Wall clock time and date at job start Fri Apr 10 2020 23:06:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.46687 * 2 1 4 4 C 1.52993 * 109.47243 * 120.00127 * 2 1 3 5 5 H 1.09003 * 109.47262 * 55.14326 * 4 2 1 6 6 N 1.46893 * 109.47575 * 175.14958 * 4 2 1 7 7 C 1.46904 * 111.00093 * 273.71053 * 6 4 2 8 8 C 1.52999 * 109.47088 * 175.06280 * 7 6 4 9 9 H 1.09003 * 109.47297 * 59.99902 * 8 7 6 10 10 O 1.42894 * 109.47211 * 299.99393 * 8 7 6 11 11 C 1.50708 * 109.46856 * 179.97438 * 8 7 6 12 12 H 1.08001 * 119.99577 * 0.02562 * 11 8 7 13 13 C 1.37873 * 119.99670 * 179.97438 * 11 8 7 14 14 N 1.31521 * 119.99721 * 180.02562 * 13 11 8 15 15 Si 1.86800 * 120.00268 * 0.02562 * 13 11 8 16 16 H 1.48497 * 109.47139 * 89.99789 * 15 13 11 17 17 H 1.48505 * 109.46751 * 209.99780 * 15 13 11 18 18 H 1.48501 * 109.46969 * 329.99811 * 15 13 11 19 19 C 1.50707 * 109.47260 * 295.14854 * 4 2 1 20 20 C 1.38227 * 120.00174 * 265.02210 * 19 4 2 21 21 C 1.38197 * 120.03641 * 179.97438 * 20 19 4 22 22 C 1.38385 * 120.04316 * 359.97438 * 21 20 19 23 23 Cl 1.73596 * 120.00149 * 179.97438 * 22 21 20 24 24 C 1.38293 * 119.99728 * 0.02562 * 22 21 20 25 25 C 1.38449 * 119.99783 * 84.99677 * 19 4 2 26 26 F 1.35103 * 120.02139 * 0.02562 * 25 19 4 27 27 H 1.09002 * 109.47275 * 299.99922 * 1 2 3 28 28 H 1.09001 * 109.46919 * 59.99932 * 1 2 3 29 29 H 1.09001 * 109.47234 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47275 * 240.00078 * 2 1 3 31 31 H 1.09007 * 109.46682 * 178.84434 * 3 2 1 32 32 H 1.08996 * 109.47277 * 298.84028 * 3 2 1 33 33 H 1.08999 * 109.46783 * 58.84842 * 3 2 1 34 34 H 1.00900 * 111.00682 * 149.74888 * 6 4 2 35 35 H 1.09002 * 109.46357 * 295.06076 * 7 6 4 36 36 H 1.08995 * 109.47387 * 55.05828 * 7 6 4 37 37 H 0.96694 * 114.00021 * 300.00537 * 10 8 7 38 38 H 0.96998 * 119.99811 * 180.02562 * 14 13 11 39 39 H 1.08002 * 119.97534 * 359.97438 * 20 19 4 40 40 H 1.08001 * 119.97749 * 180.27959 * 21 20 19 41 41 H 1.07996 * 120.01831 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.6074 -1.7207 1.2937 6 7 3.5043 -0.8235 1.1921 7 6 3.9199 -2.0182 0.4451 8 6 5.4431 -2.0256 0.3014 9 1 5.9014 -2.0377 1.2903 10 8 5.8607 -0.8544 -0.4029 11 6 5.8694 -3.2516 -0.4644 12 1 5.1280 -3.9548 -0.8139 13 6 7.2058 -3.4747 -0.7197 14 7 7.5779 -4.5444 -1.3884 15 14 8.4880 -2.2579 -0.1157 16 1 8.9381 -2.6475 1.2447 17 1 9.6492 -2.2622 -1.0414 18 1 7.8960 -0.8967 -0.0704 19 6 1.6382 0.0551 2.4768 20 6 2.5182 0.9592 3.0416 21 6 2.1503 1.6718 4.1670 22 6 0.9003 1.4817 4.7295 23 17 0.4395 2.3771 6.1436 24 6 0.0186 0.5777 4.1658 25 6 0.3874 -0.1368 3.0385 26 9 -0.4730 -1.0203 2.4868 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 3.1298 1.4426 0.0207 32 1 1.6936 1.9503 -0.9002 33 1 1.6597 1.9622 0.8795 34 1 3.9035 -0.8193 2.1187 35 1 3.6013 -2.9116 0.9823 36 1 3.4616 -2.0062 -0.5437 37 1 5.4904 -0.7777 -1.2928 38 1 8.5181 -4.7016 -1.5676 39 1 3.4938 1.1085 2.6031 40 1 2.8369 2.3812 4.6049 41 1 -0.9568 0.4288 4.6047 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000809577765.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:06:50 Heat of formation + Delta-G solvation = -99.329771 kcal Electronic energy + Delta-G solvation = -24647.162510 eV Core-core repulsion = 20887.353852 eV Total energy + Delta-G solvation = -3759.808658 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.114 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -50.06259 -40.86088 -38.81423 -37.78288 -37.04182 -34.46653 -34.31578 -32.10957 -31.61726 -30.03663 -27.98601 -27.10947 -25.23063 -23.74128 -23.34565 -22.23239 -20.36848 -19.25683 -18.83284 -17.70752 -17.44586 -17.21948 -16.79022 -16.42920 -16.24553 -15.75542 -15.55817 -15.23378 -15.17732 -14.86502 -14.70900 -14.30333 -14.24369 -14.10227 -13.55670 -13.30816 -13.09874 -12.91524 -12.88007 -12.60828 -12.52366 -12.38182 -12.31902 -12.02206 -11.85467 -11.76493 -11.66570 -11.41994 -11.03929 -10.77895 -10.08667 -9.99997 -9.62082 -9.30515 -8.32951 -6.47962 -0.10750 0.04876 0.98341 1.43553 1.49501 1.79914 2.36561 2.47076 3.02346 3.06861 3.22497 3.48780 3.69974 3.94671 3.98833 4.07388 4.17273 4.21992 4.34745 4.38677 4.48404 4.51723 4.60567 4.80164 4.83663 4.87581 4.95281 5.02839 5.05225 5.11215 5.13021 5.23857 5.27432 5.45324 5.48927 5.52874 5.61972 5.66703 6.07394 6.11378 6.45290 6.66157 7.25719 7.41671 8.81469 Molecular weight = 315.11amu Principal moments of inertia in cm(-1) A = 0.017893 B = 0.003452 C = 0.003165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1564.471551 B = 8109.180900 C = 8843.624399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.077 4.077 3 C -0.131 4.131 4 C 0.133 3.867 5 H 0.039 0.961 6 N -0.663 5.663 7 C 0.060 3.940 8 C 0.211 3.789 9 H 0.051 0.949 10 O -0.569 6.569 11 C -0.567 4.567 12 H 0.032 0.968 13 C 0.025 3.975 14 N -0.944 5.944 15 Si 0.942 3.058 16 H -0.286 1.286 17 H -0.301 1.301 18 H -0.198 1.198 19 C -0.111 4.111 20 C -0.065 4.065 21 C -0.113 4.113 22 C -0.015 4.015 23 Cl -0.055 7.055 24 C -0.148 4.148 25 C 0.104 3.896 26 F -0.137 7.137 27 H 0.052 0.948 28 H 0.065 0.935 29 H 0.048 0.952 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.052 0.948 33 H 0.052 0.948 34 H 0.343 0.657 35 H 0.018 0.982 36 H 0.064 0.936 37 H 0.365 0.635 38 H 0.266 0.734 39 H 0.158 0.842 40 H 0.161 0.839 41 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.142 16.459 12.132 26.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.096 4.096 3 C -0.188 4.188 4 C 0.023 3.977 5 H 0.057 0.943 6 N -0.294 5.294 7 C -0.070 4.070 8 C 0.153 3.847 9 H 0.069 0.931 10 O -0.375 6.375 11 C -0.605 4.605 12 H 0.051 0.949 13 C -0.174 4.174 14 N -0.583 5.583 15 Si 0.766 3.234 16 H -0.213 1.213 17 H -0.229 1.229 18 H -0.120 1.120 19 C -0.112 4.112 20 C -0.083 4.083 21 C -0.131 4.131 22 C -0.042 4.042 23 Cl -0.026 7.026 24 C -0.167 4.167 25 C 0.084 3.916 26 F -0.116 7.116 27 H 0.071 0.929 28 H 0.084 0.916 29 H 0.067 0.933 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.162 0.838 35 H 0.037 0.963 36 H 0.082 0.918 37 H 0.212 0.788 38 H 0.075 0.925 39 H 0.176 0.824 40 H 0.178 0.822 41 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -15.722 16.943 12.188 26.130 hybrid contribution -0.106 -1.537 0.028 1.541 sum -15.828 15.406 12.216 25.241 Atomic orbital electron populations 1.21934 0.94702 1.01524 1.02046 1.21015 0.95137 0.97506 0.95974 1.21687 1.01972 0.94130 1.01004 1.20388 0.88731 0.96217 0.92341 0.94277 1.60544 1.06634 1.40764 1.21503 1.22340 0.97160 0.89536 0.97926 1.19427 0.90278 0.82754 0.92274 0.93116 1.86578 1.73702 1.45335 1.31840 1.21878 0.92967 1.08464 1.37191 0.94938 1.25907 1.01391 0.96500 0.93579 1.70101 1.17518 1.29225 1.41455 0.85943 0.76721 0.83842 0.76846 1.21298 1.22866 1.11998 1.20070 0.93499 1.00071 0.97596 1.21112 1.00205 0.93002 0.94018 1.21377 0.95035 1.00811 0.95895 1.20689 0.95302 0.96647 0.91570 1.98390 1.92389 1.73588 1.38198 1.21030 1.02039 0.97642 0.96033 1.17360 0.88227 0.91820 0.94206 1.91508 1.69020 1.66371 1.84679 0.92852 0.91642 0.93267 0.91834 0.91802 0.92929 0.92900 0.83808 0.96329 0.91789 0.78831 0.92548 0.82409 0.82159 0.82572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.09 7.83 71.98 0.56 -2.53 16 2 C -0.08 -1.84 2.83 -10.79 -0.03 -1.87 16 3 C -0.13 -2.85 8.41 71.98 0.61 -2.25 16 4 C 0.13 3.36 1.89 44.17 0.08 3.44 16 5 H 0.04 1.12 7.49 -2.39 -0.02 1.10 16 6 N -0.66 -18.77 4.87 -495.46 -2.41 -21.18 16 7 C 0.06 2.16 5.05 86.30 0.44 2.60 16 8 C 0.21 9.14 2.56 29.85 0.08 9.21 16 9 H 0.05 2.23 7.57 -2.39 -0.02 2.21 16 10 O -0.57 -23.35 10.01 -148.98 -1.49 -24.84 16 11 C -0.57 -31.09 9.34 25.60 0.24 -30.85 16 12 H 0.03 1.98 7.99 -2.91 -0.02 1.96 16 13 C 0.03 1.45 5.47 84.65 0.46 1.92 16 14 N -0.94 -58.43 13.96 21.45 0.30 -58.13 16 15 Si 0.94 44.25 26.99 68.60 1.85 46.10 16 16 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 17 H -0.30 -14.31 7.11 99.48 0.71 -13.61 16 18 H -0.20 -8.73 5.30 99.48 0.53 -8.20 16 19 C -0.11 -2.39 3.75 -19.81 -0.07 -2.47 16 20 C -0.07 -1.20 7.46 22.26 0.17 -1.04 16 21 C -0.11 -1.78 9.83 22.29 0.22 -1.56 16 22 C -0.02 -0.25 6.32 22.32 0.14 -0.11 16 23 Cl -0.05 -0.82 28.96 -2.72 -0.08 -0.90 16 24 C -0.15 -2.64 9.81 22.34 0.22 -2.42 16 25 C 0.10 2.20 5.85 22.37 0.13 2.33 16 26 F -0.14 -3.21 14.37 44.97 0.65 -2.56 16 27 H 0.05 1.12 5.62 -2.39 -0.01 1.11 16 28 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.05 1.10 7.87 -2.39 -0.02 1.08 16 30 H 0.06 1.71 7.39 -2.39 -0.02 1.69 16 31 H 0.06 1.56 7.72 -2.38 -0.02 1.54 16 32 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.05 1.08 6.44 -2.39 -0.02 1.06 16 34 H 0.34 9.17 7.24 -89.69 -0.65 8.52 16 35 H 0.02 0.70 8.14 -2.39 -0.02 0.69 16 36 H 0.06 2.37 7.37 -2.39 -0.02 2.35 16 37 H 0.36 13.68 9.04 -74.06 -0.67 13.01 16 38 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 39 H 0.16 2.89 6.95 -2.91 -0.02 2.87 16 40 H 0.16 1.86 8.06 -2.91 -0.02 1.83 16 41 H 0.16 2.30 8.06 -2.91 -0.02 2.27 16 Total: -1.00 -62.80 342.58 1.62 -61.18 By element: Atomic # 1 Polarization: 26.37 SS G_CDS: -0.43 Total: 25.94 kcal Atomic # 6 Polarization: -28.84 SS G_CDS: 3.24 Total: -25.60 kcal Atomic # 7 Polarization: -77.20 SS G_CDS: -2.11 Total: -79.31 kcal Atomic # 8 Polarization: -23.35 SS G_CDS: -1.49 Total: -24.84 kcal Atomic # 9 Polarization: -3.21 SS G_CDS: 0.65 Total: -2.56 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 1.85 Total: 46.10 kcal Atomic # 17 Polarization: -0.82 SS G_CDS: -0.08 Total: -0.90 kcal Total: -62.80 1.62 -61.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809577765.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.149 kcal (2) G-P(sol) polarization free energy of solvation -62.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds