Wall clock time and date at job start Fri Apr 10 2020 23:06:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30823 * 1 3 3 Si 1.86801 * 119.99964 * 2 1 4 4 H 1.48500 * 109.47234 * 275.40747 * 3 2 1 5 5 H 1.48509 * 109.46900 * 35.40289 * 3 2 1 6 6 H 1.48493 * 109.47145 * 155.40064 * 3 2 1 7 7 C 1.39942 * 120.00139 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99743 * 342.01352 * 7 2 1 9 9 C 1.41401 * 120.00042 * 162.01186 * 7 2 1 10 10 C 1.40735 * 120.24580 * 329.99435 * 9 7 2 11 11 C 1.37587 * 119.74468 * 180.31438 * 10 9 7 12 12 C 1.38657 * 120.24847 * 359.67011 * 11 10 9 13 13 C 1.38614 * 120.50431 * 0.02562 * 12 11 10 14 14 C 1.37636 * 120.24176 * 0.02562 * 13 12 11 15 15 C 1.50701 * 120.12536 * 179.97438 * 14 13 12 16 16 C 1.50701 * 109.47118 * 265.00196 * 15 14 13 17 17 O 1.21273 * 120.00110 * 359.97438 * 16 15 14 18 18 N 1.34778 * 120.00099 * 179.97438 * 16 15 14 19 19 N 1.40094 * 120.00159 * 179.97438 * 18 16 15 20 20 C 1.39152 * 119.99936 * 180.02562 * 19 18 16 21 21 N 1.32362 * 119.72141 * 359.97438 * 20 19 18 22 22 C 1.31977 * 121.64883 * 180.02562 * 21 20 19 23 23 C 1.38021 * 120.89934 * 359.97438 * 22 21 20 24 24 C 1.38856 * 119.34776 * 0.02562 * 23 22 21 25 25 C 1.38483 * 118.48420 * 0.02562 * 24 23 22 26 26 F 1.35109 * 120.47364 * 179.97438 * 25 24 23 27 27 H 0.97007 * 120.00128 * 359.97438 * 1 2 3 28 28 H 1.08003 * 120.12448 * 0.02562 * 10 9 7 29 29 H 1.08002 * 119.87662 * 179.68004 * 11 10 9 30 30 H 1.08007 * 119.75037 * 180.02562 * 12 11 10 31 31 H 1.07997 * 119.87638 * 180.02562 * 13 12 11 32 32 H 1.09000 * 109.47459 * 144.99984 * 15 14 13 33 33 H 1.09005 * 109.47249 * 25.00260 * 15 14 13 34 34 H 0.97005 * 119.99656 * 359.97438 * 18 16 15 35 35 H 0.97002 * 120.00198 * 0.02562 * 19 18 16 36 36 H 1.07998 * 119.54756 * 180.02562 * 22 21 20 37 37 H 1.08006 * 120.32461 * 179.72544 * 23 22 21 38 38 H 1.07999 * 120.75989 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.3755 2.1124 -1.3938 5 1 1.5013 2.6170 0.8112 6 1 3.5921 1.4100 0.5828 7 6 2.0080 -1.2119 -0.0005 8 1 1.5075 -2.1245 0.2879 9 6 3.3701 -1.2417 -0.3787 10 6 3.8681 -0.3102 -1.3087 11 6 5.1939 -0.3526 -1.6743 12 6 6.0398 -1.3040 -1.1249 13 6 5.5617 -2.2223 -0.2033 14 6 4.2389 -2.1991 0.1762 15 6 3.7218 -3.1992 1.1779 16 6 3.1187 -4.3731 0.4504 17 8 3.1094 -4.3953 -0.7621 18 7 2.5898 -5.3984 1.1472 19 7 2.0288 -6.4895 0.4709 20 6 1.4823 -7.5478 1.1904 21 7 1.4959 -7.5181 2.5136 22 6 0.9888 -8.5011 3.2336 23 6 0.4211 -9.6036 2.6277 24 6 0.3858 -9.6756 1.2414 25 6 0.9264 -8.6300 0.5118 26 9 0.9140 -8.6586 -0.8389 27 1 -0.4851 0.8401 0.0004 28 1 3.2111 0.4321 -1.7374 29 1 5.5771 0.3580 -2.3917 30 1 7.0792 -1.3297 -1.4173 31 1 6.2297 -2.9587 0.2185 32 1 2.9616 -2.7289 1.8017 33 1 4.5441 -3.5438 1.8051 34 1 2.5977 -5.3808 2.1171 35 1 2.0213 -6.5072 -0.4989 36 1 1.0176 -8.4415 4.3115 37 1 0.0128 -10.4048 3.2259 38 1 -0.0525 -10.5279 0.7436 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000804213046.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:06:44 Heat of formation + Delta-G solvation = -6.517149 kcal Electronic energy + Delta-G solvation = -24898.406441 eV Core-core repulsion = 21041.514946 eV Total energy + Delta-G solvation = -3856.891495 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.112 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.94473 -41.37543 -40.70259 -39.38184 -37.08034 -35.49455 -33.91268 -33.27136 -32.81482 -32.16130 -29.95982 -28.26972 -26.66917 -24.72653 -24.00684 -23.22830 -22.49255 -21.29135 -19.57614 -19.23422 -19.05679 -18.32353 -17.62515 -17.50266 -17.03386 -16.92778 -16.60856 -16.17410 -15.81729 -15.58229 -15.46532 -15.02247 -14.80586 -14.79014 -14.53183 -14.05095 -13.86367 -13.74454 -13.23049 -13.16324 -13.08831 -12.69721 -12.65202 -12.51519 -11.99490 -11.53975 -11.39833 -11.14681 -10.97545 -10.88680 -10.70735 -10.38725 -9.40390 -9.31694 -8.87001 -8.54010 -6.46305 0.02679 0.22627 0.62671 0.88817 1.01156 1.27579 1.41385 1.49989 1.64291 2.13901 2.62099 2.70564 2.73490 3.05211 3.46332 3.68061 3.80547 3.97139 4.08578 4.24012 4.27759 4.44441 4.50062 4.56569 4.70969 4.71550 4.92724 4.94344 4.95635 5.11599 5.16125 5.36850 5.37836 5.66082 5.74801 5.86404 5.94883 6.04396 6.08960 6.28650 6.44048 6.48913 6.79228 6.89796 6.90821 7.32839 8.20973 Molecular weight = 315.11amu Principal moments of inertia in cm(-1) A = 0.017936 B = 0.003318 C = 0.003072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1560.757192 B = 8436.370454 C = 9112.978378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.853 5.853 2 C 0.048 3.952 3 Si 0.965 3.035 4 H -0.269 1.269 5 H -0.278 1.278 6 H -0.247 1.247 7 C -0.471 4.471 8 H 0.055 0.945 9 C 0.086 3.914 10 C -0.257 4.257 11 C -0.089 4.089 12 C -0.230 4.230 13 C -0.075 4.075 14 C -0.174 4.174 15 C -0.059 4.059 16 C 0.515 3.485 17 O -0.574 6.574 18 N -0.511 5.511 19 N -0.529 5.529 20 C 0.362 3.638 21 N -0.545 5.545 22 C 0.141 3.859 23 C -0.193 4.193 24 C -0.054 4.054 25 C -0.045 4.045 26 F -0.147 7.147 27 H 0.291 0.709 28 H 0.091 0.909 29 H 0.122 0.878 30 H 0.129 0.871 31 H 0.129 0.871 32 H 0.103 0.897 33 H 0.131 0.869 34 H 0.439 0.561 35 H 0.435 0.565 36 H 0.201 0.799 37 H 0.185 0.815 38 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.885 -16.628 9.584 19.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.480 5.480 2 C -0.166 4.166 3 Si 0.789 3.211 4 H -0.195 1.195 5 H -0.205 1.205 6 H -0.171 1.171 7 C -0.501 4.501 8 H 0.074 0.926 9 C 0.083 3.917 10 C -0.276 4.276 11 C -0.107 4.107 12 C -0.249 4.249 13 C -0.093 4.093 14 C -0.176 4.176 15 C -0.100 4.100 16 C 0.303 3.697 17 O -0.451 6.451 18 N -0.260 5.260 19 N -0.257 5.257 20 C 0.126 3.874 21 N -0.264 5.264 22 C -0.016 4.016 23 C -0.215 4.215 24 C -0.080 4.080 25 C -0.072 4.072 26 F -0.127 7.127 27 H 0.101 0.899 28 H 0.108 0.892 29 H 0.140 0.860 30 H 0.147 0.853 31 H 0.147 0.853 32 H 0.121 0.879 33 H 0.149 0.851 34 H 0.282 0.718 35 H 0.278 0.722 36 H 0.217 0.783 37 H 0.202 0.798 38 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 3.053 -15.668 9.192 18.420 hybrid contribution -0.776 0.179 -1.203 1.443 sum 2.276 -15.489 7.988 17.576 Atomic orbital electron populations 1.69752 1.09211 1.31176 1.37866 1.26809 0.95223 1.04176 0.90421 0.85497 0.79938 0.76763 0.78917 1.19493 1.20473 1.17063 1.19342 0.94171 0.95048 1.41544 0.92641 1.17714 0.92474 0.91679 0.89818 1.21149 0.96926 1.04918 1.04649 1.20990 0.93055 0.98223 0.98456 1.20888 0.99806 1.00167 1.04063 1.20922 0.94422 0.97503 0.96424 1.19453 0.93722 1.01116 1.03333 1.20263 1.02182 0.90277 0.97293 1.21675 0.77346 0.82471 0.88193 1.90682 1.58925 1.79496 1.15949 1.44936 1.59368 1.12517 1.09140 1.43302 1.63139 1.12341 1.06920 1.18500 0.92917 0.85989 0.89993 1.67179 1.24249 1.32023 1.02954 1.23250 0.89673 0.87212 1.01476 1.22236 1.04148 1.01620 0.93517 1.21838 0.94583 0.96369 0.95249 1.18148 1.12424 0.98974 0.77703 1.91463 1.95527 1.96727 1.28939 0.89873 0.89166 0.86047 0.85308 0.85283 0.87916 0.85066 0.71750 0.72158 0.78283 0.79798 0.80664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -48.13 13.93 21.83 0.30 -47.82 16 2 C 0.05 2.61 5.41 85.26 0.46 3.07 16 3 Si 0.96 43.99 24.51 68.60 1.68 45.67 16 4 H -0.27 -11.98 6.71 99.48 0.67 -11.31 16 5 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 6 H -0.25 -11.28 6.85 99.48 0.68 -10.59 16 7 C -0.47 -26.68 8.56 23.46 0.20 -26.48 16 8 H 0.06 3.39 6.99 -2.91 -0.02 3.37 16 9 C 0.09 4.46 5.10 -21.29 -0.11 4.35 16 10 C -0.26 -12.82 7.17 22.73 0.16 -12.66 16 11 C -0.09 -3.83 10.02 22.22 0.22 -3.60 16 12 C -0.23 -9.07 10.05 22.46 0.23 -8.84 16 13 C -0.07 -2.97 9.66 22.22 0.21 -2.76 16 14 C -0.17 -7.82 4.43 -19.41 -0.09 -7.91 16 15 C -0.06 -2.20 5.19 29.10 0.15 -2.04 16 16 C 0.51 20.69 7.54 87.66 0.66 21.35 16 17 O -0.57 -28.52 15.87 -3.01 -0.05 -28.57 16 18 N -0.51 -17.02 6.29 -173.54 -1.09 -18.11 16 19 N -0.53 -17.53 6.42 -55.25 -0.35 -17.88 16 20 C 0.36 10.07 7.60 133.07 1.01 11.09 16 21 N -0.55 -12.93 9.37 -193.03 -1.81 -14.74 16 22 C 0.14 2.08 11.17 84.62 0.95 3.03 16 23 C -0.19 -2.14 10.10 22.37 0.23 -1.92 16 24 C -0.05 -0.84 10.15 22.48 0.23 -0.61 16 25 C -0.04 -1.09 7.35 22.59 0.17 -0.92 16 26 F -0.15 -4.06 16.65 44.97 0.75 -3.31 16 27 H 0.29 14.82 8.30 -92.70 -0.77 14.05 16 28 H 0.09 4.55 4.74 -2.91 -0.01 4.54 16 29 H 0.12 4.41 8.06 -2.91 -0.02 4.38 16 30 H 0.13 4.14 8.06 -2.91 -0.02 4.11 16 31 H 0.13 4.16 8.06 -2.91 -0.02 4.13 16 32 H 0.10 3.88 7.15 -2.39 -0.02 3.86 16 33 H 0.13 3.53 8.05 -2.38 -0.02 3.51 16 34 H 0.44 12.23 7.95 -213.32 -1.70 10.53 16 35 H 0.44 15.55 7.47 -213.32 -1.59 13.95 16 36 H 0.20 1.39 8.06 -2.91 -0.02 1.36 16 37 H 0.18 0.52 8.06 -2.91 -0.02 0.49 16 38 H 0.18 1.63 8.06 -2.91 -0.02 1.61 16 Total: -1.00 -74.63 332.23 1.90 -72.74 By element: Atomic # 1 Polarization: 39.10 SS G_CDS: -2.21 Total: 36.89 kcal Atomic # 6 Polarization: -29.55 SS G_CDS: 4.68 Total: -24.87 kcal Atomic # 7 Polarization: -95.60 SS G_CDS: -2.95 Total: -98.55 kcal Atomic # 8 Polarization: -28.52 SS G_CDS: -0.05 Total: -28.57 kcal Atomic # 9 Polarization: -4.06 SS G_CDS: 0.75 Total: -3.31 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 1.68 Total: 45.67 kcal Total: -74.63 1.90 -72.74 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000804213046.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.219 kcal (2) G-P(sol) polarization free energy of solvation -74.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds