Wall clock time and date at job start Fri Apr 10 2020 23:06:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47298 * 2 1 4 4 C 1.53001 * 109.47092 * 240.00519 * 2 1 3 5 5 H 1.08999 * 109.46906 * 305.75595 * 4 2 1 6 6 N 1.46904 * 109.47243 * 185.75343 * 4 2 1 7 7 C 1.46897 * 110.99942 * 88.27177 * 6 4 2 8 8 C 1.52999 * 109.47048 * 174.91829 * 7 6 4 9 9 H 1.08993 * 109.47117 * 60.00374 * 8 7 6 10 10 O 1.42894 * 109.47181 * 299.99940 * 8 7 6 11 11 C 1.50703 * 109.46760 * 180.02562 * 8 7 6 12 12 H 1.07994 * 120.00324 * 0.02562 * 11 8 7 13 13 C 1.37883 * 119.99506 * 180.02562 * 11 8 7 14 14 N 1.31519 * 119.99680 * 179.97438 * 13 11 8 15 15 Si 1.86795 * 119.99966 * 0.02562 * 13 11 8 16 16 H 1.48501 * 109.47343 * 90.00241 * 15 13 11 17 17 H 1.48510 * 109.46779 * 209.99735 * 15 13 11 18 18 H 1.48493 * 109.47558 * 329.99716 * 15 13 11 19 19 C 1.50703 * 109.47095 * 65.75294 * 4 2 1 20 20 C 1.38228 * 119.99665 * 100.00052 * 19 4 2 21 21 C 1.38203 * 120.03438 * 180.02562 * 20 19 4 22 22 C 1.38386 * 120.04092 * 359.97438 * 21 20 19 23 23 Cl 1.73598 * 120.00269 * 179.97438 * 22 21 20 24 24 C 1.38289 * 119.99661 * 359.97438 * 22 21 20 25 25 C 1.38439 * 120.00034 * 279.72897 * 19 4 2 26 26 F 1.35103 * 120.01845 * 359.97438 * 25 19 4 27 27 H 1.08999 * 109.47374 * 52.61362 * 1 2 3 28 28 H 1.08998 * 109.46987 * 172.61806 * 1 2 3 29 29 H 1.09007 * 109.46884 * 292.61799 * 1 2 3 30 30 H 1.09000 * 109.47441 * 120.00374 * 2 1 3 31 31 H 1.09003 * 109.46509 * 60.00466 * 3 2 1 32 32 H 1.08990 * 109.47638 * 180.02562 * 3 2 1 33 33 H 1.09000 * 109.47637 * 300.00808 * 3 2 1 34 34 H 1.00898 * 110.99649 * 324.31735 * 6 4 2 35 35 H 1.08999 * 109.47284 * 294.92442 * 7 6 4 36 36 H 1.09007 * 109.46875 * 54.91755 * 7 6 4 37 37 H 0.96704 * 114.00324 * 299.99834 * 10 8 7 38 38 H 0.96992 * 119.99794 * 179.97438 * 14 13 11 39 39 H 1.07996 * 119.98734 * 0.02562 * 20 19 4 40 40 H 1.07999 * 119.98209 * 179.97438 * 21 20 19 41 41 H 1.08009 * 120.01914 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 -1.2493 5 1 1.5949 -1.7147 -1.3024 6 7 3.5024 -0.8426 -1.1820 7 6 3.8969 -2.0707 -0.4792 8 6 5.4177 -2.2267 -0.5393 9 1 5.8901 -1.3678 -0.0628 10 8 5.8350 -2.3038 -1.9038 11 6 5.8222 -3.4870 0.1811 12 1 5.0699 -4.1142 0.6360 13 6 7.1530 -3.8393 0.2595 14 7 7.5061 -4.9389 0.8887 15 14 8.4543 -2.7541 -0.5267 16 1 8.9197 -1.7458 0.4592 17 1 9.6026 -3.5914 -0.9579 18 1 7.8755 -2.0625 -1.7064 19 6 1.6573 0.0669 -2.4756 20 6 2.5874 0.8843 -3.0899 21 6 2.2372 1.6077 -4.2142 22 6 0.9551 1.5141 -4.7266 23 17 0.5160 2.4237 -6.1385 24 6 0.0237 0.6960 -4.1138 25 6 0.3759 -0.0323 -2.9901 26 9 -0.5317 -0.8358 -2.3935 27 1 -0.3634 0.6240 -0.8165 28 1 -0.3633 -1.0191 -0.1320 29 1 -0.3633 0.3953 0.9487 30 1 1.8934 -0.5139 0.8899 31 1 1.6767 1.9563 0.8901 32 1 3.1299 1.4426 -0.0005 33 1 1.6767 1.9565 -0.8899 34 1 3.9131 -0.0297 -0.7477 35 1 3.5785 -2.0120 0.5616 36 1 3.4243 -2.9297 -0.9557 37 1 5.4525 -3.0466 -2.3908 38 1 8.4422 -5.1870 0.9435 39 1 3.5884 0.9577 -2.6911 40 1 2.9645 2.2464 -4.6932 41 1 -0.9772 0.6230 -4.5132 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000809577766.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:06:51 Heat of formation + Delta-G solvation = -97.861872 kcal Electronic energy + Delta-G solvation = -24653.445273 eV Core-core repulsion = 20893.700268 eV Total energy + Delta-G solvation = -3759.745005 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.114 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -50.01497 -40.80053 -38.90077 -37.78849 -37.10589 -34.40840 -34.17781 -32.06884 -31.54921 -30.06429 -28.19452 -27.09025 -25.15669 -23.68959 -23.21158 -22.29073 -20.62061 -19.30805 -18.77438 -17.66511 -17.59268 -16.93318 -16.82768 -16.38323 -16.19171 -15.78207 -15.48445 -15.46713 -14.97978 -14.88567 -14.60983 -14.48537 -14.21255 -13.86682 -13.54893 -13.37596 -13.23003 -12.91125 -12.89486 -12.63141 -12.50417 -12.39369 -12.31124 -12.02034 -11.96379 -11.76116 -11.71466 -11.52520 -11.05604 -10.77931 -10.09844 -9.92150 -9.56504 -9.24333 -8.33164 -6.48041 -0.00786 0.13807 1.03468 1.42920 1.49140 1.79516 2.45293 2.46789 3.04591 3.07953 3.28782 3.65375 3.77016 3.84629 3.97383 4.03434 4.12224 4.19662 4.25694 4.36950 4.50370 4.57931 4.61790 4.69650 4.76185 4.90456 4.94054 4.98555 5.02383 5.04697 5.16832 5.20337 5.31474 5.34036 5.38627 5.50793 5.53881 5.75103 6.08522 6.11245 6.47707 6.66298 7.25050 7.40414 8.81213 Molecular weight = 315.11amu Principal moments of inertia in cm(-1) A = 0.016850 B = 0.003572 C = 0.003192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1661.332385 B = 7837.545854 C = 8770.985070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.119 4.119 3 C -0.145 4.145 4 C 0.131 3.869 5 H 0.073 0.927 6 N -0.669 5.669 7 C 0.061 3.939 8 C 0.209 3.791 9 H 0.053 0.947 10 O -0.571 6.571 11 C -0.566 4.566 12 H 0.033 0.967 13 C 0.026 3.974 14 N -0.943 5.943 15 Si 0.942 3.058 16 H -0.285 1.285 17 H -0.302 1.302 18 H -0.201 1.201 19 C -0.091 4.091 20 C -0.055 4.055 21 C -0.118 4.118 22 C -0.018 4.018 23 Cl -0.058 7.058 24 C -0.150 4.150 25 C 0.100 3.900 26 F -0.137 7.137 27 H 0.056 0.944 28 H 0.052 0.948 29 H 0.061 0.939 30 H 0.067 0.933 31 H 0.064 0.936 32 H 0.058 0.942 33 H 0.060 0.940 34 H 0.345 0.655 35 H 0.026 0.974 36 H 0.059 0.941 37 H 0.364 0.636 38 H 0.266 0.734 39 H 0.152 0.848 40 H 0.156 0.844 41 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.894 17.525 -9.923 25.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.139 4.139 3 C -0.202 4.202 4 C 0.021 3.979 5 H 0.091 0.909 6 N -0.300 5.300 7 C -0.069 4.069 8 C 0.151 3.849 9 H 0.071 0.929 10 O -0.377 6.377 11 C -0.604 4.604 12 H 0.052 0.948 13 C -0.174 4.174 14 N -0.583 5.583 15 Si 0.766 3.234 16 H -0.211 1.211 17 H -0.229 1.229 18 H -0.122 1.122 19 C -0.093 4.093 20 C -0.074 4.074 21 C -0.137 4.137 22 C -0.045 4.045 23 Cl -0.029 7.029 24 C -0.170 4.170 25 C 0.080 3.920 26 F -0.115 7.115 27 H 0.075 0.925 28 H 0.071 0.929 29 H 0.080 0.920 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.077 0.923 33 H 0.080 0.920 34 H 0.166 0.834 35 H 0.044 0.956 36 H 0.077 0.923 37 H 0.211 0.789 38 H 0.075 0.925 39 H 0.169 0.831 40 H 0.174 0.826 41 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -15.450 17.725 -10.441 25.728 hybrid contribution -0.074 -0.828 1.042 1.332 sum -15.524 16.898 -9.400 24.797 Atomic orbital electron populations 1.21944 0.94080 1.01830 1.02041 1.21735 0.97251 0.97689 0.97231 1.21855 1.01116 0.94682 1.02540 1.20397 0.88731 0.97517 0.91281 0.90865 1.60489 1.06859 1.05021 1.57644 1.22315 0.97142 0.91935 0.95462 1.19471 0.90516 0.94276 0.80685 0.92947 1.86578 1.72866 1.53633 1.24621 1.21873 0.93066 1.09180 1.36327 0.94826 1.25900 1.01520 0.95901 0.94040 1.70096 1.18157 1.26133 1.43865 0.85947 0.76764 0.78960 0.81734 1.21116 1.22892 1.12242 1.19932 0.92119 0.99202 0.98007 1.21002 0.99776 0.92874 0.93708 1.21361 0.94917 1.00770 0.96645 1.20649 0.94880 0.97467 0.91527 1.98381 1.93103 1.72833 1.38615 1.20995 1.01661 0.98398 0.95915 1.17330 0.86944 0.93816 0.93906 1.91500 1.66140 1.71289 1.82599 0.92531 0.92908 0.91976 0.91478 0.91660 0.92269 0.92049 0.83386 0.95554 0.92266 0.78877 0.92545 0.83082 0.82650 0.82726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.85 7.57 71.98 0.54 -2.30 16 2 C -0.12 -2.58 2.79 -10.79 -0.03 -2.61 16 3 C -0.14 -2.67 8.45 71.98 0.61 -2.06 16 4 C 0.13 3.24 1.92 44.17 0.08 3.32 16 5 H 0.07 2.06 7.45 -2.39 -0.02 2.04 16 6 N -0.67 -18.81 4.86 -495.44 -2.41 -21.21 16 7 C 0.06 2.17 5.13 86.30 0.44 2.61 16 8 C 0.21 9.03 2.56 29.85 0.08 9.10 16 9 H 0.05 2.28 7.57 -2.39 -0.02 2.26 16 10 O -0.57 -23.83 10.01 -148.98 -1.49 -25.32 16 11 C -0.57 -30.95 9.34 25.60 0.24 -30.71 16 12 H 0.03 2.04 7.99 -2.91 -0.02 2.01 16 13 C 0.03 1.46 5.47 84.66 0.46 1.93 16 14 N -0.94 -58.28 13.96 21.45 0.30 -57.98 16 15 Si 0.94 44.26 26.99 68.60 1.85 46.11 16 16 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 17 H -0.30 -14.36 7.11 99.48 0.71 -13.65 16 18 H -0.20 -8.90 5.31 99.48 0.53 -8.37 16 19 C -0.09 -2.03 3.81 -19.82 -0.08 -2.11 16 20 C -0.06 -1.12 8.35 22.26 0.19 -0.93 16 21 C -0.12 -2.10 9.83 22.30 0.22 -1.88 16 22 C -0.02 -0.33 6.32 22.32 0.14 -0.19 16 23 Cl -0.06 -0.95 28.96 -2.72 -0.08 -1.03 16 24 C -0.15 -2.84 9.81 22.34 0.22 -2.62 16 25 C 0.10 2.18 5.93 22.37 0.13 2.31 16 26 F -0.14 -3.17 13.62 44.97 0.61 -2.56 16 27 H 0.06 1.13 5.89 -2.39 -0.01 1.11 16 28 H 0.05 1.14 7.35 -2.39 -0.02 1.12 16 29 H 0.06 1.11 8.14 -2.38 -0.02 1.09 16 30 H 0.07 1.61 7.67 -2.39 -0.02 1.59 16 31 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.06 1.08 6.45 -2.39 -0.02 1.07 16 33 H 0.06 1.10 6.57 -2.39 -0.02 1.09 16 34 H 0.35 8.96 6.31 -89.70 -0.57 8.40 16 35 H 0.03 0.96 7.69 -2.39 -0.02 0.94 16 36 H 0.06 2.21 7.93 -2.38 -0.02 2.19 16 37 H 0.36 14.00 9.04 -74.05 -0.67 13.33 16 38 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 39 H 0.15 3.06 6.93 -2.91 -0.02 3.04 16 40 H 0.16 2.15 8.06 -2.91 -0.02 2.13 16 41 H 0.16 2.42 8.06 -2.91 -0.02 2.40 16 Total: -1.00 -62.69 340.72 1.69 -61.00 By element: Atomic # 1 Polarization: 27.49 SS G_CDS: -0.35 Total: 27.15 kcal Atomic # 6 Polarization: -29.40 SS G_CDS: 3.25 Total: -26.15 kcal Atomic # 7 Polarization: -77.09 SS G_CDS: -2.11 Total: -79.19 kcal Atomic # 8 Polarization: -23.83 SS G_CDS: -1.49 Total: -25.32 kcal Atomic # 9 Polarization: -3.17 SS G_CDS: 0.61 Total: -2.56 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 1.85 Total: 46.11 kcal Atomic # 17 Polarization: -0.95 SS G_CDS: -0.08 Total: -1.03 kcal Total: -62.69 1.69 -61.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809577766.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.862 kcal (2) G-P(sol) polarization free energy of solvation -62.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds