Wall clock time and date at job start Fri Apr 10 2020 23:06:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47397 * 2 1 4 4 C 1.52996 * 109.47406 * 239.99431 * 2 1 3 5 5 C 1.50701 * 109.46820 * 59.99928 * 4 2 1 6 6 H 1.08000 * 120.00070 * 0.02562 * 5 4 2 7 7 C 1.37878 * 120.00019 * 179.97438 * 5 4 2 8 8 N 1.31515 * 120.00228 * 0.02562 * 7 5 4 9 9 Si 1.86807 * 120.00068 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.46685 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.46910 * 120.00333 * 9 7 5 12 12 H 1.48502 * 109.47120 * 240.00671 * 9 7 5 13 13 C 1.53004 * 109.46923 * 119.99895 * 2 1 3 14 14 N 1.46901 * 109.46916 * 299.99733 * 13 2 1 15 15 C 1.46905 * 110.99870 * 180.02562 * 14 13 2 16 16 C 1.50697 * 109.47066 * 180.02562 * 15 14 13 17 17 C 1.38711 * 120.03230 * 90.00195 * 16 15 14 18 18 O 1.35921 * 120.03468 * 359.95212 * 17 16 15 19 19 C 1.38713 * 119.94203 * 179.97438 * 17 16 15 20 20 C 1.38190 * 120.00218 * 359.97438 * 19 17 16 21 21 C 1.38304 * 120.06508 * 359.97438 * 20 19 17 22 22 Cl 1.73595 * 119.96869 * 180.02562 * 21 20 19 23 23 C 1.38324 * 120.03689 * 269.72572 * 16 15 14 24 24 F 1.35103 * 119.99828 * 359.97438 * 23 16 15 25 25 H 1.09002 * 109.47301 * 300.00132 * 1 2 3 26 26 H 1.09001 * 109.47017 * 60.00685 * 1 2 3 27 27 H 1.09005 * 109.47249 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46999 * 179.97438 * 3 2 1 29 29 H 1.09001 * 109.46478 * 299.99645 * 3 2 1 30 30 H 1.08993 * 109.47197 * 59.99666 * 3 2 1 31 31 H 1.08993 * 109.47740 * 180.02562 * 4 2 1 32 32 H 1.09005 * 109.47573 * 300.00304 * 4 2 1 33 33 H 0.97002 * 120.00555 * 179.97438 * 8 7 5 34 34 H 1.09004 * 109.46889 * 180.02562 * 13 2 1 35 35 H 1.08995 * 109.47384 * 59.99754 * 13 2 1 36 36 H 1.00901 * 111.00067 * 303.95263 * 14 13 2 37 37 H 1.09001 * 109.46798 * 300.00327 * 15 14 13 38 38 H 1.08998 * 109.46961 * 60.00043 * 15 14 13 39 39 H 0.96699 * 113.99852 * 89.99737 * 18 17 16 40 40 H 1.07995 * 120.00276 * 179.97438 * 19 17 16 41 41 H 1.07993 * 119.97119 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 1.5377 -0.0110 -2.4796 6 1 0.9171 0.8673 -2.3806 7 6 1.8712 -0.4818 -3.7319 8 7 2.6274 -1.5511 -3.8525 9 14 1.2491 0.3991 -5.2572 10 1 0.4245 1.5661 -4.8530 11 1 2.4045 0.8658 -6.0650 12 1 0.4243 -0.5341 -6.0660 13 6 2.0399 -0.7213 1.2493 14 7 1.5503 -0.0286 2.4487 15 6 2.0218 -0.6944 3.6704 16 6 1.5001 0.0422 4.8771 17 6 0.2798 -0.3124 5.4331 18 8 -0.4471 -1.3241 4.8895 19 6 -0.1983 0.3666 6.5442 20 6 0.5412 1.3950 7.0966 21 6 1.7585 1.7481 6.5431 22 17 2.6857 3.0399 7.2394 23 6 2.2404 1.0690 5.4350 24 9 3.4320 1.4115 4.8983 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3634 -1.0277 0.0005 28 1 3.1301 1.4424 0.0005 29 1 1.6767 1.9562 -0.8901 30 1 1.6767 1.9563 0.8899 31 1 3.1300 -0.7218 -1.2489 32 1 1.6767 -1.7491 -1.2491 33 1 2.8618 -1.8826 -4.7335 34 1 3.1300 -0.7209 1.2495 35 1 1.6766 -1.7489 1.2494 36 1 1.8198 0.9437 2.4401 37 1 1.6586 -1.7220 3.6874 38 1 3.1116 -0.6939 3.6870 39 1 -0.2487 -2.1946 5.2608 40 1 -1.1484 0.0915 6.9776 41 1 0.1687 1.9230 7.9619 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000808429354.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:06:48 Heat of formation + Delta-G solvation = -83.961446 kcal Electronic energy + Delta-G solvation = -24007.553005 eV Core-core repulsion = 20248.410767 eV Total energy + Delta-G solvation = -3759.142238 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.114 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.25851 -40.22316 -37.65187 -37.41581 -36.33527 -34.67403 -32.37474 -30.99107 -29.87650 -27.11755 -26.32557 -26.21825 -24.41131 -23.09197 -22.36246 -21.67945 -19.04712 -17.94288 -17.52183 -17.05899 -16.47562 -16.17392 -16.10733 -15.27930 -15.02956 -14.73418 -14.27835 -14.23224 -14.02009 -13.40409 -13.24799 -13.05061 -12.92576 -12.56668 -12.41542 -11.99716 -11.87269 -11.69939 -11.49677 -11.32904 -11.00409 -10.91255 -10.84086 -10.72762 -10.46360 -10.24506 -10.08700 -9.65545 -9.30143 -8.97271 -8.88433 -8.79159 -8.29608 -8.10858 -5.94053 -3.93823 0.50762 0.62298 1.65753 2.88717 3.34292 3.42050 3.45955 3.52663 3.92356 4.20982 4.44003 4.48888 4.57893 4.73002 5.04167 5.15693 5.39787 5.41950 5.49699 5.54312 5.61508 5.74382 5.78174 5.93171 6.01640 6.16625 6.26368 6.35750 6.54172 6.71285 6.82294 6.87465 7.19943 7.24272 7.29537 7.29972 7.39028 7.61984 7.73329 7.88212 8.06545 8.51236 9.11752 9.68933 11.17703 Molecular weight = 315.11amu Principal moments of inertia in cm(-1) A = 0.022745 B = 0.002785 C = 0.002641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.737043 B =10052.485637 C =10601.428893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.058 4.058 3 C -0.129 4.129 4 C 0.034 3.966 5 C -0.505 4.505 6 H 0.060 0.940 7 C 0.054 3.946 8 N -0.898 5.898 9 Si 0.887 3.113 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.285 1.285 13 C 0.071 3.929 14 N -0.674 5.674 15 C 0.103 3.897 16 C -0.129 4.129 17 C 0.165 3.835 18 O -0.477 6.477 19 C -0.147 4.147 20 C -0.069 4.069 21 C -0.087 4.087 22 Cl -0.051 7.051 23 C 0.130 3.870 24 F -0.121 7.121 25 H 0.042 0.958 26 H 0.054 0.946 27 H 0.039 0.961 28 H 0.040 0.960 29 H 0.064 0.936 30 H 0.032 0.968 31 H 0.012 0.988 32 H 0.015 0.985 33 H 0.258 0.742 34 H 0.024 0.976 35 H 0.068 0.932 36 H 0.339 0.661 37 H 0.087 0.913 38 H 0.040 0.960 39 H 0.394 0.606 40 H 0.145 0.855 41 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.137 3.056 25.961 26.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.058 4.058 3 C -0.187 4.187 4 C -0.004 4.004 5 C -0.543 4.543 6 H 0.078 0.922 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.715 3.285 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.212 1.212 13 C -0.057 4.057 14 N -0.306 5.306 15 C -0.026 4.026 16 C -0.131 4.131 17 C 0.119 3.881 18 O -0.287 6.287 19 C -0.166 4.166 20 C -0.088 4.088 21 C -0.114 4.114 22 Cl -0.022 7.022 23 C 0.109 3.891 24 F -0.099 7.099 25 H 0.061 0.939 26 H 0.073 0.927 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.083 0.917 30 H 0.051 0.949 31 H 0.031 0.969 32 H 0.033 0.967 33 H 0.068 0.932 34 H 0.043 0.957 35 H 0.087 0.913 36 H 0.158 0.842 37 H 0.106 0.894 38 H 0.058 0.942 39 H 0.251 0.749 40 H 0.163 0.837 41 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -3.772 3.178 25.512 25.984 hybrid contribution 1.200 0.460 -0.704 1.466 sum -2.572 3.639 24.808 25.205 Atomic orbital electron populations 1.21587 0.94875 1.00595 1.00159 1.20631 0.95961 0.94978 0.94261 1.21774 0.99714 0.96774 1.00417 1.19124 0.95878 0.95196 0.90153 1.21282 1.30589 1.11881 0.90589 0.92223 1.25017 0.95424 0.95136 0.99054 1.69976 1.37416 1.23271 1.23150 0.86611 0.78588 0.79760 0.83503 1.19762 1.21213 1.21160 1.22143 0.96369 0.98190 0.89043 1.60639 1.63317 1.06314 1.00317 1.20648 0.96969 0.98091 0.86924 1.20258 0.95013 0.98114 0.99746 1.18014 0.88200 0.91311 0.90589 1.84932 1.61949 1.17637 1.64194 1.21460 1.01405 0.97629 0.96087 1.20799 0.91598 0.96583 0.99833 1.20947 0.96381 0.96227 0.97862 1.98391 1.72837 1.47600 1.83346 1.17090 0.83122 0.95737 0.93135 1.91562 1.42385 1.90983 1.84980 0.93883 0.92744 0.94147 0.94073 0.91653 0.94903 0.96921 0.96655 0.93248 0.95750 0.91344 0.84249 0.89429 0.94187 0.74918 0.83708 0.83606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.29 8.06 37.16 0.30 -1.99 16 2 C -0.06 -1.18 0.60 -154.51 -0.09 -1.27 16 3 C -0.13 -2.50 7.89 37.16 0.29 -2.20 16 4 C 0.03 0.86 4.04 -27.88 -0.11 0.75 16 5 C -0.51 -13.97 7.65 -34.44 -0.26 -14.23 16 6 H 0.06 1.61 5.68 -52.49 -0.30 1.32 16 7 C 0.05 1.54 5.46 -17.82 -0.10 1.45 16 8 N -0.90 -27.04 13.29 55.43 0.74 -26.31 16 9 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 10 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 12 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 13 C 0.07 1.24 4.65 -3.82 -0.02 1.22 16 14 N -0.67 -10.18 5.70 -115.05 -0.66 -10.84 16 15 C 0.10 1.28 5.42 -4.97 -0.03 1.25 16 16 C -0.13 -1.44 5.41 -104.42 -0.56 -2.01 16 17 C 0.17 1.58 6.68 -39.23 -0.26 1.32 16 18 O -0.48 -4.35 12.55 -19.49 -0.24 -4.60 16 19 C -0.15 -1.12 9.98 -39.42 -0.39 -1.52 16 20 C -0.07 -0.53 9.82 -39.57 -0.39 -0.92 16 21 C -0.09 -0.86 6.33 -39.42 -0.25 -1.11 16 22 Cl -0.05 -0.49 28.61 -51.86 -1.48 -1.97 16 23 C 0.13 1.49 7.21 -39.41 -0.28 1.21 16 24 F -0.12 -1.56 16.04 2.25 0.04 -1.52 16 25 H 0.04 0.79 7.60 -51.93 -0.39 0.40 16 26 H 0.05 1.16 6.62 -51.93 -0.34 0.81 16 27 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 28 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 29 H 0.06 1.36 6.62 -51.93 -0.34 1.01 16 30 H 0.03 0.55 6.57 -51.93 -0.34 0.21 16 31 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 34 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.34 5.21 6.76 -39.29 -0.27 4.94 16 37 H 0.09 1.00 7.53 -51.93 -0.39 0.61 16 38 H 0.04 0.51 7.63 -51.93 -0.40 0.11 16 39 H 0.39 1.60 9.06 45.56 0.41 2.01 16 40 H 0.15 0.77 8.06 -52.49 -0.42 0.35 16 41 H 0.15 0.76 8.06 -52.49 -0.42 0.34 16 LS Contribution 353.60 15.07 5.33 5.33 Total: -1.00 -31.58 353.60 -8.34 -39.92 By element: Atomic # 1 Polarization: 6.13 SS G_CDS: -4.88 Total: 1.25 kcal Atomic # 6 Polarization: -15.89 SS G_CDS: -2.16 Total: -18.05 kcal Atomic # 7 Polarization: -37.22 SS G_CDS: 0.08 Total: -37.14 kcal Atomic # 8 Polarization: -4.35 SS G_CDS: -0.24 Total: -4.60 kcal Atomic # 9 Polarization: -1.56 SS G_CDS: 0.04 Total: -1.52 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Atomic # 17 Polarization: -0.49 SS G_CDS: -1.48 Total: -1.97 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -31.58 -8.34 -39.92 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000808429354.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.042 kcal (2) G-P(sol) polarization free energy of solvation -31.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds