Wall clock time and date at job start Fri Apr 10 2020 23:06:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52997 * 109.47316 * 2 1 4 4 C 1.52993 * 109.47519 * 239.99490 * 2 1 3 5 5 C 1.50696 * 109.46986 * 60.00131 * 4 2 1 6 6 H 1.08002 * 120.00328 * 359.97438 * 5 4 2 7 7 C 1.37881 * 120.00109 * 179.97438 * 5 4 2 8 8 N 1.31516 * 120.00164 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 120.00068 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47055 * 60.00438 * 9 7 5 11 11 H 1.48500 * 109.47044 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47155 * 300.00392 * 9 7 5 13 13 C 1.53005 * 109.47048 * 119.99208 * 2 1 3 14 14 N 1.46900 * 109.47290 * 300.00628 * 13 2 1 15 15 C 1.46901 * 110.99663 * 179.97438 * 14 13 2 16 16 C 1.50706 * 109.46848 * 180.02562 * 15 14 13 17 17 C 1.38193 * 119.99366 * 259.99567 * 16 15 14 18 18 C 1.38292 * 120.06496 * 179.97438 * 17 16 15 19 19 Cl 1.73603 * 119.96951 * 180.02562 * 18 17 16 20 20 C 1.38611 * 120.06174 * 0.02562 * 18 17 16 21 21 F 1.35100 * 120.00216 * 179.97438 * 20 18 17 22 22 C 1.38333 * 119.99475 * 0.02562 * 20 18 17 23 23 C 1.38703 * 120.00133 * 79.72066 * 16 15 14 24 24 O 1.35922 * 120.02712 * 359.97438 * 23 16 15 25 25 H 1.08999 * 109.47560 * 300.00221 * 1 2 3 26 26 H 1.08999 * 109.47221 * 60.00509 * 1 2 3 27 27 H 1.08998 * 109.47063 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47393 * 179.97438 * 3 2 1 29 29 H 1.09007 * 109.47151 * 299.99681 * 3 2 1 30 30 H 1.08999 * 109.47727 * 59.99368 * 3 2 1 31 31 H 1.08998 * 109.47393 * 179.97438 * 4 2 1 32 32 H 1.08998 * 109.47121 * 300.00170 * 4 2 1 33 33 H 0.96999 * 120.00380 * 179.97438 * 8 7 5 34 34 H 1.09001 * 109.47563 * 179.97438 * 13 2 1 35 35 H 1.08998 * 109.46791 * 60.00321 * 13 2 1 36 36 H 1.00893 * 110.99566 * 303.94674 * 14 13 2 37 37 H 1.08995 * 109.47466 * 59.99855 * 15 14 13 38 38 H 1.08999 * 109.47282 * 299.99304 * 15 14 13 39 39 H 1.08002 * 119.96882 * 359.97438 * 17 16 15 40 40 H 1.07998 * 120.02843 * 179.97438 * 22 20 18 41 41 H 0.96704 * 114.00042 * 90.00381 * 24 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 1.5378 -0.0110 -2.4796 6 1 0.9165 0.8669 -2.3806 7 6 1.8713 -0.4818 -3.7319 8 7 2.6275 -1.5511 -3.8525 9 14 1.2482 0.3983 -5.2572 10 1 1.7421 1.7987 -5.2572 11 1 1.7433 -0.3018 -6.4696 12 1 -0.2368 0.3972 -5.2573 13 6 2.0399 -0.7211 1.2494 14 7 1.5502 -0.0286 2.4487 15 6 2.0207 -0.6950 3.6704 16 6 1.4990 0.0417 4.8772 17 6 2.3182 0.9240 5.5555 18 6 1.8408 1.6012 6.6628 19 17 2.8719 2.7095 7.5126 20 6 0.5398 1.3958 7.0946 21 9 0.0748 2.0576 8.1768 22 6 -0.2821 0.5124 6.4181 23 6 0.1948 -0.1616 5.3036 24 8 -0.6132 -1.0247 4.6331 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9563 -0.8901 30 1 1.6766 1.9564 0.8899 31 1 3.1300 -0.7209 -1.2493 32 1 1.6767 -1.7490 -1.2490 33 1 2.8619 -1.8826 -4.7334 34 1 3.1299 -0.7215 1.2492 35 1 1.6766 -1.7488 1.2494 36 1 1.8196 0.9437 2.4401 37 1 3.1105 -0.6951 3.6875 38 1 1.6569 -1.7223 3.6871 39 1 3.3323 1.0849 5.2206 40 1 -1.2957 0.3517 6.7544 41 1 -0.5742 -1.9341 4.9594 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000816612595.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:06:55 Heat of formation + Delta-G solvation = -84.711983 kcal Electronic energy + Delta-G solvation = -23673.549279 eV Core-core repulsion = 19914.374495 eV Total energy + Delta-G solvation = -3759.174783 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.114 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.31810 -40.28964 -37.63406 -37.42061 -36.34936 -34.59971 -32.36202 -31.06976 -29.98901 -27.07012 -26.32249 -26.10128 -24.33175 -23.47613 -22.30333 -21.62227 -19.05784 -17.97990 -17.47027 -17.16103 -16.39118 -16.16682 -16.06034 -15.32280 -14.90469 -14.68359 -14.35496 -14.25135 -14.15439 -13.85097 -13.19613 -13.10071 -12.69322 -12.56137 -12.42609 -12.02320 -11.89283 -11.71694 -11.43563 -11.32411 -11.00778 -10.91004 -10.86068 -10.77489 -10.47341 -10.25974 -10.13040 -9.67234 -9.38058 -9.03265 -8.86783 -8.76966 -8.30698 -8.11856 -5.95581 -3.95555 0.49890 0.62058 1.64940 2.87793 3.35488 3.39982 3.42497 3.49810 3.94320 4.20656 4.37486 4.48763 4.59643 4.74849 5.06787 5.20229 5.34452 5.37995 5.40323 5.52985 5.60539 5.71956 5.75411 5.98533 5.99556 6.16339 6.23076 6.33473 6.51273 6.69700 6.80090 6.85586 7.19039 7.22153 7.28743 7.32815 7.37830 7.61391 7.70815 7.86100 8.04716 8.49320 9.09610 9.67200 11.16077 Molecular weight = 315.11amu Principal moments of inertia in cm(-1) A = 0.025123 B = 0.002521 C = 0.002440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.259471 B =11102.499094 C =11473.341869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.058 4.058 3 C -0.129 4.129 4 C 0.034 3.966 5 C -0.507 4.507 6 H 0.058 0.942 7 C 0.055 3.945 8 N -0.898 5.898 9 Si 0.888 3.112 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.277 1.277 13 C 0.071 3.929 14 N -0.675 5.675 15 C 0.104 3.896 16 C -0.104 4.104 17 C -0.062 4.062 18 C -0.086 4.086 19 Cl -0.051 7.051 20 C 0.124 3.876 21 F -0.126 7.126 22 C -0.176 4.176 23 C 0.171 3.829 24 O -0.473 6.473 25 H 0.043 0.957 26 H 0.053 0.947 27 H 0.039 0.961 28 H 0.040 0.960 29 H 0.064 0.936 30 H 0.033 0.967 31 H 0.012 0.988 32 H 0.015 0.985 33 H 0.259 0.741 34 H 0.023 0.977 35 H 0.067 0.933 36 H 0.339 0.661 37 H 0.038 0.962 38 H 0.083 0.917 39 H 0.146 0.854 40 H 0.150 0.850 41 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.731 2.578 24.189 24.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.058 4.058 3 C -0.187 4.187 4 C -0.003 4.003 5 C -0.545 4.545 6 H 0.077 0.923 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.716 3.284 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.203 1.203 13 C -0.057 4.057 14 N -0.307 5.307 15 C -0.025 4.025 16 C -0.106 4.106 17 C -0.081 4.081 18 C -0.113 4.113 19 Cl -0.022 7.022 20 C 0.103 3.897 21 F -0.104 7.104 22 C -0.196 4.196 23 C 0.125 3.875 24 O -0.283 6.283 25 H 0.062 0.938 26 H 0.072 0.928 27 H 0.058 0.942 28 H 0.059 0.941 29 H 0.083 0.917 30 H 0.052 0.948 31 H 0.030 0.970 32 H 0.033 0.967 33 H 0.069 0.931 34 H 0.042 0.958 35 H 0.086 0.914 36 H 0.158 0.842 37 H 0.056 0.944 38 H 0.101 0.899 39 H 0.164 0.836 40 H 0.168 0.832 41 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -2.329 2.740 23.830 24.099 hybrid contribution 0.768 0.486 -0.386 0.987 sum -1.561 3.225 23.444 23.716 Atomic orbital electron populations 1.21582 0.94857 1.00591 1.00181 1.20624 0.95971 0.94942 0.94276 1.21774 0.99633 0.96807 1.00455 1.19113 0.95835 0.95188 0.90162 1.21206 1.30746 1.11962 0.90625 0.92347 1.25010 0.95400 0.95118 0.99033 1.69952 1.37294 1.23194 1.23392 0.86729 0.79230 0.79775 0.82690 1.20360 1.21457 1.20301 1.22131 0.96255 0.98203 0.89125 1.60575 1.63521 1.06261 1.00313 1.20711 0.96706 0.97922 0.87117 1.20312 0.92988 0.99072 0.98194 1.20814 1.00830 0.93998 0.92481 1.20910 0.91498 1.00234 0.98693 1.98391 1.66408 1.60812 1.76579 1.17117 0.91133 0.94888 0.86519 1.91549 1.88642 1.78649 1.51579 1.21383 1.01511 0.99878 0.96782 1.17951 0.88036 0.92649 0.88885 1.84955 1.63444 1.21765 1.58147 0.93784 0.92822 0.94189 0.94125 0.91705 0.94839 0.96957 0.96682 0.93120 0.95828 0.91422 0.84190 0.94378 0.89867 0.83608 0.83188 0.74967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.23 8.06 37.15 0.30 -1.93 16 2 C -0.06 -1.13 0.60 -154.51 -0.09 -1.22 16 3 C -0.13 -2.37 7.89 37.16 0.29 -2.08 16 4 C 0.03 0.86 4.04 -27.89 -0.11 0.74 16 5 C -0.51 -13.80 7.65 -34.44 -0.26 -14.06 16 6 H 0.06 1.55 5.68 -52.49 -0.30 1.25 16 7 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 8 N -0.90 -26.73 13.29 55.43 0.74 -26.00 16 9 Si 0.89 21.57 29.54 -169.99 -5.02 16.54 16 10 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 12 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 13 C 0.07 1.16 4.65 -3.82 -0.02 1.15 16 14 N -0.67 -9.17 5.70 -115.05 -0.66 -9.82 16 15 C 0.10 1.11 5.47 -4.97 -0.03 1.08 16 16 C -0.10 -1.01 5.41 -104.46 -0.56 -1.58 16 17 C -0.06 -0.57 9.44 -39.58 -0.37 -0.94 16 18 C -0.09 -0.84 6.33 -39.42 -0.25 -1.09 16 19 Cl -0.05 -0.49 28.61 -51.86 -1.48 -1.97 16 20 C 0.12 1.24 7.27 -39.41 -0.29 0.95 16 21 F -0.13 -1.33 16.83 2.25 0.04 -1.29 16 22 C -0.18 -1.59 9.96 -39.37 -0.39 -1.98 16 23 C 0.17 1.63 6.68 -39.24 -0.26 1.37 16 24 O -0.47 -4.41 12.74 -19.50 -0.25 -4.65 16 25 H 0.04 0.79 7.60 -51.93 -0.39 0.39 16 26 H 0.05 1.12 6.62 -51.93 -0.34 0.77 16 27 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.06 1.30 6.62 -51.93 -0.34 0.96 16 30 H 0.03 0.53 6.57 -51.93 -0.34 0.18 16 31 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.26 7.34 8.31 -40.82 -0.34 7.01 16 34 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 35 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 36 H 0.34 4.58 6.76 -39.30 -0.27 4.32 16 37 H 0.04 0.38 8.00 -51.93 -0.42 -0.04 16 38 H 0.08 0.84 7.86 -51.93 -0.41 0.43 16 39 H 0.15 1.13 8.04 -52.49 -0.42 0.71 16 40 H 0.15 1.11 8.06 -52.49 -0.42 0.69 16 41 H 0.39 1.73 9.06 45.56 0.41 2.14 16 LS Contribution 354.97 15.07 5.35 5.35 Total: -1.00 -30.67 354.97 -8.35 -39.02 By element: Atomic # 1 Polarization: 5.88 SS G_CDS: -4.91 Total: 0.96 kcal Atomic # 6 Polarization: -15.99 SS G_CDS: -2.15 Total: -18.13 kcal Atomic # 7 Polarization: -35.90 SS G_CDS: 0.08 Total: -35.82 kcal Atomic # 8 Polarization: -4.41 SS G_CDS: -0.25 Total: -4.65 kcal Atomic # 9 Polarization: -1.33 SS G_CDS: 0.04 Total: -1.29 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.54 kcal Atomic # 17 Polarization: -0.49 SS G_CDS: -1.48 Total: -1.97 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -30.67 -8.35 -39.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000816612595.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.692 kcal (2) G-P(sol) polarization free energy of solvation -30.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds