 3.7218 -3.1992 1.1779 16 6 3.1187 -4.3731 0.4504 17 8 3.1094 -4.3953 -0.7621 18 7 2.5898 -5.3984 1.1472 19 7 2.0288 -6.4895 0.4709 20 6 1.4823 -7.5478 1.1904 21 7 1.4959 -7.5181 2.5136 22 6 0.9888 -8.5011 3.2336 23 6 0.4211 -9.6036 2.6277 24 6 0.3858 -9.6756 1.2414 25 6 0.9264 -8.6300 0.5118 26 9 0.9140 -8.6586 -0.8389 27 1 -0.4851 0.8401 0.0004 28 1 3.2111 0.4321 -1.7374 29 1 5.5771 0.3580 -2.3917 30 1 7.0792 -1.3297 -1.4173 31 1 6.2297 -2.9587 0.2185 32 1 2.9616 -2.7289 1.8017 33 1 4.5441 -3.5438 1.8051 34 1 2.5977 -5.3808 2.1171 35 1 2.0213 -6.5072 -0.4989 36 1 1.0176 -8.4415 4.3115 37 1 0.0128 -10.4048 3.2259 38 1 -0.0525 -10.5279 0.7436 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000804213046.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:06:45 Heat of formation + Delta-G solvation = 14.128131 kcal Electronic energy + Delta-G solvation = -24897.511195 eV Core-core repulsion = 21041.514946 eV Total energy + Delta-G solvation = -3855.996248 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.112 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -48.99011 -40.35150 -39.32793 -37.70599 -35.82254 -33.59460 -32.56520 -32.23724 -31.55184 -30.33140 -28.84428 -26.74903 -24.86738 -23.83337 -23.08292 -21.47382 -20.99425 -19.71470 -18.41761 -17.92596 -17.41441 -17.34447 -16.41886 -16.04535 -15.96809 -15.60830 -15.07699 -14.94327 -14.40999 -14.08620 -14.03427 -13.76527 -13.56765 -13.39855 -13.25278 -12.70820 -12.48836 -12.18006 -11.92403 -11.90472 -11.42672 -11.15075 -10.81214 -10.74939 -10.25738 -10.03706 -9.92360 -9.71875 -9.59250 -9.48098 -9.32010 -9.12487 -7.61339 -7.52173 -7.43219 -6.93687 -4.48747 0.83273 1.03522 1.94847 2.61741 2.72650 3.12254 3.12858 3.21852 3.32734 3.52815 3.72004 3.95471 3.98928 4.45044 4.50503 4.63602 4.76446 5.07974 5.33095 5.45802 5.54169 5.65224 5.78474 5.80128 5.87609 6.07162 6.17683 6.24550 6.30501 6.55354 6.71070 6.75786 6.94755 7.19987 7.25169 7.41862 7.63771 7.67794 7.75426 7.89569 7.93517 8.13521 8.35522 8.67138 8.71898 8.81754 10.08325 Molecular weight = 315.11amu Principal moments of inertia in cm(-1) A = 0.017936 B = 0.003318 C = 0.003072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1560.757192 B = 8436.370454 C = 9112.978378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.808 5.808 2 C 0.085 3.915 3 Si 0.910 3.090 4 H -0.271 1.271 5 H -0.292 1.292 6 H -0.243 1.243 7 C -0.445 4.445 8 H 0.089 0.911 9 C 0.111 3.889 10 C -0.233 4.233 11 C -0.078 4.078 12 C -0.243 4.243 13 C -0.065 4.065 14 C -0.172 4.172 15 C -0.060 4.060 16 C 0.515 3.485 17 O -0.521 6.521 18 N -0.528 5.528 19 N -0.509 5.509 20 C 0.390 3.610 21 N -0.528 5.528 22 C 0.149 3.851 23 C -0.218 4.218 24 C -0.058 4.058 25 C -0.022 4.022 26 F -0.134 7.134 27 H 0.284 0.716 28 H 0.100 0.900 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.107 0.893 33 H 0.086 0.914 34 H 0.428 0.572 35 H 0.444 0.556 36 H 0.165 0.835 37 H 0.141 0.859 38 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.145 -14.855 7.749 16.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.432 5.432 2 C -0.134 4.134 3 Si 0.737 3.263 4 H -0.198 1.198 5 H -0.219 1.219 6 H -0.166 1.166 7 C -0.473 4.473 8 H 0.107 0.893 9 C 0.108 3.892 10 C -0.252 4.252 11 C -0.096 4.096 12 C -0.262 4.262 13 C -0.084 4.084 14 C -0.173 4.173 15 C -0.101 4.101 16 C 0.303 3.697 17 O -0.393 6.393 18 N -0.278 5.278 19 N -0.235 5.235 20 C 0.151 3.849 21 N -0.247 5.247 22 C -0.008 4.008 23 C -0.242 4.242 24 C -0.084 4.084 25 C -0.050 4.050 26 F -0.113 7.113 27 H 0.095 0.905 28 H 0.117 0.883 29 H 0.111 0.889 30 H 0.111 0.889 31 H 0.110 0.890 32 H 0.125 0.875 33 H 0.104 0.896 34 H 0.270 0.730 35 H 0.289 0.711 36 H 0.182 0.818 37 H 0.159 0.841 38 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 1.332 -13.842 7.277 15.695 hybrid contribution -0.334 -0.057 -0.739 0.813 sum 0.998 -13.899 6.538 15.392 Atomic orbital electron populations 1.69711 1.08117 1.30173 1.35165 1.26168 0.94676 1.01729 0.90838 0.86331 0.81328 0.79807 0.78830 1.19751 1.21941 1.16601 1.19426 0.93029 0.95766 1.39081 0.89347 1.17473 0.92579 0.90122 0.89025 1.21004 0.95574 1.04583 1.04051 1.20612 0.93883 0.97186 0.97943 1.20336 0.98246 1.01836 1.05819 1.20442 0.94539 0.96832 0.96563 1.18986 0.93153 1.01658 1.03549 1.20211 1.00767 0.91217 0.97902 1.21671 0.77392 0.81807 0.88869 1.90716 1.56410 1.78265 1.13902 1.45300 1.60849 1.12774 1.08857 1.43248 1.61223 1.11839 1.07150 1.18295 0.91517 0.85932 0.89200 1.67173 1.23632 1.30395 1.03457 1.22486 0.90708 0.87716 0.99927 1.21705 1.06955 1.01547 0.93957 1.21373 0.95819 0.96740 0.94515 1.17772 1.11190 0.98087 0.77957 1.91502 1.95294 1.96606 1.27889 0.90526 0.88276 0.88947 0.88936 0.88971 0.87543 0.89621 0.73009 0.71109 0.81832 0.84130 0.83575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.63 13.93 55.55 0.77 -20.85 16 2 C 0.08 2.22 5.41 -17.34 -0.09 2.13 16 3 Si 0.91 20.79 24.51 -169.99 -4.17 16.62 16 4 H -0.27 -6.11 6.71 56.52 0.38 -5.73 16 5 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 6 H -0.24 -5.61 6.85 56.52 0.39 -5.23 16 7 C -0.44 -11.91 8.56 -37.74 -0.32 -12.24 16 8 H 0.09 2.50 6.99 -52.49 -0.37 2.13 16 9 C 0.11 2.82 5.10 -106.82 -0.54 2.28 16 10 C -0.23 -5.78 7.17 -38.88 -0.28 -6.06 16 11 C -0.08 -1.75 10.02 -39.66 -0.40 -2.15 16 12 C -0.24 -5.19 10.05 -39.29 -0.39 -5.58 16 13 C -0.07 -1.39 9.66 -39.66 -0.38 -1.77 16 14 C -0.17 -3.88 4.43 -103.91 -0.46 -4.34 16 15 C -0.06 -1.11 5.19 -29.03 -0.15 -1.26 16 16 C 0.51 10.03 7.54 -10.98 -0.08 9.95 16 17 O -0.52 -12.35 15.87 5.56 0.09 -12.26 16 18 N -0.53 -8.52 6.29 31.22 0.20 -8.32 16 19 N -0.51 -8.02 6.42 31.19 0.20 -7.82 16 20 C 0.39 5.37 7.60 -154.84 -1.18 4.19 16 21 N -0.53 -6.54 9.37 -12.36 -0.12 -6.66 16 22 C 0.15 1.34 11.17 -17.57 -0.20 1.14 16 23 C -0.22 -1.67 10.10 -39.43 -0.40 -2.07 16 24 C -0.06 -0.53 10.15 -39.26 -0.40 -0.92 16 25 C -0.02 -0.27 7.35 -39.09 -0.29 -0.56 16 26 F -0.13 -1.78 16.65 2.25 0.04 -1.74 16 27 H 0.28 6.91 8.30 -40.82 -0.34 6.57 16 28 H 0.10 2.46 4.74 -52.48 -0.25 2.21 16 29 H 0.09 1.81 8.06 -52.49 -0.42 1.39 16 30 H 0.09 1.72 8.06 -52.48 -0.42 1.30 16 31 H 0.09 1.68 8.06 -52.49 -0.42 1.26 16 32 H 0.11 1.95 7.15 -51.93 -0.37 1.58 16 33 H 0.09 1.25 8.05 -51.93 -0.42 0.84 16 34 H 0.43 5.91 7.95 -182.60 -1.45 4.45 16 35 H 0.44 7.31 7.47 -182.60 -1.36 5.94 16 36 H 0.16 0.92 8.06 -52.49 -0.42 0.50 16 37 H 0.14 0.64 8.06 -52.48 -0.42 0.21 16 38 H 0.15 0.94 8.06 -52.49 -0.42 0.52 16 LS Contribution 332.23 15.07 5.01 5.01 Total: -1.00 -31.87 332.23 -9.48 -41.35 By element: Atomic # 1 Polarization: 17.87 SS G_CDS: -5.93 Total: 11.94 kcal Atomic # 6 Polarization: -11.69 SS G_CDS: -5.57 Total: -17.26 kcal Atomic # 7 Polarization: -44.70 SS G_CDS: 1.05 Total: -43.65 kcal Atomic # 8 Polarization: -12.35 SS G_CDS: 0.09 Total: -12.26 kcal Atomic # 9 Polarization: -1.78 SS G_CDS: 0.04 Total: -1.74 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -4.17 Total: 16.62 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -31.87 -9.48 -41.35 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000804213046.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.476 kcal (2) G-P(sol) polarization free energy of solvation -31.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.348 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds