Wall clock time and date at job start Fri Apr 10 2020 23:06:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47298 * 2 1 4 4 C 1.53001 * 109.47092 * 240.00519 * 2 1 3 5 5 H 1.08999 * 109.46906 * 305.75595 * 4 2 1 6 6 N 1.46904 * 109.47243 * 185.75343 * 4 2 1 7 7 C 1.46897 * 110.99942 * 88.27177 * 6 4 2 8 8 C 1.52999 * 109.47048 * 174.91829 * 7 6 4 9 9 H 1.08993 * 109.47117 * 60.00374 * 8 7 6 10 10 O 1.42894 * 109.47181 * 299.99940 * 8 7 6 11 11 C 1.50703 * 109.46760 * 180.02562 * 8 7 6 12 12 H 1.07994 * 120.00324 * 0.02562 * 11 8 7 13 13 C 1.37883 * 119.99506 * 180.02562 * 11 8 7 14 14 N 1.31519 * 119.99680 * 179.97438 * 13 11 8 15 15 Si 1.86795 * 119.99966 * 0.02562 * 13 11 8 16 16 H 1.48501 * 109.47343 * 90.00241 * 15 13 11 17 17 H 1.48510 * 109.46779 * 209.99735 * 15 13 11 18 18 H 1.48493 * 109.47558 * 329.99716 * 15 13 11 19 19 C 1.50703 * 109.47095 * 65.75294 * 4 2 1 20 20 C 1.38228 * 119.99665 * 100.00052 * 19 4 2 21 21 C 1.38203 * 120.03438 * 180.02562 * 20 19 4 22 22 C 1.38386 * 120.04092 * 359.97438 * 21 20 19 23 23 Cl 1.73598 * 120.00269 * 179.97438 * 22 21 20 24 24 C 1.38289 * 119.99661 * 359.97438 * 22 21 20 25 25 C 1.38439 * 120.00034 * 279.72897 * 19 4 2 26 26 F 1.35103 * 120.01845 * 359.97438 * 25 19 4 27 27 H 1.08999 * 109.47374 * 52.61362 * 1 2 3 28 28 H 1.08998 * 109.46987 * 172.61806 * 1 2 3 29 29 H 1.09007 * 109.46884 * 292.61799 * 1 2 3 30 30 H 1.09000 * 109.47441 * 120.00374 * 2 1 3 31 31 H 1.09003 * 109.46509 * 60.00466 * 3 2 1 32 32 H 1.08990 * 109.47638 * 180.02562 * 3 2 1 33 33 H 1.09000 * 109.47637 * 300.00808 * 3 2 1 34 34 H 1.00898 * 110.99649 * 324.31735 * 6 4 2 35 35 H 1.08999 * 109.47284 * 294.92442 * 7 6 4 36 36 H 1.09007 * 109.46875 * 54.91755 * 7 6 4 37 37 H 0.96704 * 114.00324 * 299.99834 * 10 8 7 38 38 H 0.96992 * 119.99794 * 179.97438 * 14 13 11 39 39 H 1.07996 * 119.98734 * 0.02562 * 20 19 4 40 40 H 1.07999 * 119.98209 * 179.97438 * 21 20 19 41 41 H 1.08009 * 120.01914 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 -1.2493 5 1 1.5949 -1.7147 -1.3024 6 7 3.5024 -0.8426 -1.1820 7 6 3.8969 -2.0707 -0.4792 8 6 5.4177 -2.2267 -0.5393 9 1 5.8901 -1.3678 -0.0628 10 8 5.8350 -2.3038 -1.9038 11 6 5.8222 -3.4870 0.1811 12 1 5.0699 -4.1142 0.6360 13 6 7.1530 -3.8393 0.2595 14 7 7.5061 -4.9389 0.8887 15 14 8.4543 -2.7541 -0.5267 16 1 8.9197 -1.7458 0.4592 17 1 9.6026 -3.5914 -0.9579 18 1 7.8755 -2.0625 -1.7064 19 6 1.6573 0.0669 -2.4756 20 6 2.5874 0.8843 -3.0899 21 6 2.2372 1.6077 -4.2142 22 6 0.9551 1.5141 -4.7266 23 17 0.5160 2.4237 -6.1385 24 6 0.0237 0.6960 -4.1138 25 6 0.3759 -0.0323 -2.9901 26 9 -0.5317 -0.8358 -2.3935 27 1 -0.3634 0.6240 -0.8165 28 1 -0.3633 -1.0191 -0.1320 29 1 -0.3633 0.3953 0.9487 30 1 1.8934 -0.5139 0.8899 31 1 1.6767 1.9563 0.8901 32 1 3.1299 1.4426 -0.0005 33 1 1.6767 1.9565 -0.8899 34 1 3.9131 -0.0297 -0.7477 35 1 3.5785 -2.0120 0.5616 36 1 3.4243 -2.9297 -0.9557 37 1 5.4525 -3.0466 -2.3908 38 1 8.4422 -5.1870 0.9435 39 1 3.5884 0.9577 -2.6911 40 1 2.9645 2.2464 -4.6932 41 1 -0.9772 0.6230 -4.5132 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000809577766.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:06:52 Heat of formation + Delta-G solvation = -79.400691 kcal Electronic energy + Delta-G solvation = -24652.644736 eV Core-core repulsion = 20893.700268 eV Total energy + Delta-G solvation = -3758.944469 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.114 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.11740 -39.87805 -37.82281 -36.58524 -35.92469 -32.98192 -32.23673 -31.13535 -30.69804 -28.39711 -27.34995 -25.67784 -23.82110 -22.71865 -22.31552 -20.57834 -19.66599 -17.91862 -17.30836 -16.72645 -16.53677 -16.02011 -15.35284 -15.08570 -14.75285 -14.45184 -14.36746 -14.16250 -13.90046 -13.67565 -13.49724 -13.41251 -12.81670 -12.67800 -12.58841 -12.11315 -11.99695 -11.70048 -11.59400 -11.44445 -11.40054 -11.21373 -10.98133 -10.94069 -10.81085 -10.70955 -10.35934 -9.93292 -9.09763 -9.06259 -8.69163 -8.63055 -8.31826 -7.96896 -6.14280 -4.25933 0.84065 0.96847 1.81790 3.29816 3.38134 3.48255 3.75270 4.08177 4.25693 4.52811 4.57091 4.65103 4.77373 4.82422 4.91741 5.06271 5.10147 5.21392 5.40347 5.48434 5.54282 5.57492 5.74121 5.78617 5.83808 5.85233 5.91540 5.95265 6.00979 6.03488 6.15625 6.17356 6.25190 6.30724 6.59159 6.60505 7.24869 7.30429 7.58494 7.71540 8.27983 8.82284 9.09303 9.50539 10.96401 Molecular weight = 315.11amu Principal moments of inertia in cm(-1) A = 0.016850 B = 0.003572 C = 0.003192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1661.332385 B = 7837.545854 C = 8770.985070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.122 4.122 3 C -0.149 4.149 4 C 0.127 3.873 5 H 0.090 0.910 6 N -0.675 5.675 7 C 0.044 3.956 8 C 0.201 3.799 9 H 0.050 0.950 10 O -0.571 6.571 11 C -0.566 4.566 12 H 0.071 0.929 13 C 0.083 3.917 14 N -0.894 5.894 15 Si 0.872 3.128 16 H -0.289 1.289 17 H -0.296 1.296 18 H -0.215 1.215 19 C -0.083 4.083 20 C -0.051 4.051 21 C -0.123 4.123 22 C -0.016 4.016 23 Cl -0.068 7.068 24 C -0.152 4.152 25 C 0.110 3.890 26 F -0.131 7.131 27 H 0.055 0.945 28 H 0.060 0.940 29 H 0.051 0.949 30 H 0.078 0.922 31 H 0.055 0.945 32 H 0.058 0.942 33 H 0.057 0.943 34 H 0.338 0.662 35 H 0.031 0.969 36 H 0.067 0.933 37 H 0.355 0.645 38 H 0.265 0.735 39 H 0.152 0.848 40 H 0.138 0.862 41 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.548 15.108 -8.459 23.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.142 4.142 3 C -0.206 4.206 4 C 0.016 3.984 5 H 0.108 0.892 6 N -0.305 5.305 7 C -0.084 4.084 8 C 0.143 3.857 9 H 0.068 0.932 10 O -0.376 6.376 11 C -0.604 4.604 12 H 0.089 0.911 13 C -0.121 4.121 14 N -0.531 5.531 15 Si 0.699 3.301 16 H -0.216 1.216 17 H -0.223 1.223 18 H -0.137 1.137 19 C -0.085 4.085 20 C -0.069 4.069 21 C -0.142 4.142 22 C -0.043 4.043 23 Cl -0.039 7.039 24 C -0.172 4.172 25 C 0.090 3.910 26 F -0.109 7.109 27 H 0.074 0.926 28 H 0.079 0.921 29 H 0.070 0.930 30 H 0.097 0.903 31 H 0.074 0.926 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.158 0.842 35 H 0.049 0.951 36 H 0.086 0.914 37 H 0.201 0.799 38 H 0.074 0.926 39 H 0.169 0.831 40 H 0.155 0.845 41 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -15.077 15.291 -8.967 23.271 hybrid contribution -0.078 -0.056 0.613 0.620 sum -15.155 15.235 -8.354 23.055 Atomic orbital electron populations 1.22001 0.94742 1.02217 1.01447 1.21785 0.96719 0.97080 0.98582 1.21891 1.01141 0.95697 1.01914 1.20481 0.90312 0.97781 0.89846 0.89226 1.60609 1.05322 1.06153 1.58413 1.22720 0.99948 0.90453 0.95323 1.19663 0.88007 0.96847 0.81155 0.93198 1.86647 1.72512 1.53225 1.25222 1.21500 0.93945 1.08012 1.36945 0.91131 1.25000 0.99057 0.94707 0.93374 1.69960 1.17657 1.23919 1.41549 0.87008 0.79841 0.80941 0.82329 1.21558 1.22327 1.13737 1.20038 0.91611 0.98681 0.98180 1.20985 0.99987 0.92673 0.93276 1.21171 0.94595 1.01199 0.97232 1.20557 0.94839 0.97592 0.91295 1.98374 1.93164 1.73150 1.39238 1.20838 1.00891 0.98971 0.96497 1.17238 0.87048 0.93333 0.93335 1.91513 1.65984 1.71022 1.82408 0.92648 0.92102 0.93015 0.90332 0.92594 0.92315 0.92382 0.84231 0.95123 0.91418 0.79924 0.92583 0.83076 0.84462 0.84106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 7.57 37.16 0.28 -1.27 16 2 C -0.12 -1.38 2.79 -90.62 -0.25 -1.64 16 3 C -0.15 -1.52 8.45 37.16 0.31 -1.21 16 4 C 0.13 1.62 1.92 -68.86 -0.13 1.49 16 5 H 0.09 1.26 7.45 -51.93 -0.39 0.87 16 6 N -0.67 -9.91 4.86 -107.95 -0.52 -10.43 16 7 C 0.04 0.80 5.13 -3.83 -0.02 0.78 16 8 C 0.20 4.45 2.56 -27.88 -0.07 4.37 16 9 H 0.05 1.13 7.57 -51.93 -0.39 0.74 16 10 O -0.57 -12.49 10.01 -35.23 -0.35 -12.85 16 11 C -0.57 -15.28 9.34 -34.44 -0.32 -15.60 16 12 H 0.07 2.06 7.99 -52.49 -0.42 1.64 16 13 C 0.08 2.35 5.47 -17.82 -0.10 2.25 16 14 N -0.89 -27.02 13.96 55.43 0.77 -26.25 16 15 Si 0.87 21.47 26.99 -169.99 -4.59 16.88 16 16 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 17 H -0.30 -7.40 7.11 56.52 0.40 -7.00 16 18 H -0.22 -5.16 5.31 56.52 0.30 -4.86 16 19 C -0.08 -0.99 3.81 -104.55 -0.40 -1.39 16 20 C -0.05 -0.57 8.35 -39.60 -0.33 -0.90 16 21 C -0.12 -1.25 9.83 -39.54 -0.39 -1.64 16 22 C -0.02 -0.17 6.32 -39.51 -0.25 -0.41 16 23 Cl -0.07 -0.64 28.96 -51.86 -1.50 -2.14 16 24 C -0.15 -1.60 9.81 -39.48 -0.39 -1.98 16 25 C 0.11 1.28 5.93 -39.42 -0.23 1.05 16 26 F -0.13 -1.57 13.62 2.25 0.03 -1.54 16 27 H 0.05 0.59 5.89 -51.93 -0.31 0.29 16 28 H 0.06 0.67 7.35 -51.93 -0.38 0.29 16 29 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.08 0.97 7.67 -51.93 -0.40 0.57 16 31 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.06 0.60 6.45 -51.93 -0.34 0.26 16 33 H 0.06 0.58 6.57 -51.93 -0.34 0.24 16 34 H 0.34 4.69 6.31 -39.29 -0.25 4.44 16 35 H 0.03 0.56 7.69 -51.93 -0.40 0.16 16 36 H 0.07 1.26 7.93 -51.93 -0.41 0.85 16 37 H 0.35 7.12 9.04 45.56 0.41 7.53 16 38 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 39 H 0.15 1.71 6.93 -52.49 -0.36 1.35 16 40 H 0.14 1.17 8.06 -52.49 -0.42 0.74 16 41 H 0.14 1.26 8.06 -52.48 -0.42 0.83 16 LS Contribution 340.72 15.07 5.13 5.13 Total: -1.00 -29.45 340.72 -8.22 -37.66 By element: Atomic # 1 Polarization: 14.54 SS G_CDS: -4.90 Total: 9.64 kcal Atomic # 6 Polarization: -13.82 SS G_CDS: -2.29 Total: -16.10 kcal Atomic # 7 Polarization: -36.93 SS G_CDS: 0.25 Total: -36.68 kcal Atomic # 8 Polarization: -12.49 SS G_CDS: -0.35 Total: -12.85 kcal Atomic # 9 Polarization: -1.57 SS G_CDS: 0.03 Total: -1.54 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -4.59 Total: 16.88 kcal Atomic # 17 Polarization: -0.64 SS G_CDS: -1.50 Total: -2.14 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -29.45 -8.22 -37.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809577766.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.740 kcal (2) G-P(sol) polarization free energy of solvation -29.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds