Wall clock time and date at job start Fri Apr 10 2020 23:06:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86801 * 119.99736 * 2 1 4 4 H 1.48505 * 109.47160 * 359.97438 * 3 2 1 5 5 H 1.48495 * 109.47100 * 120.00151 * 3 2 1 6 6 H 1.48502 * 109.47051 * 240.00225 * 3 2 1 7 7 C 1.39937 * 120.00181 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00316 * 154.60639 * 7 2 1 9 9 C 1.41401 * 120.00394 * 334.60180 * 7 2 1 10 10 C 1.40739 * 120.23840 * 334.56896 * 9 7 2 11 11 C 1.37593 * 119.74077 * 180.02562 * 10 9 7 12 12 C 1.38658 * 120.25264 * 0.02562 * 11 10 9 13 13 C 1.38615 * 120.50051 * 0.02562 * 12 11 10 14 14 C 1.37643 * 120.24281 * 359.66907 * 13 12 11 15 15 C 1.50707 * 120.12639 * 180.31829 * 14 13 12 16 16 C 1.50694 * 109.47262 * 265.30991 * 15 14 13 17 17 O 1.21282 * 120.00405 * 0.02562 * 16 15 14 18 18 N 1.34773 * 120.00092 * 179.97438 * 16 15 14 19 19 N 1.40108 * 120.00399 * 179.97438 * 18 16 15 20 20 C 1.38989 * 119.99946 * 180.02562 * 19 18 16 21 21 C 1.39075 * 119.68688 * 180.02562 * 20 19 18 22 22 C 1.38372 * 119.15648 * 180.02562 * 21 20 19 23 23 C 1.38748 * 118.53695 * 359.97438 * 22 21 20 24 24 C 1.38369 * 119.30502 * 359.97438 * 23 22 21 25 25 F 1.35105 * 119.60189 * 180.02562 * 24 23 22 26 26 N 1.32140 * 120.79260 * 359.73112 * 24 23 22 27 27 H 0.96998 * 119.99709 * 174.17561 * 1 2 3 28 28 H 1.07996 * 120.12982 * 359.97438 * 10 9 7 29 29 H 1.08000 * 119.87342 * 180.02562 * 11 10 9 30 30 H 1.07996 * 119.75200 * 179.97438 * 12 11 10 31 31 H 1.07998 * 119.87807 * 179.97438 * 13 12 11 32 32 H 1.09001 * 109.47002 * 25.30721 * 15 14 13 33 33 H 1.08991 * 109.47139 * 145.30684 * 15 14 13 34 34 H 0.97000 * 120.00029 * 0.02562 * 18 16 15 35 35 H 0.97000 * 119.99572 * 0.02562 * 19 18 16 36 36 H 1.08003 * 120.42030 * 359.97438 * 21 20 19 37 37 H 1.08002 * 120.73044 * 180.02562 * 22 21 20 38 38 H 1.08005 * 120.34742 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 1.2771 2.7465 -0.0006 5 1 3.0960 1.6965 1.2124 6 1 3.0959 1.6965 -1.2125 7 6 2.0080 -1.2119 -0.0005 8 1 3.0097 -1.2569 -0.4016 9 6 1.4036 -2.3776 0.5241 10 6 0.3896 -2.2747 1.4946 11 6 -0.1912 -3.4157 1.9986 12 6 0.2195 -4.6634 1.5543 13 6 1.2180 -4.7766 0.5996 14 6 1.8086 -3.6485 0.0769 15 6 2.8891 -3.7745 -0.9661 16 6 4.2391 -3.7413 -0.2975 17 8 4.3165 -3.6271 0.9074 18 7 5.3607 -3.8395 -1.0384 19 7 6.6159 -3.8081 -0.4169 20 6 7.7725 -3.9089 -1.1811 21 6 9.0151 -3.8775 -0.5573 22 6 10.1594 -3.9782 -1.3288 23 6 10.0228 -4.1079 -2.7034 24 6 8.7556 -4.1332 -3.2587 25 9 8.6156 -4.2598 -4.5965 26 7 7.6807 -4.0408 -2.4957 27 1 -0.4849 -0.8357 -0.0852 28 1 0.0691 -1.3040 1.8430 29 1 -0.9698 -3.3393 2.7431 30 1 -0.2416 -5.5537 1.9556 31 1 1.5304 -5.7534 0.2610 32 1 2.7709 -4.7177 -1.4995 33 1 2.8121 -2.9465 -1.6708 34 1 5.2988 -3.9312 -2.0021 35 1 6.6778 -3.7160 0.5468 36 1 9.0861 -3.7751 0.5155 37 1 11.1373 -3.9571 -0.8709 38 1 10.8963 -4.1883 -3.3335 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000804766665.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:06:46 Heat of formation + Delta-G solvation = 10.230973 kcal Electronic energy + Delta-G solvation = -24738.397047 eV Core-core repulsion = 20882.231806 eV Total energy + Delta-G solvation = -3856.165242 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.112 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.18809 -40.48864 -39.33368 -37.66161 -35.80160 -33.87843 -32.76164 -32.43099 -31.56115 -29.25202 -28.81094 -26.62159 -24.92494 -23.84261 -23.24681 -21.17597 -20.96141 -19.89326 -18.74166 -18.01510 -17.71461 -16.81305 -16.35484 -16.28117 -16.19602 -15.25106 -15.22096 -14.95328 -14.29631 -14.24367 -13.97951 -13.85972 -13.47213 -13.44981 -13.33080 -12.55061 -12.36423 -12.06479 -11.79993 -11.76300 -11.25174 -11.17894 -10.88558 -10.49674 -10.40065 -10.22398 -10.05528 -9.69549 -9.55021 -9.41045 -9.38000 -8.98007 -7.59788 -7.56827 -7.53947 -7.15206 -4.45451 0.80508 1.01684 1.91459 2.77240 2.84212 3.05980 3.15231 3.18666 3.27921 3.36266 3.45854 4.00990 4.15676 4.47284 4.56582 4.65406 4.87114 5.00334 5.31136 5.45376 5.56729 5.58831 5.81841 5.88527 5.91438 6.14133 6.25684 6.28798 6.33459 6.62070 6.71390 6.97336 7.07860 7.17660 7.38802 7.55236 7.67716 7.80192 7.82002 7.84869 7.92927 8.17863 8.31548 8.65782 8.75200 8.89472 10.05026 Molecular weight = 315.11amu Principal moments of inertia in cm(-1) A = 0.014164 B = 0.003436 C = 0.003035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1976.359498 B = 8147.488061 C = 9224.606791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.796 5.796 2 C 0.041 3.959 3 Si 1.060 2.940 4 H -0.273 1.273 5 H -0.275 1.275 6 H -0.277 1.277 7 C -0.516 4.516 8 H 0.072 0.928 9 C 0.117 3.883 10 C -0.216 4.216 11 C -0.084 4.084 12 C -0.254 4.254 13 C -0.065 4.065 14 C -0.189 4.189 15 C -0.057 4.057 16 C 0.515 3.485 17 O -0.522 6.522 18 N -0.533 5.533 19 N -0.508 5.508 20 C 0.445 3.555 21 C -0.246 4.246 22 C 0.000 4.000 23 C -0.263 4.263 24 C 0.363 3.637 25 F -0.112 7.112 26 N -0.583 5.583 27 H 0.300 0.700 28 H 0.105 0.895 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.083 0.917 33 H 0.102 0.898 34 H 0.428 0.572 35 H 0.444 0.556 36 H 0.143 0.857 37 H 0.146 0.854 38 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.814 -5.830 -4.805 18.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.181 4.181 3 Si 0.884 3.116 4 H -0.198 1.198 5 H -0.201 1.201 6 H -0.202 1.202 7 C -0.544 4.544 8 H 0.090 0.910 9 C 0.114 3.886 10 C -0.235 4.235 11 C -0.103 4.103 12 C -0.273 4.273 13 C -0.084 4.084 14 C -0.191 4.191 15 C -0.098 4.098 16 C 0.303 3.697 17 O -0.394 6.394 18 N -0.283 5.283 19 N -0.234 5.234 20 C 0.206 3.794 21 C -0.273 4.273 22 C -0.025 4.025 23 C -0.288 4.288 24 C 0.209 3.791 25 F -0.091 7.091 26 N -0.309 5.309 27 H 0.113 0.887 28 H 0.123 0.877 29 H 0.107 0.893 30 H 0.106 0.894 31 H 0.105 0.895 32 H 0.101 0.899 33 H 0.120 0.880 34 H 0.270 0.730 35 H 0.289 0.711 36 H 0.161 0.839 37 H 0.164 0.836 38 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 15.543 -4.120 -4.336 16.654 hybrid contribution 0.934 -1.737 -0.008 1.972 sum 16.477 -5.856 -4.344 18.018 Atomic orbital electron populations 1.70455 1.08187 1.34326 1.28950 1.26926 0.95657 1.04166 0.91340 0.83712 0.75764 0.74169 0.78001 1.19793 1.20068 1.20215 1.20457 1.02709 0.94060 1.37211 0.90994 1.17386 0.90197 0.91739 0.89230 1.21147 1.03494 0.97027 1.01803 1.20621 0.98189 0.93227 0.98236 1.20268 1.04967 0.95848 1.06207 1.20371 0.95989 0.95803 0.96213 1.18922 1.02796 0.93650 1.03752 1.20175 0.87878 1.03225 0.98534 1.21764 0.84449 0.75327 0.88165 1.90700 1.86558 1.47806 1.14379 1.45419 0.94908 1.77844 1.10127 1.43374 0.94177 1.78018 1.07799 1.17715 0.85273 0.90046 0.86356 1.21202 0.90535 1.13645 1.01893 1.21113 0.98583 0.90661 0.92165 1.21441 0.96542 1.14076 0.96744 1.17608 0.88987 0.94323 0.78204 1.91634 1.96634 1.92395 1.28484 1.66086 1.34165 1.25216 1.05428 0.88661 0.87699 0.89312 0.89369 0.89482 0.89920 0.88029 0.73014 0.71109 0.83949 0.83590 0.83847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.91 12.32 55.55 0.68 -20.22 16 2 C 0.04 1.04 4.94 -17.34 -0.09 0.95 16 3 Si 1.06 21.91 30.00 -169.99 -5.10 16.81 16 4 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 5 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 6 H -0.28 -5.43 7.11 56.52 0.40 -5.02 16 7 C -0.52 -13.42 8.08 -37.74 -0.30 -13.73 16 8 H 0.07 1.84 6.73 -52.49 -0.35 1.49 16 9 C 0.12 3.06 5.30 -106.82 -0.57 2.49 16 10 C -0.22 -5.59 7.95 -38.87 -0.31 -5.90 16 11 C -0.08 -1.99 10.02 -39.66 -0.40 -2.39 16 12 C -0.25 -5.74 10.05 -39.29 -0.39 -6.14 16 13 C -0.07 -1.47 9.66 -39.66 -0.38 -1.85 16 14 C -0.19 -4.43 4.43 -103.91 -0.46 -4.89 16 15 C -0.06 -1.09 5.18 -29.03 -0.15 -1.24 16 16 C 0.52 9.83 7.58 -10.99 -0.08 9.74 16 17 O -0.52 -11.94 15.87 5.56 0.09 -11.85 16 18 N -0.53 -8.30 6.29 31.22 0.20 -8.11 16 19 N -0.51 -7.05 6.42 31.12 0.20 -6.85 16 20 C 0.44 5.50 7.59 -155.03 -1.18 4.32 16 21 C -0.25 -2.25 9.93 -39.22 -0.39 -2.64 16 22 C 0.00 0.00 10.16 -39.34 -0.40 -0.40 16 23 C -0.26 -2.27 10.08 -39.34 -0.40 -2.66 16 24 C 0.36 4.24 8.41 -17.37 -0.15 4.09 16 25 F -0.11 -1.34 17.29 2.25 0.04 -1.30 16 26 N -0.58 -7.80 9.38 -12.78 -0.12 -7.92 16 27 H 0.30 8.05 6.68 -40.82 -0.27 7.77 16 28 H 0.11 2.80 6.49 -52.49 -0.34 2.46 16 29 H 0.09 1.87 8.06 -52.49 -0.42 1.44 16 30 H 0.09 1.77 8.06 -52.49 -0.42 1.35 16 31 H 0.09 1.71 8.06 -52.49 -0.42 1.28 16 32 H 0.08 1.30 8.05 -51.93 -0.42 0.88 16 33 H 0.10 1.92 7.06 -51.93 -0.37 1.55 16 34 H 0.43 6.03 7.95 -182.59 -1.45 4.58 16 35 H 0.44 5.90 7.99 -182.59 -1.46 4.44 16 36 H 0.14 0.98 8.06 -52.48 -0.42 0.56 16 37 H 0.15 0.58 8.06 -52.49 -0.42 0.16 16 38 H 0.14 0.88 8.06 -52.48 -0.42 0.46 16 LS Contribution 337.55 15.07 5.09 5.09 Total: -1.00 -31.02 337.55 -10.56 -41.59 By element: Atomic # 1 Polarization: 18.99 SS G_CDS: -5.99 Total: 12.99 kcal Atomic # 6 Polarization: -14.58 SS G_CDS: -5.64 Total: -20.22 kcal Atomic # 7 Polarization: -44.06 SS G_CDS: 0.96 Total: -43.10 kcal Atomic # 8 Polarization: -11.94 SS G_CDS: 0.09 Total: -11.85 kcal Atomic # 9 Polarization: -1.34 SS G_CDS: 0.04 Total: -1.30 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.10 Total: 16.81 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -31.02 -10.56 -41.59 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000804766665.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.816 kcal (2) G-P(sol) polarization free energy of solvation -31.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.585 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds