Wall clock time and date at job start Fri Apr 10 2020 23:06:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.46687 * 2 1 4 4 C 1.52993 * 109.47243 * 120.00127 * 2 1 3 5 5 H 1.09003 * 109.47262 * 55.14326 * 4 2 1 6 6 N 1.46893 * 109.47575 * 175.14958 * 4 2 1 7 7 C 1.46904 * 111.00093 * 273.71053 * 6 4 2 8 8 C 1.52999 * 109.47088 * 175.06280 * 7 6 4 9 9 H 1.09003 * 109.47297 * 59.99902 * 8 7 6 10 10 O 1.42894 * 109.47211 * 299.99393 * 8 7 6 11 11 C 1.50708 * 109.46856 * 179.97438 * 8 7 6 12 12 H 1.08001 * 119.99577 * 0.02562 * 11 8 7 13 13 C 1.37873 * 119.99670 * 179.97438 * 11 8 7 14 14 N 1.31521 * 119.99721 * 180.02562 * 13 11 8 15 15 Si 1.86800 * 120.00268 * 0.02562 * 13 11 8 16 16 H 1.48497 * 109.47139 * 89.99789 * 15 13 11 17 17 H 1.48505 * 109.46751 * 209.99780 * 15 13 11 18 18 H 1.48501 * 109.46969 * 329.99811 * 15 13 11 19 19 C 1.50707 * 109.47260 * 295.14854 * 4 2 1 20 20 C 1.38227 * 120.00174 * 265.02210 * 19 4 2 21 21 C 1.38197 * 120.03641 * 179.97438 * 20 19 4 22 22 C 1.38385 * 120.04316 * 359.97438 * 21 20 19 23 23 Cl 1.73596 * 120.00149 * 179.97438 * 22 21 20 24 24 C 1.38293 * 119.99728 * 0.02562 * 22 21 20 25 25 C 1.38449 * 119.99783 * 84.99677 * 19 4 2 26 26 F 1.35103 * 120.02139 * 0.02562 * 25 19 4 27 27 H 1.09002 * 109.47275 * 299.99922 * 1 2 3 28 28 H 1.09001 * 109.46919 * 59.99932 * 1 2 3 29 29 H 1.09001 * 109.47234 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47275 * 240.00078 * 2 1 3 31 31 H 1.09007 * 109.46682 * 178.84434 * 3 2 1 32 32 H 1.08996 * 109.47277 * 298.84028 * 3 2 1 33 33 H 1.08999 * 109.46783 * 58.84842 * 3 2 1 34 34 H 1.00900 * 111.00682 * 149.74888 * 6 4 2 35 35 H 1.09002 * 109.46357 * 295.06076 * 7 6 4 36 36 H 1.08995 * 109.47387 * 55.05828 * 7 6 4 37 37 H 0.96694 * 114.00021 * 300.00537 * 10 8 7 38 38 H 0.96998 * 119.99811 * 180.02562 * 14 13 11 39 39 H 1.08002 * 119.97534 * 359.97438 * 20 19 4 40 40 H 1.08001 * 119.97749 * 180.27959 * 21 20 19 41 41 H 1.07996 * 120.01831 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.6074 -1.7207 1.2937 6 7 3.5043 -0.8235 1.1921 7 6 3.9199 -2.0182 0.4451 8 6 5.4431 -2.0256 0.3014 9 1 5.9014 -2.0377 1.2903 10 8 5.8607 -0.8544 -0.4029 11 6 5.8694 -3.2516 -0.4644 12 1 5.1280 -3.9548 -0.8139 13 6 7.2058 -3.4747 -0.7197 14 7 7.5779 -4.5444 -1.3884 15 14 8.4880 -2.2579 -0.1157 16 1 8.9381 -2.6475 1.2447 17 1 9.6492 -2.2622 -1.0414 18 1 7.8960 -0.8967 -0.0704 19 6 1.6382 0.0551 2.4768 20 6 2.5182 0.9592 3.0416 21 6 2.1503 1.6718 4.1670 22 6 0.9003 1.4817 4.7295 23 17 0.4395 2.3771 6.1436 24 6 0.0186 0.5777 4.1658 25 6 0.3874 -0.1368 3.0385 26 9 -0.4730 -1.0203 2.4868 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 3.1298 1.4426 0.0207 32 1 1.6936 1.9503 -0.9002 33 1 1.6597 1.9622 0.8795 34 1 3.9035 -0.8193 2.1187 35 1 3.6013 -2.9116 0.9823 36 1 3.4616 -2.0062 -0.5437 37 1 5.4904 -0.7777 -1.2928 38 1 8.5181 -4.7016 -1.5676 39 1 3.4938 1.1085 2.6031 40 1 2.8369 2.3812 4.6049 41 1 -0.9568 0.4288 4.6047 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000809577765.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:06:50 Heat of formation + Delta-G solvation = -80.849251 kcal Electronic energy + Delta-G solvation = -24646.361135 eV Core-core repulsion = 20887.353852 eV Total energy + Delta-G solvation = -3759.007283 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.114 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.18036 -39.96475 -37.71319 -36.63030 -35.85609 -33.15896 -32.23233 -31.19226 -30.77291 -28.37546 -27.05448 -25.69959 -23.90538 -22.76448 -22.43640 -20.54538 -19.35669 -17.99093 -17.29763 -16.76390 -16.37301 -16.28243 -15.47283 -14.95854 -14.74243 -14.64015 -14.37489 -14.08849 -13.88669 -13.68892 -13.48984 -13.34591 -12.98429 -12.72538 -12.45727 -12.05639 -11.89623 -11.73490 -11.55482 -11.46424 -11.36842 -11.24006 -10.97509 -10.79708 -10.77239 -10.47863 -10.32618 -9.92506 -9.22119 -9.05261 -8.81640 -8.62653 -8.27343 -7.99322 -6.13718 -4.25347 0.70406 0.83400 1.72119 3.16463 3.38753 3.48659 3.75475 3.97840 4.23238 4.43959 4.51286 4.53360 4.70858 4.89638 5.06806 5.12334 5.21531 5.27162 5.36168 5.50034 5.64390 5.71729 5.72575 5.80822 5.89346 5.90805 5.93584 5.98605 6.03028 6.10872 6.20428 6.26844 6.39933 6.50155 6.57065 6.62266 7.26028 7.31270 7.59293 7.72106 8.28500 8.82909 9.09639 9.51106 10.96972 Molecular weight = 315.11amu Principal moments of inertia in cm(-1) A = 0.017893 B = 0.003452 C = 0.003165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1564.471551 B = 8109.180900 C = 8843.624399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.077 4.077 3 C -0.139 4.139 4 C 0.128 3.872 5 H 0.055 0.945 6 N -0.673 5.673 7 C 0.043 3.957 8 C 0.202 3.798 9 H 0.050 0.950 10 O -0.570 6.570 11 C -0.566 4.566 12 H 0.070 0.930 13 C 0.083 3.917 14 N -0.894 5.894 15 Si 0.872 3.128 16 H -0.289 1.289 17 H -0.297 1.297 18 H -0.215 1.215 19 C -0.103 4.103 20 C -0.065 4.065 21 C -0.120 4.120 22 C -0.014 4.014 23 Cl -0.064 7.064 24 C -0.151 4.151 25 C 0.116 3.884 26 F -0.129 7.129 27 H 0.050 0.950 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.079 0.921 31 H 0.075 0.925 32 H 0.044 0.956 33 H 0.045 0.955 34 H 0.337 0.663 35 H 0.029 0.971 36 H 0.069 0.931 37 H 0.354 0.646 38 H 0.265 0.735 39 H 0.157 0.843 40 H 0.140 0.860 41 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.746 13.883 10.589 23.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.096 4.096 3 C -0.196 4.196 4 C 0.018 3.982 5 H 0.073 0.927 6 N -0.304 5.304 7 C -0.085 4.085 8 C 0.144 3.856 9 H 0.068 0.932 10 O -0.375 6.375 11 C -0.604 4.604 12 H 0.088 0.912 13 C -0.121 4.121 14 N -0.531 5.531 15 Si 0.699 3.301 16 H -0.216 1.216 17 H -0.224 1.224 18 H -0.137 1.137 19 C -0.104 4.104 20 C -0.083 4.083 21 C -0.139 4.139 22 C -0.041 4.041 23 Cl -0.036 7.036 24 C -0.170 4.170 25 C 0.096 3.904 26 F -0.107 7.107 27 H 0.069 0.931 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.097 0.903 31 H 0.094 0.906 32 H 0.063 0.937 33 H 0.064 0.936 34 H 0.156 0.844 35 H 0.047 0.953 36 H 0.087 0.913 37 H 0.200 0.800 38 H 0.074 0.926 39 H 0.174 0.826 40 H 0.158 0.842 41 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -15.299 14.350 10.636 23.518 hybrid contribution -0.130 -0.724 0.488 0.883 sum -15.429 13.626 11.124 23.398 Atomic orbital electron populations 1.22001 0.95683 1.01706 1.01451 1.21025 0.94325 0.97233 0.97018 1.21777 1.02910 0.94671 1.00290 1.20474 0.90297 0.96474 0.90913 0.92730 1.60639 1.05238 1.43143 1.21389 1.22733 0.99783 0.88409 0.97599 1.19653 0.87929 0.84739 0.93266 0.93207 1.86649 1.73399 1.46408 1.31063 1.21505 0.93784 1.07437 1.37668 0.91153 1.24999 0.98996 0.94833 0.93314 1.69964 1.17026 1.26917 1.39208 0.87007 0.79738 0.85631 0.77731 1.21579 1.22355 1.13691 1.20223 0.92889 0.99414 0.97890 1.21103 1.00421 0.93106 0.93655 1.21170 0.94902 1.01174 0.96644 1.20590 0.95260 0.96847 0.91370 1.98381 1.92448 1.73911 1.38813 1.20884 1.01346 0.98127 0.96661 1.17253 0.88282 0.91360 0.93539 1.91528 1.68782 1.65971 1.84442 0.93064 0.92707 0.92650 0.90270 0.90574 0.93691 0.93587 0.84443 0.95309 0.91291 0.79995 0.92593 0.82550 0.84212 0.83916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 7.83 37.16 0.29 -1.41 16 2 C -0.08 -0.95 2.83 -90.62 -0.26 -1.21 16 3 C -0.14 -1.64 8.41 37.16 0.31 -1.33 16 4 C 0.13 1.67 1.89 -68.87 -0.13 1.54 16 5 H 0.05 0.78 7.49 -51.93 -0.39 0.39 16 6 N -0.67 -9.89 4.87 -107.95 -0.53 -10.42 16 7 C 0.04 0.79 5.05 -3.82 -0.02 0.77 16 8 C 0.20 4.46 2.56 -27.88 -0.07 4.39 16 9 H 0.05 1.14 7.57 -51.93 -0.39 0.74 16 10 O -0.57 -12.28 10.01 -35.23 -0.35 -12.64 16 11 C -0.57 -15.29 9.34 -34.44 -0.32 -15.61 16 12 H 0.07 2.06 7.99 -52.49 -0.42 1.64 16 13 C 0.08 2.35 5.47 -17.82 -0.10 2.25 16 14 N -0.89 -27.05 13.96 55.43 0.77 -26.28 16 15 Si 0.87 21.45 26.99 -169.99 -4.59 16.86 16 16 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 17 H -0.30 -7.40 7.11 56.52 0.40 -6.99 16 18 H -0.21 -5.12 5.30 56.52 0.30 -4.82 16 19 C -0.10 -1.18 3.75 -104.54 -0.39 -1.58 16 20 C -0.06 -0.67 7.46 -39.60 -0.30 -0.97 16 21 C -0.12 -1.12 9.83 -39.54 -0.39 -1.51 16 22 C -0.01 -0.13 6.32 -39.51 -0.25 -0.38 16 23 Cl -0.06 -0.57 28.96 -51.86 -1.50 -2.07 16 24 C -0.15 -1.50 9.81 -39.48 -0.39 -1.89 16 25 C 0.12 1.31 5.85 -39.42 -0.23 1.08 16 26 F -0.13 -1.56 14.37 2.25 0.03 -1.52 16 27 H 0.05 0.58 5.62 -51.93 -0.29 0.28 16 28 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.05 0.63 7.87 -51.93 -0.41 0.22 16 30 H 0.08 1.08 7.39 -51.93 -0.38 0.70 16 31 H 0.08 1.00 7.72 -51.93 -0.40 0.60 16 32 H 0.04 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.05 0.52 6.44 -51.93 -0.33 0.18 16 34 H 0.34 4.79 7.24 -39.29 -0.28 4.50 16 35 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.07 1.27 7.37 -51.93 -0.38 0.89 16 37 H 0.35 6.95 9.04 45.56 0.41 7.36 16 38 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 39 H 0.16 1.63 6.95 -52.49 -0.36 1.26 16 40 H 0.14 1.06 8.06 -52.49 -0.42 0.64 16 41 H 0.14 1.21 8.06 -52.49 -0.42 0.79 16 LS Contribution 342.58 15.07 5.16 5.16 Total: -1.00 -29.33 342.58 -8.23 -37.56 By element: Atomic # 1 Polarization: 14.19 SS G_CDS: -4.99 Total: 9.20 kcal Atomic # 6 Polarization: -13.62 SS G_CDS: -2.24 Total: -15.86 kcal Atomic # 7 Polarization: -36.95 SS G_CDS: 0.25 Total: -36.70 kcal Atomic # 8 Polarization: -12.28 SS G_CDS: -0.35 Total: -12.64 kcal Atomic # 9 Polarization: -1.56 SS G_CDS: 0.03 Total: -1.52 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -4.59 Total: 16.86 kcal Atomic # 17 Polarization: -0.57 SS G_CDS: -1.50 Total: -2.07 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -29.33 -8.23 -37.56 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809577765.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.293 kcal (2) G-P(sol) polarization free energy of solvation -29.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds