Wall clock time and date at job start Fri Apr 10 2020 23:06:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86802 * 119.99521 * 2 1 4 4 H 1.48507 * 109.46960 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47346 * 299.99654 * 3 2 1 6 6 H 1.48501 * 109.47369 * 59.99708 * 3 2 1 7 7 C 1.37871 * 120.00516 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00632 * 179.97438 * 7 2 1 9 9 C 1.50708 * 119.99534 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.46834 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.47385 * 179.97438 * 10 9 7 12 12 C 1.53001 * 109.47758 * 179.97438 * 11 10 9 13 13 C 1.50700 * 109.47467 * 179.97438 * 12 11 10 14 14 O 1.21278 * 119.99750 * 0.02562 * 13 12 11 15 15 N 1.34768 * 119.99851 * 180.02562 * 13 12 11 16 16 C 1.46506 * 119.99897 * 179.97438 * 15 13 12 17 17 C 1.50699 * 109.46987 * 179.97438 * 16 15 13 18 18 C 1.38431 * 119.99784 * 90.00365 * 17 16 15 19 19 F 1.35104 * 120.00081 * 0.02562 * 18 17 16 20 20 C 1.38431 * 120.00295 * 179.97438 * 18 17 16 21 21 C 1.38435 * 119.99826 * 0.02562 * 20 18 17 22 22 F 1.35095 * 120.00078 * 179.70019 * 21 20 18 23 23 C 1.38431 * 119.99882 * 359.97130 * 21 20 18 24 24 C 1.38431 * 120.00291 * 0.02870 * 23 21 20 25 25 F 1.35099 * 120.00534 * 179.97438 * 24 23 21 26 26 H 0.97010 * 120.00574 * 0.02562 * 1 2 3 27 27 H 1.08990 * 109.47552 * 59.99580 * 9 7 2 28 28 H 1.09007 * 109.46645 * 299.99122 * 9 7 2 29 29 H 1.09002 * 109.47512 * 59.99221 * 10 9 7 30 30 H 1.09007 * 109.47440 * 299.99265 * 10 9 7 31 31 H 1.09002 * 109.47179 * 59.99326 * 11 10 9 32 32 H 1.09003 * 109.47312 * 299.99801 * 11 10 9 33 33 H 1.09007 * 109.46669 * 59.99835 * 12 11 10 34 34 H 1.08999 * 109.46923 * 299.99960 * 12 11 10 35 35 H 0.97001 * 120.00183 * 0.02562 * 15 13 12 36 36 H 1.09007 * 109.47064 * 60.00274 * 16 15 13 37 37 H 1.08999 * 109.47217 * 299.99977 * 16 15 13 38 38 H 1.08000 * 120.00742 * 179.97438 * 20 18 17 39 39 H 1.08001 * 120.00254 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8901 2.3966 1.2125 7 6 2.0046 -1.1939 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6619 0.0005 11 6 1.4805 -4.9870 0.0012 12 6 2.4747 -6.1499 0.0005 13 6 1.7213 -7.4551 0.0018 14 8 0.5085 -7.4551 0.0026 15 7 2.3952 -8.6221 0.0020 16 6 1.6628 -9.8910 0.0038 17 6 2.6422 -11.0363 0.0031 18 6 3.0937 -11.5617 1.2016 19 9 2.6559 -11.0480 2.3720 20 6 3.9929 -12.6141 1.2010 21 6 4.4411 -13.1409 0.0018 22 9 5.3233 -14.1640 0.0012 23 6 3.9896 -12.6156 -1.1967 24 6 3.0903 -11.5631 -1.1961 25 9 2.6500 -11.0501 -2.3658 26 1 -0.4851 0.8401 -0.0004 27 1 0.6247 -2.5571 -0.8895 28 1 0.6241 -2.5566 0.8905 29 1 2.8721 -3.6041 0.8904 30 1 2.8719 -3.6043 -0.8895 31 1 0.8534 -5.0450 -0.8885 32 1 0.8541 -5.0446 0.8914 33 1 3.1020 -6.0920 0.8901 34 1 3.1007 -6.0922 -0.8899 35 1 3.3652 -8.6221 0.0017 36 1 1.0352 -9.9495 -0.8855 37 1 1.0371 -9.9480 0.8945 38 1 4.3455 -13.0238 2.1360 39 1 4.3395 -13.0262 -2.1323 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000818521695.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:06:57 Heat of formation + Delta-G solvation = -171.482727 kcal Electronic energy + Delta-G solvation = -24578.204252 eV Core-core repulsion = 20263.470126 eV Total energy + Delta-G solvation = -4314.734125 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.119 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.78466 -49.72795 -49.72075 -39.96064 -39.17290 -35.42184 -34.76215 -32.64562 -31.77661 -31.29227 -29.70418 -26.90530 -25.23372 -23.95564 -22.86091 -22.06293 -20.39968 -19.95546 -19.27832 -18.64143 -17.36396 -17.08312 -16.64082 -16.62198 -16.38504 -16.10737 -16.00426 -15.97061 -15.75054 -15.59066 -15.03486 -14.63307 -14.41051 -14.34353 -13.63665 -13.27675 -12.96432 -12.65759 -12.56953 -12.42033 -12.26168 -12.04852 -11.67979 -11.57453 -10.98253 -10.52333 -10.47324 -10.39631 -10.03555 -9.65805 -9.59739 -9.50558 -9.29608 -9.18880 -8.94977 -8.29243 -5.93741 -3.96140 -0.04079 0.07796 2.31818 2.69040 2.80499 3.16331 3.34190 3.41331 3.45310 3.47332 3.48040 3.75724 3.83320 4.05498 4.50255 4.78390 4.80887 4.91104 4.98955 5.01951 5.07888 5.30670 5.32236 5.36903 5.39890 5.41947 5.86327 5.90307 6.14968 6.15664 6.32148 6.56528 6.85994 7.03887 7.21688 7.34035 7.76267 7.92159 8.07858 8.20202 8.49684 9.11829 9.67463 11.17570 Molecular weight = 315.12amu Principal moments of inertia in cm(-1) A = 0.028890 B = 0.001905 C = 0.001900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.950771 B =14694.496106 C =14729.626074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.054 3.946 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.519 4.519 8 H 0.055 0.945 9 C 0.019 3.981 10 C -0.110 4.110 11 C -0.104 4.104 12 C -0.138 4.138 13 C 0.515 3.485 14 O -0.531 6.531 15 N -0.736 5.736 16 C 0.163 3.837 17 C -0.192 4.192 18 C 0.182 3.818 19 F -0.112 7.112 20 C -0.204 4.204 21 C 0.171 3.829 22 F -0.119 7.119 23 C -0.204 4.204 24 C 0.182 3.818 25 F -0.112 7.112 26 H 0.259 0.741 27 H 0.016 0.984 28 H 0.016 0.984 29 H 0.046 0.954 30 H 0.047 0.953 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.400 0.600 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.159 0.841 39 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.728 -32.004 0.006 33.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.147 4.147 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.557 4.557 8 H 0.073 0.927 9 C -0.018 4.018 10 C -0.148 4.148 11 C -0.142 4.142 12 C -0.177 4.177 13 C 0.303 3.697 14 O -0.406 6.406 15 N -0.390 5.390 16 C 0.040 3.960 17 C -0.194 4.194 18 C 0.162 3.838 19 F -0.090 7.090 20 C -0.224 4.224 21 C 0.151 3.849 22 F -0.097 7.097 23 C -0.224 4.224 24 C 0.162 3.838 25 F -0.090 7.090 26 H 0.069 0.931 27 H 0.034 0.966 28 H 0.034 0.966 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.110 0.890 34 H 0.110 0.890 35 H 0.234 0.766 36 H 0.105 0.895 37 H 0.105 0.895 38 H 0.177 0.823 39 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 9.661 -31.867 0.006 33.299 hybrid contribution 0.979 0.766 -0.001 1.243 sum 10.640 -31.101 0.005 32.871 Atomic orbital electron populations 1.69985 1.06037 1.26377 1.51054 1.25048 0.94849 0.99248 0.95513 0.86557 0.80074 0.83941 0.77528 1.19790 1.21072 1.21064 1.21321 0.93014 0.91190 1.50208 0.92705 1.19106 0.94080 0.91288 0.97338 1.21649 0.99078 0.93984 1.00078 1.21460 0.97015 0.92665 1.03015 1.21801 1.00128 0.91720 1.04092 1.21144 0.88473 0.85338 0.74792 1.90718 1.14179 1.87521 1.48230 1.46119 1.10224 1.04923 1.77729 1.19936 0.91875 0.79621 1.04588 1.19996 1.05111 1.03038 0.91263 1.16723 0.93744 0.92414 0.80928 1.91620 1.87352 1.85399 1.44650 1.21114 1.02119 0.99599 0.99581 1.16820 0.89243 0.86170 0.92690 1.91593 1.65236 1.55671 1.97249 1.21113 1.02094 0.99615 0.99592 1.16722 0.93726 0.92419 0.80938 1.91618 1.87268 1.85420 1.44711 0.93111 0.96572 0.96563 0.93472 0.93467 0.91760 0.91753 0.89039 0.89030 0.76557 0.89528 0.89524 0.82293 0.82294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.67 13.29 55.43 0.74 -26.93 16 2 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 22.02 29.54 -169.99 -5.02 16.99 16 4 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 7 C -0.52 -15.05 9.11 -34.44 -0.31 -15.36 16 8 H 0.05 1.53 7.74 -52.49 -0.41 1.13 16 9 C 0.02 0.51 4.97 -27.88 -0.14 0.37 16 10 C -0.11 -2.28 5.15 -26.74 -0.14 -2.42 16 11 C -0.10 -1.86 4.50 -26.73 -0.12 -1.98 16 12 C -0.14 -1.81 5.70 -27.88 -0.16 -1.97 16 13 C 0.51 7.09 7.83 -10.99 -0.09 7.00 16 14 O -0.53 -9.60 15.98 5.56 0.09 -9.51 16 15 N -0.74 -7.34 5.55 -61.47 -0.34 -7.68 16 16 C 0.16 1.52 5.44 -5.19 -0.03 1.49 16 17 C -0.19 -1.35 5.26 -104.48 -0.55 -1.90 16 18 C 0.18 1.18 7.24 -39.44 -0.29 0.90 16 19 F -0.11 -0.89 16.47 2.25 0.04 -0.85 16 20 C -0.20 -1.03 10.00 -39.44 -0.39 -1.42 16 21 C 0.17 0.88 7.30 -39.44 -0.29 0.59 16 22 F -0.12 -0.69 17.27 2.25 0.04 -0.65 16 23 C -0.20 -1.03 10.00 -39.44 -0.39 -1.42 16 24 C 0.18 1.18 7.24 -39.44 -0.29 0.90 16 25 F -0.11 -0.89 16.47 2.25 0.04 -0.85 16 26 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 27 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.02 0.46 8.14 -51.92 -0.42 0.03 16 29 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 31 H 0.06 1.23 8.10 -51.93 -0.42 0.81 16 32 H 0.06 1.23 8.10 -51.93 -0.42 0.81 16 33 H 0.09 1.04 8.14 -51.92 -0.42 0.61 16 34 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 35 H 0.40 2.94 8.46 -40.82 -0.35 2.59 16 36 H 0.09 0.87 7.64 -51.92 -0.40 0.47 16 37 H 0.09 0.87 7.64 -51.93 -0.40 0.47 16 38 H 0.16 0.53 8.06 -52.49 -0.42 0.11 16 39 H 0.16 0.53 8.06 -52.49 -0.42 0.11 16 LS Contribution 352.06 15.07 5.31 5.31 Total: -1.00 -33.85 352.06 -7.30 -41.15 By element: Atomic # 1 Polarization: 1.65 SS G_CDS: -4.90 Total: -3.26 kcal Atomic # 6 Polarization: -10.45 SS G_CDS: -3.28 Total: -13.73 kcal Atomic # 7 Polarization: -35.00 SS G_CDS: 0.40 Total: -34.61 kcal Atomic # 8 Polarization: -9.60 SS G_CDS: 0.09 Total: -9.51 kcal Atomic # 9 Polarization: -2.47 SS G_CDS: 0.11 Total: -2.36 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -33.85 -7.30 -41.15 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000818521695.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.330 kcal (2) G-P(sol) polarization free energy of solvation -33.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds