Wall clock time and date at job start Fri Apr 10 2020 23:06:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86801 * 119.99736 * 2 1 4 4 H 1.48505 * 109.47160 * 359.97438 * 3 2 1 5 5 H 1.48495 * 109.47100 * 120.00151 * 3 2 1 6 6 H 1.48502 * 109.47051 * 240.00225 * 3 2 1 7 7 C 1.39937 * 120.00181 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00316 * 154.60639 * 7 2 1 9 9 C 1.41401 * 120.00394 * 334.60180 * 7 2 1 10 10 C 1.40739 * 120.23840 * 334.56896 * 9 7 2 11 11 C 1.37593 * 119.74077 * 180.02562 * 10 9 7 12 12 C 1.38658 * 120.25264 * 0.02562 * 11 10 9 13 13 C 1.38615 * 120.50051 * 0.02562 * 12 11 10 14 14 C 1.37643 * 120.24281 * 359.66907 * 13 12 11 15 15 C 1.50707 * 120.12639 * 180.31829 * 14 13 12 16 16 C 1.50694 * 109.47262 * 265.30991 * 15 14 13 17 17 O 1.21282 * 120.00405 * 0.02562 * 16 15 14 18 18 N 1.34773 * 120.00092 * 179.97438 * 16 15 14 19 19 N 1.40108 * 120.00399 * 179.97438 * 18 16 15 20 20 C 1.38989 * 119.99946 * 180.02562 * 19 18 16 21 21 C 1.39075 * 119.68688 * 180.02562 * 20 19 18 22 22 C 1.38372 * 119.15648 * 180.02562 * 21 20 19 23 23 C 1.38748 * 118.53695 * 359.97438 * 22 21 20 24 24 C 1.38369 * 119.30502 * 359.97438 * 23 22 21 25 25 F 1.35105 * 119.60189 * 180.02562 * 24 23 22 26 26 N 1.32140 * 120.79260 * 359.73112 * 24 23 22 27 27 H 0.96998 * 119.99709 * 174.17561 * 1 2 3 28 28 H 1.07996 * 120.12982 * 359.97438 * 10 9 7 29 29 H 1.08000 * 119.87342 * 180.02562 * 11 10 9 30 30 H 1.07996 * 119.75200 * 179.97438 * 12 11 10 31 31 H 1.07998 * 119.87807 * 179.97438 * 13 12 11 32 32 H 1.09001 * 109.47002 * 25.30721 * 15 14 13 33 33 H 1.08991 * 109.47139 * 145.30684 * 15 14 13 34 34 H 0.97000 * 120.00029 * 0.02562 * 18 16 15 35 35 H 0.97000 * 119.99572 * 0.02562 * 19 18 16 36 36 H 1.08003 * 120.42030 * 359.97438 * 21 20 19 37 37 H 1.08002 * 120.73044 * 180.02562 * 22 21 20 38 38 H 1.08005 * 120.34742 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 1.2771 2.7465 -0.0006 5 1 3.0960 1.6965 1.2124 6 1 3.0959 1.6965 -1.2125 7 6 2.0080 -1.2119 -0.0005 8 1 3.0097 -1.2569 -0.4016 9 6 1.4036 -2.3776 0.5241 10 6 0.3896 -2.2747 1.4946 11 6 -0.1912 -3.4157 1.9986 12 6 0.2195 -4.6634 1.5543 13 6 1.2180 -4.7766 0.5996 14 6 1.8086 -3.6485 0.0769 15 6 2.8891 -3.7745 -0.9661 16 6 4.2391 -3.7413 -0.2975 17 8 4.3165 -3.6271 0.9074 18 7 5.3607 -3.8395 -1.0384 19 7 6.6159 -3.8081 -0.4169 20 6 7.7725 -3.9089 -1.1811 21 6 9.0151 -3.8775 -0.5573 22 6 10.1594 -3.9782 -1.3288 23 6 10.0228 -4.1079 -2.7034 24 6 8.7556 -4.1332 -3.2587 25 9 8.6156 -4.2598 -4.5965 26 7 7.6807 -4.0408 -2.4957 27 1 -0.4849 -0.8357 -0.0852 28 1 0.0691 -1.3040 1.8430 29 1 -0.9698 -3.3393 2.7431 30 1 -0.2416 -5.5537 1.9556 31 1 1.5304 -5.7534 0.2610 32 1 2.7709 -4.7177 -1.4995 33 1 2.8121 -2.9465 -1.6708 34 1 5.2988 -3.9312 -2.0021 35 1 6.6778 -3.7160 0.5468 36 1 9.0861 -3.7751 0.5155 37 1 11.1373 -3.9571 -0.8709 38 1 10.8963 -4.1883 -3.3335 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000804766665.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:06:46 Heat of formation + Delta-G solvation = -7.966585 kcal Electronic energy + Delta-G solvation = -24739.186153 eV Core-core repulsion = 20882.231806 eV Total energy + Delta-G solvation = -3856.954347 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.112 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -50.03328 -41.45908 -40.70599 -39.38433 -36.99291 -35.75367 -33.90457 -33.52871 -32.90855 -31.11919 -29.90018 -28.16404 -26.77150 -24.67275 -24.13151 -22.84465 -22.61441 -21.46195 -19.91853 -19.45833 -19.06115 -18.02338 -17.24366 -17.16343 -17.00254 -16.82640 -16.69465 -16.28847 -15.98662 -15.81130 -15.42222 -14.97531 -14.77165 -14.70789 -14.22514 -14.09075 -13.88265 -13.57310 -13.18201 -13.02015 -13.00632 -12.65049 -12.56573 -12.26057 -12.00577 -11.51162 -11.23967 -11.15989 -11.00847 -10.86335 -10.83698 -10.38342 -9.46340 -9.44682 -9.07547 -8.59489 -6.41545 0.02534 0.27644 0.69075 0.97999 1.08786 1.45790 1.60267 1.61504 1.74401 2.27963 2.29614 2.65579 2.69511 3.21879 3.53718 3.78580 3.84358 3.96805 4.19906 4.24716 4.27199 4.41914 4.47404 4.55222 4.68393 4.74894 4.93604 4.97181 5.07031 5.20594 5.30854 5.38937 5.48758 5.74039 5.81143 5.83310 5.96749 6.00970 6.05272 6.27993 6.41157 6.45398 6.81024 6.84370 7.00269 7.31320 8.07517 Molecular weight = 315.11amu Principal moments of inertia in cm(-1) A = 0.014164 B = 0.003436 C = 0.003035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1976.359498 B = 8147.488061 C = 9224.606791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.818 5.818 2 C 0.006 3.994 3 Si 1.106 2.894 4 H -0.268 1.268 5 H -0.273 1.273 6 H -0.258 1.258 7 C -0.542 4.542 8 H 0.067 0.933 9 C 0.088 3.912 10 C -0.244 4.244 11 C -0.094 4.094 12 C -0.250 4.250 13 C -0.077 4.077 14 C -0.191 4.191 15 C -0.058 4.058 16 C 0.519 3.481 17 O -0.568 6.568 18 N -0.519 5.519 19 N -0.519 5.519 20 C 0.419 3.581 21 C -0.236 4.236 22 C 0.010 3.990 23 C -0.243 4.243 24 C 0.329 3.671 25 F -0.122 7.122 26 N -0.613 5.613 27 H 0.285 0.715 28 H 0.084 0.916 29 H 0.110 0.890 30 H 0.120 0.880 31 H 0.121 0.879 32 H 0.119 0.881 33 H 0.099 0.901 34 H 0.435 0.565 35 H 0.444 0.556 36 H 0.167 0.833 37 H 0.192 0.808 38 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.796 -6.959 -5.117 21.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.442 5.442 2 C -0.210 4.210 3 Si 0.924 3.076 4 H -0.193 1.193 5 H -0.199 1.199 6 H -0.182 1.182 7 C -0.570 4.570 8 H 0.085 0.915 9 C 0.086 3.914 10 C -0.264 4.264 11 C -0.113 4.113 12 C -0.269 4.269 13 C -0.095 4.095 14 C -0.193 4.193 15 C -0.099 4.099 16 C 0.307 3.693 17 O -0.444 6.444 18 N -0.267 5.267 19 N -0.249 5.249 20 C 0.184 3.816 21 C -0.262 4.262 22 C -0.015 4.015 23 C -0.267 4.267 24 C 0.176 3.824 25 F -0.101 7.101 26 N -0.339 5.339 27 H 0.097 0.903 28 H 0.102 0.898 29 H 0.128 0.872 30 H 0.138 0.862 31 H 0.139 0.861 32 H 0.137 0.863 33 H 0.117 0.883 34 H 0.278 0.722 35 H 0.289 0.711 36 H 0.184 0.816 37 H 0.209 0.791 38 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 18.574 -5.278 -4.725 19.879 hybrid contribution 0.166 -1.586 0.052 1.595 sum 18.740 -6.864 -4.674 20.497 Atomic orbital electron populations 1.70553 1.08836 1.33288 1.31500 1.28160 0.95722 1.07060 0.90080 0.83136 0.74943 0.70776 0.78712 1.19288 1.19874 1.18210 1.20547 1.02680 0.94999 1.38780 0.91468 1.17752 0.90777 0.93158 0.89747 1.21154 1.05028 0.97034 1.03158 1.20914 0.98598 0.93129 0.98633 1.20722 1.04357 0.96412 1.05419 1.20819 0.95654 0.97039 0.95963 1.19382 1.03141 0.93036 1.03748 1.20179 0.87145 1.05069 0.97482 1.21452 0.85201 0.75167 0.87475 1.90675 1.87218 1.50446 1.16083 1.45006 0.95604 1.75934 1.10154 1.43437 0.93434 1.80078 1.07909 1.18049 0.85656 0.91678 0.86259 1.21611 0.89615 1.11624 1.03377 1.21677 0.99861 0.88513 0.91418 1.21877 0.96063 1.10952 0.97770 1.18015 0.89900 0.96453 0.77986 1.91607 1.96739 1.92717 1.29082 1.65900 1.35848 1.25860 1.06280 0.90274 0.89802 0.87192 0.86243 0.86146 0.86269 0.88274 0.72236 0.71086 0.81574 0.79061 0.80921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -44.85 12.32 21.82 0.27 -44.58 16 2 C 0.01 0.33 4.94 85.25 0.42 0.75 16 3 Si 1.11 45.05 30.00 68.60 2.06 47.11 16 4 H -0.27 -10.62 7.11 99.48 0.71 -9.91 16 5 H -0.27 -10.95 7.11 99.48 0.71 -10.25 16 6 H -0.26 -9.62 7.11 99.48 0.71 -8.91 16 7 C -0.54 -29.22 8.08 23.46 0.19 -29.03 16 8 H 0.07 3.57 6.73 -2.91 -0.02 3.55 16 9 C 0.09 4.75 5.30 -21.29 -0.11 4.64 16 10 C -0.24 -13.17 7.95 22.73 0.18 -12.98 16 11 C -0.09 -4.49 10.02 22.22 0.22 -4.27 16 12 C -0.25 -10.95 10.05 22.46 0.23 -10.73 16 13 C -0.08 -3.33 9.66 22.22 0.21 -3.11 16 14 C -0.19 -8.97 4.43 -19.40 -0.09 -9.05 16 15 C -0.06 -2.19 5.18 29.10 0.15 -2.04 16 16 C 0.52 19.85 7.58 87.66 0.66 20.51 16 17 O -0.57 -26.37 15.87 -3.04 -0.05 -26.42 16 18 N -0.52 -16.09 6.29 -173.54 -1.09 -17.18 16 19 N -0.52 -14.18 6.42 -55.46 -0.36 -14.54 16 20 C 0.42 9.84 7.59 133.04 1.01 10.85 16 21 C -0.24 -3.60 9.93 22.50 0.22 -3.38 16 22 C 0.01 0.11 10.16 22.42 0.23 0.34 16 23 C -0.24 -3.32 10.08 22.42 0.23 -3.10 16 24 C 0.33 7.21 8.41 84.68 0.71 7.92 16 25 F -0.12 -2.83 17.29 44.97 0.78 -2.05 16 26 N -0.61 -15.92 9.38 -194.34 -1.82 -17.74 16 27 H 0.28 16.18 6.68 -92.71 -0.62 15.56 16 28 H 0.08 4.76 6.49 -2.91 -0.02 4.74 16 29 H 0.11 4.60 8.06 -2.91 -0.02 4.58 16 30 H 0.12 4.43 8.06 -2.91 -0.02 4.41 16 31 H 0.12 4.36 8.06 -2.91 -0.02 4.34 16 32 H 0.12 3.54 8.05 -2.39 -0.02 3.52 16 33 H 0.10 3.79 7.06 -2.39 -0.02 3.78 16 34 H 0.43 12.17 7.95 -213.32 -1.70 10.47 16 35 H 0.44 11.73 7.99 -213.32 -1.71 10.02 16 36 H 0.17 1.70 8.06 -2.91 -0.02 1.67 16 37 H 0.19 0.30 8.06 -2.91 -0.02 0.28 16 38 H 0.17 1.33 8.06 -2.91 -0.02 1.31 16 Total: -1.00 -71.07 337.55 2.14 -68.93 By element: Atomic # 1 Polarization: 41.27 SS G_CDS: -2.11 Total: 39.15 kcal Atomic # 6 Polarization: -37.15 SS G_CDS: 4.47 Total: -32.68 kcal Atomic # 7 Polarization: -91.04 SS G_CDS: -3.00 Total: -94.04 kcal Atomic # 8 Polarization: -26.37 SS G_CDS: -0.05 Total: -26.42 kcal Atomic # 9 Polarization: -2.83 SS G_CDS: 0.78 Total: -2.05 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.06 Total: 47.11 kcal Total: -71.07 2.14 -68.93 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000804766665.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.964 kcal (2) G-P(sol) polarization free energy of solvation -71.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds