Wall clock time and date at job start Fri Apr 10 2020 23:06:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47170 * 2 1 4 4 C 1.53006 * 109.47243 * 240.00629 * 2 1 3 5 5 C 1.50696 * 109.47252 * 59.99634 * 4 2 1 6 6 H 1.08004 * 119.99726 * 0.02562 * 5 4 2 7 7 C 1.37871 * 119.99982 * 180.02562 * 5 4 2 8 8 N 1.31515 * 120.00532 * 0.02562 * 7 5 4 9 9 Si 1.86805 * 120.00093 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.47217 * 59.99527 * 9 7 5 11 11 H 1.48502 * 109.47099 * 180.02562 * 9 7 5 12 12 H 1.48506 * 109.46814 * 299.99613 * 9 7 5 13 13 C 1.52996 * 109.47391 * 120.00176 * 2 1 3 14 14 N 1.46893 * 109.47137 * 300.00354 * 13 2 1 15 15 C 1.46902 * 111.00051 * 179.97438 * 14 13 2 16 16 C 1.50697 * 109.47217 * 179.97438 * 15 14 13 17 17 C 1.38230 * 120.01370 * 260.02518 * 16 15 14 18 18 C 1.38318 * 120.08205 * 180.02562 * 17 16 15 19 19 Cl 1.73601 * 119.94844 * 179.97438 * 18 17 16 20 20 C 1.38400 * 120.10035 * 359.96924 * 18 17 16 21 21 C 1.38288 * 120.01814 * 359.75328 * 20 18 17 22 22 F 1.35097 * 120.04403 * 180.24603 * 21 20 18 23 23 C 1.38612 * 120.00591 * 80.00523 * 16 15 14 24 24 O 1.35973 * 120.04837 * 359.97438 * 23 16 15 25 25 H 1.08997 * 109.47026 * 300.00041 * 1 2 3 26 26 H 1.08998 * 109.46926 * 59.99739 * 1 2 3 27 27 H 1.08995 * 109.47290 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47205 * 179.97438 * 3 2 1 29 29 H 1.08996 * 109.47407 * 300.00514 * 3 2 1 30 30 H 1.09004 * 109.46530 * 60.00116 * 3 2 1 31 31 H 1.08994 * 109.47047 * 180.02562 * 4 2 1 32 32 H 1.09004 * 109.46769 * 299.99842 * 4 2 1 33 33 H 0.96991 * 120.00263 * 180.02562 * 8 7 5 34 34 H 1.09002 * 109.47316 * 179.97438 * 13 2 1 35 35 H 1.09004 * 109.46923 * 59.99973 * 13 2 1 36 36 H 1.00900 * 111.00757 * 56.04346 * 14 13 2 37 37 H 1.09001 * 109.46963 * 59.99944 * 15 14 13 38 38 H 1.09001 * 109.47201 * 300.00227 * 15 14 13 39 39 H 1.08000 * 119.95459 * 359.97438 * 17 16 15 40 40 H 1.07997 * 119.99141 * 179.97438 * 20 18 17 41 41 H 0.96700 * 114.00082 * 90.00378 * 24 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 -1.2494 5 6 1.5377 -0.0107 -2.4797 6 1 0.9170 0.8676 -2.3805 7 6 1.8703 -0.4819 -3.7320 8 7 2.6257 -1.5517 -3.8528 9 14 1.2482 0.3991 -5.2572 10 1 1.7441 1.7988 -5.2572 11 1 1.7422 -0.3016 -6.4697 12 1 -0.2368 0.4001 -5.2571 13 6 2.0400 -0.7213 1.2492 14 7 1.5504 -0.0289 2.4486 15 6 2.0209 -0.6954 3.6702 16 6 1.5004 0.0418 4.8770 17 6 2.3202 0.9244 5.5550 18 6 1.8440 1.6014 6.6632 19 17 2.8769 2.7085 7.5124 20 6 0.5453 1.3976 7.0959 21 6 -0.2803 0.5199 6.4174 22 9 -1.5496 0.3243 6.8365 23 6 0.1990 -0.1647 5.3074 24 8 -0.6090 -1.0318 4.6410 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9564 -0.8899 30 1 1.6766 1.9563 0.8901 31 1 3.1300 -0.7215 -1.2491 32 1 1.6767 -1.7488 -1.2494 33 1 2.8600 -1.8830 -4.7338 34 1 3.1301 -0.7216 1.2489 35 1 1.6767 -1.7490 1.2491 36 1 0.5438 0.0412 2.4402 37 1 3.1108 -0.6955 3.6872 38 1 1.6572 -1.7228 3.6867 39 1 3.3341 1.0849 5.2194 40 1 0.1755 1.9268 7.9617 41 1 -0.5662 -1.9405 4.9690 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000809777671.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:06:53 Heat of formation + Delta-G solvation = -106.113974 kcal Electronic energy + Delta-G solvation = -23764.696884 eV Core-core repulsion = 20004.594040 eV Total energy + Delta-G solvation = -3760.102843 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.114 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -50.04215 -41.01503 -39.08189 -38.28589 -37.14437 -35.90230 -34.29060 -32.06503 -30.59967 -29.02143 -27.88383 -27.52745 -25.88255 -24.01959 -23.82013 -22.61838 -19.75691 -19.47553 -18.45581 -18.30100 -18.05823 -17.19925 -16.68103 -16.48266 -16.46397 -15.93018 -15.70012 -15.40058 -15.07109 -14.65587 -14.43465 -14.27993 -14.01073 -13.87086 -13.72119 -13.44235 -13.17267 -13.07448 -12.74423 -12.70204 -12.40147 -12.22653 -12.16850 -12.08496 -12.05629 -11.89080 -11.67942 -11.35908 -10.84950 -10.74935 -10.48174 -10.03953 -9.62991 -9.26918 -8.12556 -6.19104 -0.24105 -0.11137 0.95192 1.41800 1.43654 1.50942 2.14613 2.45017 2.82695 3.16632 3.21387 3.33792 3.59001 3.88066 3.95766 4.08386 4.20818 4.24389 4.39899 4.43974 4.58705 4.70430 4.77079 4.81923 4.83462 4.96372 4.98612 5.09621 5.14898 5.22667 5.23822 5.46496 5.53750 5.55877 5.60396 5.66936 5.89113 5.94754 6.06561 6.39132 6.47766 6.60408 6.95809 7.48031 8.99496 Molecular weight = 315.11amu Principal moments of inertia in cm(-1) A = 0.021415 B = 0.002641 C = 0.002501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.201481 B =10599.765181 C =11192.828015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.056 4.056 3 C -0.107 4.107 4 C 0.042 3.958 5 C -0.515 4.515 6 H 0.064 0.936 7 C -0.003 4.003 8 N -0.937 5.937 9 Si 0.953 3.047 10 H -0.269 1.269 11 H -0.287 1.287 12 H -0.269 1.269 13 C 0.083 3.917 14 N -0.679 5.679 15 C 0.102 3.898 16 C -0.066 4.066 17 C -0.083 4.083 18 C -0.021 4.021 19 Cl -0.049 7.049 20 C -0.130 4.130 21 C 0.072 3.928 22 F -0.134 7.134 23 C 0.087 3.913 24 O -0.493 6.493 25 H 0.061 0.939 26 H 0.045 0.955 27 H 0.037 0.963 28 H 0.034 0.966 29 H 0.036 0.964 30 H 0.064 0.936 31 H -0.013 1.013 32 H -0.015 1.015 33 H 0.260 0.740 34 H 0.064 0.936 35 H 0.021 0.979 36 H 0.344 0.656 37 H 0.094 0.906 38 H 0.051 0.949 39 H 0.158 0.842 40 H 0.164 0.836 41 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.419 3.760 26.067 26.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.056 4.056 3 C -0.164 4.164 4 C 0.004 3.996 5 C -0.553 4.553 6 H 0.082 0.918 7 C -0.199 4.199 8 N -0.578 5.578 9 Si 0.779 3.221 10 H -0.194 1.194 11 H -0.213 1.213 12 H -0.194 1.194 13 C -0.046 4.046 14 N -0.311 5.311 15 C -0.026 4.026 16 C -0.068 4.068 17 C -0.102 4.102 18 C -0.048 4.048 19 Cl -0.020 7.020 20 C -0.149 4.149 21 C 0.052 3.948 22 F -0.113 7.113 23 C 0.040 3.960 24 O -0.306 6.306 25 H 0.079 0.921 26 H 0.064 0.936 27 H 0.056 0.944 28 H 0.053 0.947 29 H 0.055 0.945 30 H 0.083 0.917 31 H 0.006 0.994 32 H 0.003 0.997 33 H 0.068 0.932 34 H 0.083 0.917 35 H 0.040 0.960 36 H 0.164 0.836 37 H 0.112 0.888 38 H 0.069 0.931 39 H 0.175 0.825 40 H 0.182 0.818 41 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges -1.948 4.674 25.703 26.197 hybrid contribution -0.763 -1.120 -0.773 1.560 sum -2.711 3.554 24.930 25.327 Atomic orbital electron populations 1.21663 0.95048 1.00308 1.00788 1.20501 0.95496 0.96153 0.93454 1.21498 0.99313 0.95283 1.00305 1.18988 0.94192 0.93957 0.92464 1.21599 1.30277 1.11889 0.91578 0.91818 1.25879 0.95727 0.95892 1.02438 1.70087 1.38842 1.24846 1.24067 0.85675 0.78902 0.78841 0.78695 1.19379 1.21308 1.19429 1.21825 0.99467 0.94285 0.88978 1.60599 1.17079 1.53066 1.00355 1.20792 1.01054 0.94829 0.85946 1.19937 0.91618 0.98182 0.97051 1.21111 1.01745 0.94269 0.93077 1.20590 0.91791 0.96504 0.95937 1.98401 1.66362 1.60763 1.76480 1.21043 0.92280 0.99415 1.02192 1.17907 0.80491 1.01008 0.95376 1.91508 1.36242 1.94058 1.89485 1.18419 0.89946 0.95989 0.91643 1.84870 1.63670 1.23323 1.58771 0.92068 0.93639 0.94432 0.94702 0.94514 0.91697 0.99447 0.99667 0.93159 0.91706 0.96042 0.83602 0.88778 0.93054 0.82485 0.81806 0.72895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.45 7.89 71.98 0.57 -3.88 16 2 C -0.06 -2.18 0.60 -52.18 -0.03 -2.21 16 3 C -0.11 -4.03 8.06 71.98 0.58 -3.45 16 4 C 0.04 2.13 4.04 29.85 0.12 2.25 16 5 C -0.52 -28.51 7.65 25.60 0.20 -28.31 16 6 H 0.06 3.40 5.68 -2.91 -0.02 3.38 16 7 C 0.00 -0.15 5.46 84.65 0.46 0.31 16 8 N -0.94 -57.08 13.29 21.45 0.28 -56.79 16 9 Si 0.95 44.52 29.54 68.60 2.03 46.54 16 10 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 11 H -0.29 -13.26 7.11 99.48 0.71 -12.56 16 12 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 13 C 0.08 2.70 4.65 86.30 0.40 3.10 16 14 N -0.68 -17.68 5.70 -517.94 -2.95 -20.63 16 15 C 0.10 2.02 5.47 85.56 0.47 2.49 16 16 C -0.07 -1.20 5.40 -19.78 -0.11 -1.31 16 17 C -0.08 -1.35 9.45 22.29 0.21 -1.14 16 18 C -0.02 -0.34 6.32 22.33 0.14 -0.20 16 19 Cl -0.05 -0.72 28.95 -2.72 -0.08 -0.80 16 20 C -0.13 -2.04 9.80 22.32 0.22 -1.82 16 21 C 0.07 1.34 7.31 22.45 0.16 1.50 16 22 F -0.13 -2.77 17.11 44.97 0.77 -2.00 16 23 C 0.09 1.61 6.68 22.53 0.15 1.77 16 24 O -0.49 -8.83 12.54 -93.24 -1.17 -10.00 16 25 H 0.06 1.91 6.57 -2.39 -0.02 1.90 16 26 H 0.04 1.83 6.62 -2.39 -0.02 1.81 16 27 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 28 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.04 1.49 6.62 -2.39 -0.02 1.48 16 30 H 0.06 2.15 7.60 -2.38 -0.02 2.13 16 31 H -0.01 -0.72 8.14 -2.39 -0.02 -0.74 16 32 H -0.02 -0.85 8.14 -2.38 -0.02 -0.86 16 33 H 0.26 15.02 8.31 -92.72 -0.77 14.25 16 34 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 35 H 0.02 0.71 8.14 -2.38 -0.02 0.69 16 36 H 0.34 9.28 6.70 -89.69 -0.60 8.67 16 37 H 0.09 1.70 8.00 -2.39 -0.02 1.68 16 38 H 0.05 0.94 7.85 -2.39 -0.02 0.92 16 39 H 0.16 2.21 8.04 -2.91 -0.02 2.18 16 40 H 0.16 1.96 8.06 -2.91 -0.02 1.94 16 41 H 0.41 3.67 9.06 -74.06 -0.67 3.00 16 Total: -1.00 -64.96 355.20 2.22 -62.74 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: -0.21 Total: 11.84 kcal Atomic # 6 Polarization: -34.44 SS G_CDS: 3.54 Total: -30.90 kcal Atomic # 7 Polarization: -74.75 SS G_CDS: -2.67 Total: -77.42 kcal Atomic # 8 Polarization: -8.83 SS G_CDS: -1.17 Total: -10.00 kcal Atomic # 9 Polarization: -2.77 SS G_CDS: 0.77 Total: -2.00 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.54 kcal Atomic # 17 Polarization: -0.72 SS G_CDS: -0.08 Total: -0.80 kcal Total: -64.96 2.22 -62.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809777671.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.374 kcal (2) G-P(sol) polarization free energy of solvation -64.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds