Wall clock time and date at job start Fri Apr 10 2020 23:06:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47170 * 2 1 4 4 C 1.53006 * 109.47243 * 240.00629 * 2 1 3 5 5 C 1.50696 * 109.47252 * 59.99634 * 4 2 1 6 6 H 1.08004 * 119.99726 * 0.02562 * 5 4 2 7 7 C 1.37871 * 119.99982 * 180.02562 * 5 4 2 8 8 N 1.31515 * 120.00532 * 0.02562 * 7 5 4 9 9 Si 1.86805 * 120.00093 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.47217 * 59.99527 * 9 7 5 11 11 H 1.48502 * 109.47099 * 180.02562 * 9 7 5 12 12 H 1.48506 * 109.46814 * 299.99613 * 9 7 5 13 13 C 1.52996 * 109.47391 * 120.00176 * 2 1 3 14 14 N 1.46893 * 109.47137 * 300.00354 * 13 2 1 15 15 C 1.46902 * 111.00051 * 179.97438 * 14 13 2 16 16 C 1.50697 * 109.47217 * 179.97438 * 15 14 13 17 17 C 1.38230 * 120.01370 * 260.02518 * 16 15 14 18 18 C 1.38318 * 120.08205 * 180.02562 * 17 16 15 19 19 Cl 1.73601 * 119.94844 * 179.97438 * 18 17 16 20 20 C 1.38400 * 120.10035 * 359.96924 * 18 17 16 21 21 C 1.38288 * 120.01814 * 359.75328 * 20 18 17 22 22 F 1.35097 * 120.04403 * 180.24603 * 21 20 18 23 23 C 1.38612 * 120.00591 * 80.00523 * 16 15 14 24 24 O 1.35973 * 120.04837 * 359.97438 * 23 16 15 25 25 H 1.08997 * 109.47026 * 300.00041 * 1 2 3 26 26 H 1.08998 * 109.46926 * 59.99739 * 1 2 3 27 27 H 1.08995 * 109.47290 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47205 * 179.97438 * 3 2 1 29 29 H 1.08996 * 109.47407 * 300.00514 * 3 2 1 30 30 H 1.09004 * 109.46530 * 60.00116 * 3 2 1 31 31 H 1.08994 * 109.47047 * 180.02562 * 4 2 1 32 32 H 1.09004 * 109.46769 * 299.99842 * 4 2 1 33 33 H 0.96991 * 120.00263 * 180.02562 * 8 7 5 34 34 H 1.09002 * 109.47316 * 179.97438 * 13 2 1 35 35 H 1.09004 * 109.46923 * 59.99973 * 13 2 1 36 36 H 1.00900 * 111.00757 * 56.04346 * 14 13 2 37 37 H 1.09001 * 109.46963 * 59.99944 * 15 14 13 38 38 H 1.09001 * 109.47201 * 300.00227 * 15 14 13 39 39 H 1.08000 * 119.95459 * 359.97438 * 17 16 15 40 40 H 1.07997 * 119.99141 * 179.97438 * 20 18 17 41 41 H 0.96700 * 114.00082 * 90.00378 * 24 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 -1.2494 5 6 1.5377 -0.0107 -2.4797 6 1 0.9170 0.8676 -2.3805 7 6 1.8703 -0.4819 -3.7320 8 7 2.6257 -1.5517 -3.8528 9 14 1.2482 0.3991 -5.2572 10 1 1.7441 1.7988 -5.2572 11 1 1.7422 -0.3016 -6.4697 12 1 -0.2368 0.4001 -5.2571 13 6 2.0400 -0.7213 1.2492 14 7 1.5504 -0.0289 2.4486 15 6 2.0209 -0.6954 3.6702 16 6 1.5004 0.0418 4.8770 17 6 2.3202 0.9244 5.5550 18 6 1.8440 1.6014 6.6632 19 17 2.8769 2.7085 7.5124 20 6 0.5453 1.3976 7.0959 21 6 -0.2803 0.5199 6.4174 22 9 -1.5496 0.3243 6.8365 23 6 0.1990 -0.1647 5.3074 24 8 -0.6090 -1.0318 4.6410 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9564 -0.8899 30 1 1.6766 1.9563 0.8901 31 1 3.1300 -0.7215 -1.2491 32 1 1.6767 -1.7488 -1.2494 33 1 2.8600 -1.8830 -4.7338 34 1 3.1301 -0.7216 1.2489 35 1 1.6767 -1.7490 1.2491 36 1 0.5438 0.0412 2.4402 37 1 3.1108 -0.6955 3.6872 38 1 1.6572 -1.7228 3.6867 39 1 3.3341 1.0849 5.2194 40 1 0.1755 1.9268 7.9617 41 1 -0.5662 -1.9405 4.9690 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000809777671.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:06:53 Heat of formation + Delta-G solvation = -87.361635 kcal Electronic energy + Delta-G solvation = -23763.883721 eV Core-core repulsion = 20004.594040 eV Total energy + Delta-G solvation = -3759.289681 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.114 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.26736 -40.26694 -37.69171 -37.51825 -36.43701 -34.61218 -32.38110 -31.04977 -29.85730 -27.15767 -26.36205 -26.26909 -24.42866 -23.13594 -22.36838 -21.71237 -18.95894 -18.08367 -17.55460 -17.28474 -16.45809 -16.21719 -15.76429 -15.41117 -15.13754 -14.82150 -14.38862 -14.26515 -13.98069 -13.46956 -13.29279 -13.11516 -12.91202 -12.63634 -12.35175 -12.15243 -11.96275 -11.72211 -11.41175 -11.38252 -10.97647 -10.91959 -10.85392 -10.77900 -10.47156 -10.25597 -10.13058 -9.67470 -9.34194 -8.99649 -8.90973 -8.83080 -8.30338 -8.14916 -5.95193 -3.95209 0.46570 0.61447 1.62887 2.86464 3.35905 3.40320 3.42885 3.51973 3.87209 4.15586 4.48263 4.55782 4.60237 4.69837 4.87831 5.16426 5.31383 5.40632 5.42567 5.55948 5.63805 5.69470 5.75483 5.91234 6.00119 6.15609 6.24230 6.33670 6.52531 6.68062 6.80150 6.85189 7.14188 7.19669 7.22512 7.27571 7.36709 7.62940 7.71156 7.86239 8.05098 8.49654 9.09928 9.67583 11.16487 Molecular weight = 315.11amu Principal moments of inertia in cm(-1) A = 0.021415 B = 0.002641 C = 0.002501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.201481 B =10599.765181 C =11192.828015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.058 4.058 3 C -0.116 4.116 4 C 0.035 3.965 5 C -0.507 4.507 6 H 0.059 0.941 7 C 0.055 3.945 8 N -0.898 5.898 9 Si 0.888 3.112 10 H -0.277 1.277 11 H -0.289 1.289 12 H -0.278 1.278 13 C 0.070 3.930 14 N -0.679 5.679 15 C 0.101 3.899 16 C -0.059 4.059 17 C -0.086 4.086 18 C -0.017 4.017 19 Cl -0.055 7.055 20 C -0.138 4.138 21 C 0.088 3.912 22 F -0.127 7.127 23 C 0.085 3.915 24 O -0.479 6.479 25 H 0.033 0.967 26 H 0.064 0.936 27 H 0.040 0.960 28 H 0.039 0.961 29 H 0.054 0.946 30 H 0.042 0.958 31 H 0.015 0.985 32 H 0.012 0.988 33 H 0.259 0.741 34 H 0.067 0.933 35 H 0.025 0.975 36 H 0.346 0.654 37 H 0.085 0.915 38 H 0.042 0.958 39 H 0.147 0.853 40 H 0.148 0.852 41 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.912 2.661 24.841 25.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.059 4.059 3 C -0.174 4.174 4 C -0.003 4.003 5 C -0.545 4.545 6 H 0.077 0.923 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.716 3.284 10 H -0.203 1.203 11 H -0.215 1.215 12 H -0.204 1.204 13 C -0.058 4.058 14 N -0.312 5.312 15 C -0.028 4.028 16 C -0.060 4.060 17 C -0.105 4.105 18 C -0.043 4.043 19 Cl -0.026 7.026 20 C -0.158 4.158 21 C 0.067 3.933 22 F -0.105 7.105 23 C 0.038 3.962 24 O -0.289 6.289 25 H 0.052 0.948 26 H 0.083 0.917 27 H 0.059 0.941 28 H 0.058 0.942 29 H 0.073 0.927 30 H 0.061 0.939 31 H 0.033 0.967 32 H 0.031 0.969 33 H 0.069 0.931 34 H 0.086 0.914 35 H 0.043 0.957 36 H 0.166 0.834 37 H 0.103 0.897 38 H 0.060 0.940 39 H 0.165 0.835 40 H 0.166 0.834 41 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -1.435 3.576 24.452 24.754 hybrid contribution -0.934 -0.760 -0.472 1.293 sum -2.370 2.816 23.980 24.261 Atomic orbital electron populations 1.21763 0.95987 1.00419 1.00442 1.20633 0.94804 0.96134 0.94279 1.21602 0.99740 0.95803 1.00210 1.19114 0.96071 0.94959 0.90130 1.21204 1.30824 1.11892 0.90621 0.92338 1.25007 0.95405 0.95108 0.99030 1.69950 1.37314 1.23183 1.23389 0.86729 0.79166 0.79844 0.82684 1.20296 1.21455 1.20356 1.22136 0.99774 0.94786 0.89103 1.60675 1.17316 1.52977 1.00254 1.20764 1.00494 0.94434 0.87107 1.20077 0.91462 0.97468 0.97009 1.20965 1.01380 0.94912 0.93278 1.20566 0.91634 0.96291 0.95851 1.98395 1.66565 1.61010 1.76639 1.20866 0.92546 1.00209 1.02171 1.17788 0.80517 1.00157 0.94803 1.91529 1.35713 1.93900 1.89359 1.18352 0.89959 0.96036 0.91818 1.84929 1.63620 1.22005 1.58370 0.94784 0.91742 0.94076 0.94154 0.92682 0.93919 0.96688 0.96927 0.93118 0.91445 0.95682 0.83361 0.89694 0.94001 0.83485 0.83385 0.75004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.43 7.89 37.16 0.29 -2.14 16 2 C -0.06 -1.15 0.60 -154.50 -0.09 -1.24 16 3 C -0.12 -2.25 8.06 37.16 0.30 -1.95 16 4 C 0.03 0.87 4.04 -27.88 -0.11 0.76 16 5 C -0.51 -13.85 7.65 -34.44 -0.26 -14.12 16 6 H 0.06 1.56 5.68 -52.48 -0.30 1.26 16 7 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 8 N -0.90 -26.80 13.29 55.43 0.74 -26.07 16 9 Si 0.89 21.63 29.54 -169.99 -5.02 16.61 16 10 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 11 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 12 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 13 C 0.07 1.17 4.65 -3.83 -0.02 1.15 16 14 N -0.68 -9.52 5.70 -115.06 -0.66 -10.18 16 15 C 0.10 1.10 5.47 -4.98 -0.03 1.08 16 16 C -0.06 -0.59 5.40 -104.49 -0.56 -1.16 16 17 C -0.09 -0.80 9.45 -39.55 -0.37 -1.17 16 18 C -0.02 -0.15 6.32 -39.49 -0.25 -0.40 16 19 Cl -0.06 -0.46 28.95 -51.86 -1.50 -1.96 16 20 C -0.14 -1.22 9.80 -39.50 -0.39 -1.61 16 21 C 0.09 0.88 7.31 -39.30 -0.29 0.60 16 22 F -0.13 -1.38 17.11 2.25 0.04 -1.34 16 23 C 0.09 0.87 6.68 -39.18 -0.26 0.61 16 24 O -0.48 -4.70 12.54 -19.65 -0.25 -4.95 16 25 H 0.03 0.56 6.57 -51.93 -0.34 0.22 16 26 H 0.06 1.32 6.62 -51.93 -0.34 0.98 16 27 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 28 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.05 1.14 6.62 -51.93 -0.34 0.80 16 30 H 0.04 0.75 7.60 -51.93 -0.39 0.36 16 31 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 34 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.35 5.06 6.70 -39.29 -0.26 4.80 16 37 H 0.08 0.86 8.00 -51.93 -0.42 0.45 16 38 H 0.04 0.43 7.85 -51.93 -0.41 0.02 16 39 H 0.15 1.21 8.04 -52.49 -0.42 0.79 16 40 H 0.15 1.05 8.06 -52.49 -0.42 0.63 16 41 H 0.39 2.08 9.06 45.56 0.41 2.49 16 LS Contribution 355.20 15.07 5.35 5.35 Total: -1.00 -30.35 355.20 -8.35 -38.70 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: -4.91 Total: 1.98 kcal Atomic # 6 Polarization: -15.99 SS G_CDS: -2.14 Total: -18.14 kcal Atomic # 7 Polarization: -36.32 SS G_CDS: 0.08 Total: -36.24 kcal Atomic # 8 Polarization: -4.70 SS G_CDS: -0.25 Total: -4.95 kcal Atomic # 9 Polarization: -1.38 SS G_CDS: 0.04 Total: -1.34 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Atomic # 17 Polarization: -0.46 SS G_CDS: -1.50 Total: -1.96 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -30.35 -8.35 -38.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809777671.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.663 kcal (2) G-P(sol) polarization free energy of solvation -30.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds