Wall clock time and date at job start Fri Apr 10 2020 23:06:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86802 * 119.99521 * 2 1 4 4 H 1.48507 * 109.46960 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47346 * 299.99654 * 3 2 1 6 6 H 1.48501 * 109.47369 * 59.99708 * 3 2 1 7 7 C 1.37871 * 120.00516 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00632 * 179.97438 * 7 2 1 9 9 C 1.50708 * 119.99534 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.46834 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.47385 * 179.97438 * 10 9 7 12 12 C 1.53001 * 109.47758 * 179.97438 * 11 10 9 13 13 C 1.50700 * 109.47467 * 179.97438 * 12 11 10 14 14 O 1.21278 * 119.99750 * 0.02562 * 13 12 11 15 15 N 1.34768 * 119.99851 * 180.02562 * 13 12 11 16 16 C 1.46506 * 119.99897 * 179.97438 * 15 13 12 17 17 C 1.50699 * 109.46987 * 179.97438 * 16 15 13 18 18 C 1.38431 * 119.99784 * 90.00365 * 17 16 15 19 19 F 1.35104 * 120.00081 * 0.02562 * 18 17 16 20 20 C 1.38431 * 120.00295 * 179.97438 * 18 17 16 21 21 C 1.38435 * 119.99826 * 0.02562 * 20 18 17 22 22 F 1.35095 * 120.00078 * 179.70019 * 21 20 18 23 23 C 1.38431 * 119.99882 * 359.97130 * 21 20 18 24 24 C 1.38431 * 120.00291 * 0.02870 * 23 21 20 25 25 F 1.35099 * 120.00534 * 179.97438 * 24 23 21 26 26 H 0.97010 * 120.00574 * 0.02562 * 1 2 3 27 27 H 1.08990 * 109.47552 * 59.99580 * 9 7 2 28 28 H 1.09007 * 109.46645 * 299.99122 * 9 7 2 29 29 H 1.09002 * 109.47512 * 59.99221 * 10 9 7 30 30 H 1.09007 * 109.47440 * 299.99265 * 10 9 7 31 31 H 1.09002 * 109.47179 * 59.99326 * 11 10 9 32 32 H 1.09003 * 109.47312 * 299.99801 * 11 10 9 33 33 H 1.09007 * 109.46669 * 59.99835 * 12 11 10 34 34 H 1.08999 * 109.46923 * 299.99960 * 12 11 10 35 35 H 0.97001 * 120.00183 * 0.02562 * 15 13 12 36 36 H 1.09007 * 109.47064 * 60.00274 * 16 15 13 37 37 H 1.08999 * 109.47217 * 299.99977 * 16 15 13 38 38 H 1.08000 * 120.00742 * 179.97438 * 20 18 17 39 39 H 1.08001 * 120.00254 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8901 2.3966 1.2125 7 6 2.0046 -1.1939 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6619 0.0005 11 6 1.4805 -4.9870 0.0012 12 6 2.4747 -6.1499 0.0005 13 6 1.7213 -7.4551 0.0018 14 8 0.5085 -7.4551 0.0026 15 7 2.3952 -8.6221 0.0020 16 6 1.6628 -9.8910 0.0038 17 6 2.6422 -11.0363 0.0031 18 6 3.0937 -11.5617 1.2016 19 9 2.6559 -11.0480 2.3720 20 6 3.9929 -12.6141 1.2010 21 6 4.4411 -13.1409 0.0018 22 9 5.3233 -14.1640 0.0012 23 6 3.9896 -12.6156 -1.1967 24 6 3.0903 -11.5631 -1.1961 25 9 2.6500 -11.0501 -2.3658 26 1 -0.4851 0.8401 -0.0004 27 1 0.6247 -2.5571 -0.8895 28 1 0.6241 -2.5566 0.8905 29 1 2.8721 -3.6041 0.8904 30 1 2.8719 -3.6043 -0.8895 31 1 0.8534 -5.0450 -0.8885 32 1 0.8541 -5.0446 0.8914 33 1 3.1020 -6.0920 0.8901 34 1 3.1007 -6.0922 -0.8899 35 1 3.3652 -8.6221 0.0017 36 1 1.0352 -9.9495 -0.8855 37 1 1.0371 -9.9480 0.8945 38 1 4.3455 -13.0238 2.1360 39 1 4.3395 -13.0262 -2.1323 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000818521695.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:06:57 Heat of formation + Delta-G solvation = -191.985054 kcal Electronic energy + Delta-G solvation = -24579.093300 eV Core-core repulsion = 20263.470126 eV Total energy + Delta-G solvation = -4315.623173 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.119 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -50.27622 -50.27412 -50.20779 -40.92051 -39.81980 -36.74524 -36.07175 -34.60816 -32.62115 -31.73841 -31.30055 -28.08713 -26.67979 -24.42194 -24.18098 -23.04334 -21.82313 -21.36973 -19.77307 -19.14536 -18.42874 -18.25843 -17.68175 -17.17137 -17.14468 -17.03462 -16.90391 -16.54783 -16.52516 -16.49020 -16.24845 -15.72009 -15.44094 -15.29446 -14.73363 -14.53899 -14.36348 -13.62952 -13.58114 -13.42426 -13.32314 -12.99942 -12.96577 -12.83184 -12.78710 -12.30831 -12.14566 -12.13101 -11.36909 -11.36552 -11.17844 -10.90101 -10.55243 -10.24873 -10.10523 -10.03399 -8.18238 -6.30300 -0.52807 -0.36475 1.40700 1.41701 1.55173 1.60957 1.80518 2.29147 2.35122 2.42605 2.98056 3.01812 3.14416 3.17882 3.35251 3.67919 3.82233 4.06121 4.15229 4.22652 4.39588 4.47210 4.52999 4.57025 4.61745 4.69659 4.69666 4.82541 4.85082 4.89215 5.20322 5.24618 5.34245 5.40515 5.45311 5.58228 5.79234 5.89029 6.25999 6.45246 6.88442 7.19714 7.39255 8.94146 Molecular weight = 315.12amu Principal moments of inertia in cm(-1) A = 0.028890 B = 0.001905 C = 0.001900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.950771 B =14694.496106 C =14729.626074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.009 4.009 3 Si 0.970 3.030 4 H -0.257 1.257 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.540 4.540 8 H 0.066 0.934 9 C 0.017 3.983 10 C -0.096 4.096 11 C -0.097 4.097 12 C -0.127 4.127 13 C 0.515 3.485 14 O -0.584 6.584 15 N -0.717 5.717 16 C 0.163 3.837 17 C -0.192 4.192 18 C 0.175 3.825 19 F -0.123 7.123 20 C -0.191 4.191 21 C 0.173 3.827 22 F -0.120 7.120 23 C -0.191 4.191 24 C 0.175 3.825 25 F -0.123 7.123 26 H 0.263 0.737 27 H -0.015 1.015 28 H -0.015 1.015 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.043 0.957 32 H 0.043 0.957 33 H 0.120 0.880 34 H 0.120 0.880 35 H 0.416 0.584 36 H 0.076 0.924 37 H 0.077 0.923 38 H 0.178 0.822 39 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.851 -32.993 0.006 35.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.206 4.206 3 Si 0.794 3.206 4 H -0.181 1.181 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.578 4.578 8 H 0.084 0.916 9 C -0.020 4.020 10 C -0.133 4.133 11 C -0.135 4.135 12 C -0.167 4.167 13 C 0.303 3.697 14 O -0.463 6.463 15 N -0.370 5.370 16 C 0.040 3.960 17 C -0.194 4.194 18 C 0.155 3.845 19 F -0.101 7.101 20 C -0.210 4.210 21 C 0.153 3.847 22 F -0.098 7.098 23 C -0.210 4.210 24 C 0.155 3.845 25 F -0.101 7.101 26 H 0.071 0.929 27 H 0.003 0.997 28 H 0.003 0.997 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.138 0.862 34 H 0.138 0.862 35 H 0.253 0.747 36 H 0.095 0.905 37 H 0.095 0.905 38 H 0.196 0.804 39 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 12.843 -32.897 0.006 35.315 hybrid contribution -0.004 0.980 -0.001 0.980 sum 12.840 -31.916 0.005 34.402 Atomic orbital electron populations 1.70140 1.08054 1.27664 1.51984 1.26107 0.95813 1.03786 0.94867 0.85324 0.79197 0.78392 0.77656 1.18067 1.20504 1.20491 1.21784 0.93752 0.92202 1.50030 0.91554 1.19073 0.94731 0.93835 0.94344 1.21448 0.97811 0.92706 1.01356 1.21253 0.97506 0.93609 1.01107 1.21680 0.98962 0.89195 1.06833 1.21223 0.87785 0.86465 0.74222 1.90707 1.16379 1.88254 1.50980 1.45928 1.11033 1.04272 1.75802 1.19870 0.92432 0.80069 1.03647 1.19760 1.05129 1.02603 0.91958 1.16747 0.94410 0.93062 0.80273 1.91597 1.87631 1.85688 1.45188 1.21252 1.00862 0.98473 1.00453 1.16814 0.89097 0.86033 0.92711 1.91602 1.65253 1.55703 1.97242 1.21251 1.00835 0.98490 1.00465 1.16747 0.94393 0.93067 0.80283 1.91595 1.87548 1.85709 1.45249 0.92875 0.99691 0.99685 0.92035 0.92029 0.93810 0.93802 0.86213 0.86205 0.74652 0.90531 0.90524 0.80446 0.80447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.39 13.29 21.44 0.28 -59.10 16 2 C -0.01 -0.52 5.46 84.65 0.46 -0.05 16 3 Si 0.97 45.07 29.54 68.60 2.03 47.09 16 4 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 5 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 6 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 7 C -0.54 -31.48 9.11 25.60 0.23 -31.25 16 8 H 0.07 3.63 7.74 -2.91 -0.02 3.61 16 9 C 0.02 0.96 4.97 29.85 0.15 1.11 16 10 C -0.10 -3.92 5.15 30.59 0.16 -3.76 16 11 C -0.10 -3.50 4.50 30.59 0.14 -3.36 16 12 C -0.13 -3.11 5.70 29.85 0.17 -2.94 16 13 C 0.51 13.90 7.83 87.66 0.69 14.58 16 14 O -0.58 -21.76 15.98 -3.02 -0.05 -21.81 16 15 N -0.72 -13.48 5.55 -466.78 -2.59 -16.07 16 16 C 0.16 3.00 5.44 85.63 0.47 3.47 16 17 C -0.19 -2.48 5.26 -19.77 -0.10 -2.59 16 18 C 0.18 2.00 7.24 22.36 0.16 2.16 16 19 F -0.12 -1.83 16.47 44.97 0.74 -1.09 16 20 C -0.19 -1.46 10.00 22.36 0.22 -1.23 16 21 C 0.17 1.34 7.30 22.36 0.16 1.50 16 22 F -0.12 -1.06 17.27 44.97 0.78 -0.28 16 23 C -0.19 -1.46 10.00 22.36 0.22 -1.23 16 24 C 0.18 2.00 7.24 22.36 0.16 2.16 16 25 F -0.12 -1.83 16.47 44.97 0.74 -1.09 16 26 H 0.26 15.52 8.31 -92.70 -0.77 14.75 16 27 H -0.02 -0.93 8.14 -2.39 -0.02 -0.95 16 28 H -0.02 -0.93 8.14 -2.38 -0.02 -0.94 16 29 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 30 H 0.06 2.35 8.14 -2.38 -0.02 2.33 16 31 H 0.04 1.74 8.10 -2.39 -0.02 1.72 16 32 H 0.04 1.74 8.10 -2.39 -0.02 1.72 16 33 H 0.12 2.31 8.14 -2.38 -0.02 2.29 16 34 H 0.12 2.31 8.14 -2.39 -0.02 2.29 16 35 H 0.42 5.15 8.46 -92.71 -0.78 4.37 16 36 H 0.08 1.58 7.64 -2.38 -0.02 1.56 16 37 H 0.08 1.58 7.64 -2.39 -0.02 1.56 16 38 H 0.18 0.68 8.06 -2.91 -0.02 0.65 16 39 H 0.18 0.68 8.06 -2.91 -0.02 0.65 16 Total: -1.00 -75.72 352.06 5.53 -70.20 By element: Atomic # 1 Polarization: 3.28 SS G_CDS: 0.30 Total: 3.58 kcal Atomic # 6 Polarization: -24.73 SS G_CDS: 3.29 Total: -21.44 kcal Atomic # 7 Polarization: -72.87 SS G_CDS: -2.30 Total: -75.17 kcal Atomic # 8 Polarization: -21.76 SS G_CDS: -0.05 Total: -21.81 kcal Atomic # 9 Polarization: -4.72 SS G_CDS: 2.26 Total: -2.46 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.09 kcal Total: -75.72 5.53 -70.20 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000818521695.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.789 kcal (2) G-P(sol) polarization free energy of solvation -75.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -197.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -191.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds