Wall clock time and date at job start Fri Apr 10 2020 23:06:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52997 * 109.47316 * 2 1 4 4 C 1.52993 * 109.47519 * 239.99490 * 2 1 3 5 5 C 1.50696 * 109.46986 * 60.00131 * 4 2 1 6 6 H 1.08002 * 120.00328 * 359.97438 * 5 4 2 7 7 C 1.37881 * 120.00109 * 179.97438 * 5 4 2 8 8 N 1.31516 * 120.00164 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 120.00068 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47055 * 60.00438 * 9 7 5 11 11 H 1.48500 * 109.47044 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47155 * 300.00392 * 9 7 5 13 13 C 1.53005 * 109.47048 * 119.99208 * 2 1 3 14 14 N 1.46900 * 109.47290 * 300.00628 * 13 2 1 15 15 C 1.46901 * 110.99663 * 179.97438 * 14 13 2 16 16 C 1.50706 * 109.46848 * 180.02562 * 15 14 13 17 17 C 1.38193 * 119.99366 * 259.99567 * 16 15 14 18 18 C 1.38292 * 120.06496 * 179.97438 * 17 16 15 19 19 Cl 1.73603 * 119.96951 * 180.02562 * 18 17 16 20 20 C 1.38611 * 120.06174 * 0.02562 * 18 17 16 21 21 F 1.35100 * 120.00216 * 179.97438 * 20 18 17 22 22 C 1.38333 * 119.99475 * 0.02562 * 20 18 17 23 23 C 1.38703 * 120.00133 * 79.72066 * 16 15 14 24 24 O 1.35922 * 120.02712 * 359.97438 * 23 16 15 25 25 H 1.08999 * 109.47560 * 300.00221 * 1 2 3 26 26 H 1.08999 * 109.47221 * 60.00509 * 1 2 3 27 27 H 1.08998 * 109.47063 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47393 * 179.97438 * 3 2 1 29 29 H 1.09007 * 109.47151 * 299.99681 * 3 2 1 30 30 H 1.08999 * 109.47727 * 59.99368 * 3 2 1 31 31 H 1.08998 * 109.47393 * 179.97438 * 4 2 1 32 32 H 1.08998 * 109.47121 * 300.00170 * 4 2 1 33 33 H 0.96999 * 120.00380 * 179.97438 * 8 7 5 34 34 H 1.09001 * 109.47563 * 179.97438 * 13 2 1 35 35 H 1.08998 * 109.46791 * 60.00321 * 13 2 1 36 36 H 1.00893 * 110.99566 * 303.94674 * 14 13 2 37 37 H 1.08995 * 109.47466 * 59.99855 * 15 14 13 38 38 H 1.08999 * 109.47282 * 299.99304 * 15 14 13 39 39 H 1.08002 * 119.96882 * 359.97438 * 17 16 15 40 40 H 1.07998 * 120.02843 * 179.97438 * 22 20 18 41 41 H 0.96704 * 114.00042 * 90.00381 * 24 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 1.5378 -0.0110 -2.4796 6 1 0.9165 0.8669 -2.3806 7 6 1.8713 -0.4818 -3.7319 8 7 2.6275 -1.5511 -3.8525 9 14 1.2482 0.3983 -5.2572 10 1 1.7421 1.7987 -5.2572 11 1 1.7433 -0.3018 -6.4696 12 1 -0.2368 0.3972 -5.2573 13 6 2.0399 -0.7211 1.2494 14 7 1.5502 -0.0286 2.4487 15 6 2.0207 -0.6950 3.6704 16 6 1.4990 0.0417 4.8772 17 6 2.3182 0.9240 5.5555 18 6 1.8408 1.6012 6.6628 19 17 2.8719 2.7095 7.5126 20 6 0.5398 1.3958 7.0946 21 9 0.0748 2.0576 8.1768 22 6 -0.2821 0.5124 6.4181 23 6 0.1948 -0.1616 5.3036 24 8 -0.6132 -1.0247 4.6331 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9563 -0.8901 30 1 1.6766 1.9564 0.8899 31 1 3.1300 -0.7209 -1.2493 32 1 1.6767 -1.7490 -1.2490 33 1 2.8619 -1.8826 -4.7334 34 1 3.1299 -0.7215 1.2492 35 1 1.6766 -1.7488 1.2494 36 1 1.8196 0.9437 2.4401 37 1 3.1105 -0.6951 3.6875 38 1 1.6569 -1.7223 3.6871 39 1 3.3323 1.0849 5.2206 40 1 -1.2957 0.3517 6.7544 41 1 -0.5742 -1.9341 4.9594 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000816612595.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:06:55 Heat of formation + Delta-G solvation = -103.838456 kcal Electronic energy + Delta-G solvation = -23674.378665 eV Core-core repulsion = 19914.374495 eV Total energy + Delta-G solvation = -3760.004170 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.114 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -50.08931 -41.01674 -39.07363 -38.12896 -37.08641 -35.87914 -34.27104 -32.01024 -30.79422 -28.96147 -27.86115 -27.29558 -25.74354 -24.20005 -23.89602 -22.47058 -19.79809 -19.50105 -18.30529 -18.22079 -17.89101 -17.19794 -16.90092 -16.59315 -16.22232 -15.80651 -15.44834 -15.23662 -15.07626 -14.98412 -14.56227 -14.30407 -13.95951 -13.82996 -13.74679 -13.32500 -13.14884 -12.82374 -12.73386 -12.70619 -12.37506 -12.22003 -12.19227 -12.08689 -12.04463 -11.89493 -11.65912 -11.33708 -10.83084 -10.73238 -10.47706 -10.06769 -9.55802 -9.20843 -8.12182 -6.18602 -0.22476 -0.07458 0.92887 1.41998 1.43823 1.51077 2.16797 2.45307 2.80705 3.21787 3.27362 3.36547 3.62886 3.69491 4.01975 4.19022 4.24281 4.37446 4.42083 4.52607 4.62033 4.68076 4.80479 4.82212 4.84693 4.91646 5.01152 5.11541 5.24185 5.25401 5.26956 5.48508 5.55042 5.57796 5.61846 5.68961 5.90938 5.95787 6.11008 6.40169 6.53630 6.83542 6.96517 7.48489 8.99831 Molecular weight = 315.11amu Principal moments of inertia in cm(-1) A = 0.025123 B = 0.002521 C = 0.002440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.259471 B =11102.499094 C =11473.341869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.055 4.055 3 C -0.122 4.122 4 C 0.041 3.959 5 C -0.515 4.515 6 H 0.064 0.936 7 C -0.003 4.003 8 N -0.937 5.937 9 Si 0.953 3.047 10 H -0.268 1.268 11 H -0.288 1.288 12 H -0.270 1.270 13 C 0.085 3.915 14 N -0.676 5.676 15 C 0.106 3.894 16 C -0.109 4.109 17 C -0.056 4.056 18 C -0.094 4.094 19 Cl -0.053 7.053 20 C 0.115 3.885 21 F -0.132 7.132 22 C -0.174 4.174 23 C 0.173 3.827 24 O -0.488 6.488 25 H 0.064 0.936 26 H 0.034 0.966 27 H 0.030 0.970 28 H 0.038 0.962 29 H 0.043 0.957 30 H 0.064 0.936 31 H -0.014 1.014 32 H -0.014 1.014 33 H 0.259 0.741 34 H 0.022 0.978 35 H 0.061 0.939 36 H 0.341 0.659 37 H 0.050 0.950 38 H 0.089 0.911 39 H 0.160 0.840 40 H 0.165 0.835 41 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.360 3.466 25.155 25.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.055 4.055 3 C -0.180 4.180 4 C 0.003 3.997 5 C -0.553 4.553 6 H 0.082 0.918 7 C -0.200 4.200 8 N -0.579 5.579 9 Si 0.779 3.221 10 H -0.194 1.194 11 H -0.213 1.213 12 H -0.195 1.195 13 C -0.044 4.044 14 N -0.308 5.308 15 C -0.022 4.022 16 C -0.110 4.110 17 C -0.076 4.076 18 C -0.122 4.122 19 Cl -0.024 7.024 20 C 0.095 3.905 21 F -0.111 7.111 22 C -0.194 4.194 23 C 0.127 3.873 24 O -0.301 6.301 25 H 0.083 0.917 26 H 0.053 0.947 27 H 0.050 0.950 28 H 0.058 0.942 29 H 0.063 0.937 30 H 0.083 0.917 31 H 0.004 0.996 32 H 0.004 0.996 33 H 0.068 0.932 34 H 0.040 0.960 35 H 0.079 0.921 36 H 0.161 0.839 37 H 0.068 0.932 38 H 0.107 0.893 39 H 0.177 0.823 40 H 0.182 0.818 41 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges -2.967 3.626 24.820 25.258 hybrid contribution 0.950 0.165 -0.625 1.149 sum -2.016 3.791 24.195 24.574 Atomic orbital electron populations 1.21465 0.94481 1.00018 1.00152 1.20488 0.96122 0.95509 0.93420 1.21684 0.99532 0.95788 1.00965 1.18992 0.94011 0.94109 0.92545 1.21606 1.30156 1.11946 0.91587 0.91824 1.25882 0.95738 0.95904 1.02439 1.70090 1.38845 1.24869 1.24053 0.85680 0.78909 0.78834 0.78718 1.19353 1.21339 1.19463 1.21799 0.95968 0.97599 0.89020 1.60488 1.63659 1.06328 1.00289 1.20729 0.97464 0.98068 0.85966 1.20213 0.93246 0.99489 0.98071 1.20927 1.01350 0.93311 0.91965 1.20997 0.91554 1.00583 0.99070 1.98390 1.66422 1.60909 1.76662 1.17288 0.91454 0.95191 0.86561 1.91533 1.88736 1.78850 1.51942 1.21493 1.02066 0.99322 0.96490 1.18002 0.87928 0.92613 0.88747 1.84898 1.63422 1.23245 1.58554 0.91737 0.94694 0.95040 0.94244 0.93744 0.91681 0.99600 0.99606 0.93177 0.95979 0.92060 0.83930 0.93218 0.89257 0.82274 0.81770 0.72603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.93 8.06 71.98 0.58 -3.35 16 2 C -0.06 -2.12 0.60 -52.19 -0.03 -2.15 16 3 C -0.12 -4.33 7.89 71.98 0.57 -3.76 16 4 C 0.04 2.09 4.04 29.84 0.12 2.21 16 5 C -0.51 -28.33 7.65 25.60 0.20 -28.14 16 6 H 0.06 3.38 5.68 -2.91 -0.02 3.36 16 7 C 0.00 -0.16 5.46 84.66 0.46 0.30 16 8 N -0.94 -56.92 13.29 21.45 0.28 -56.64 16 9 Si 0.95 44.36 29.54 68.60 2.03 46.39 16 10 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 11 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 12 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 13 C 0.09 2.69 4.65 86.30 0.40 3.09 16 14 N -0.68 -16.76 5.70 -517.92 -2.95 -19.71 16 15 C 0.11 1.99 5.47 85.56 0.47 2.46 16 16 C -0.11 -1.85 5.41 -19.76 -0.11 -1.95 16 17 C -0.06 -0.90 9.44 22.27 0.21 -0.69 16 18 C -0.09 -1.69 6.33 22.37 0.14 -1.55 16 19 Cl -0.05 -0.94 28.61 -2.72 -0.08 -1.02 16 20 C 0.12 2.11 7.27 22.38 0.16 2.28 16 21 F -0.13 -2.64 16.83 44.97 0.76 -1.88 16 22 C -0.17 -2.79 9.96 22.40 0.22 -2.57 16 23 C 0.17 2.91 6.68 22.49 0.15 3.06 16 24 O -0.49 -7.90 12.74 -92.67 -1.18 -9.08 16 25 H 0.06 2.17 7.60 -2.39 -0.02 2.15 16 26 H 0.03 1.42 6.62 -2.39 -0.02 1.41 16 27 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 28 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.04 1.74 6.62 -2.38 -0.02 1.72 16 30 H 0.06 1.88 6.57 -2.39 -0.02 1.87 16 31 H -0.01 -0.80 8.14 -2.39 -0.02 -0.82 16 32 H -0.01 -0.81 8.14 -2.39 -0.02 -0.83 16 33 H 0.26 14.97 8.31 -92.71 -0.77 14.20 16 34 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 35 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 36 H 0.34 8.23 6.76 -89.70 -0.61 7.62 16 37 H 0.05 0.85 8.00 -2.39 -0.02 0.83 16 38 H 0.09 1.58 7.86 -2.39 -0.02 1.56 16 39 H 0.16 2.06 8.04 -2.91 -0.02 2.04 16 40 H 0.16 2.08 8.06 -2.91 -0.02 2.05 16 41 H 0.41 2.65 9.06 -74.05 -0.67 1.98 16 Total: -1.00 -65.82 354.97 2.19 -63.63 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: -0.21 Total: 9.10 kcal Atomic # 6 Polarization: -34.33 SS G_CDS: 3.55 Total: -30.78 kcal Atomic # 7 Polarization: -73.69 SS G_CDS: -2.67 Total: -76.35 kcal Atomic # 8 Polarization: -7.90 SS G_CDS: -1.18 Total: -9.08 kcal Atomic # 9 Polarization: -2.64 SS G_CDS: 0.76 Total: -1.88 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.39 kcal Atomic # 17 Polarization: -0.94 SS G_CDS: -0.08 Total: -1.02 kcal Total: -65.82 2.19 -63.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000816612595.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.208 kcal (2) G-P(sol) polarization free energy of solvation -65.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds