Wall clock time and date at job start Fri Apr 10 2020 23:06:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31554 * 1 3 3 Si 1.86795 * 120.00037 * 2 1 4 4 H 1.48496 * 109.47582 * 240.00084 * 3 2 1 5 5 H 1.48506 * 109.47231 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.47100 * 119.99896 * 3 2 1 7 7 C 1.38649 * 120.00161 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00215 * 179.97438 * 7 2 1 9 9 O 1.34834 * 119.99961 * 359.97438 * 7 2 1 10 10 C 1.35752 * 117.00023 * 174.59893 * 9 7 2 11 11 C 1.38954 * 120.02912 * 173.82368 * 10 9 7 12 12 C 1.38126 * 120.06511 * 179.71502 * 11 10 9 13 13 C 1.38206 * 120.13712 * 0.55675 * 12 11 10 14 14 C 1.38918 * 120.06796 * 359.71621 * 13 12 11 15 15 N 1.39948 * 120.03534 * 180.02562 * 14 13 12 16 16 C 1.34773 * 120.00173 * 326.33923 * 15 14 13 17 17 O 1.21591 * 119.99993 * 354.73754 * 16 15 14 18 18 N 1.34780 * 120.00018 * 174.73011 * 16 15 14 19 19 C 1.46493 * 119.99752 * 180.02562 * 18 16 15 20 20 C 1.53001 * 109.47038 * 180.02562 * 19 18 16 21 21 F 1.39902 * 109.46918 * 299.99913 * 20 19 18 22 22 F 1.39899 * 109.46982 * 59.99673 * 20 19 18 23 23 C 1.53000 * 109.47301 * 180.02562 * 20 19 18 24 24 N 1.46898 * 109.47087 * 179.97438 * 23 20 19 25 25 C 1.38729 * 120.03317 * 354.08934 * 10 9 7 26 26 H 0.97008 * 119.99966 * 0.02562 * 1 2 3 27 27 H 1.07997 * 119.96618 * 359.96966 * 11 10 9 28 28 H 1.08001 * 119.93332 * 180.27252 * 12 11 10 29 29 H 1.08001 * 119.96758 * 179.74148 * 13 12 11 30 30 H 0.97003 * 119.99302 * 146.33699 * 15 14 13 31 31 H 0.97003 * 119.99703 * 0.02562 * 18 16 15 32 32 H 1.09005 * 109.47586 * 299.99949 * 19 18 16 33 33 H 1.08997 * 109.47586 * 60.00395 * 19 18 16 34 34 H 1.09003 * 109.46852 * 299.99555 * 23 20 19 35 35 H 1.08991 * 109.47094 * 59.99846 * 23 20 19 36 36 H 1.00903 * 111.00021 * 56.04701 * 24 23 20 37 37 H 1.00899 * 111.00296 * 179.97438 * 24 23 20 38 38 H 1.08004 * 120.07097 * 359.97438 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 3.1033 1.6965 -1.2124 5 1 1.2845 2.7465 0.0006 6 1 3.1033 1.6964 1.2126 7 6 2.0088 -1.2007 -0.0005 8 1 3.0888 -1.2007 -0.0010 9 8 1.3347 -2.3684 -0.0005 10 6 2.0694 -3.5042 -0.1149 11 6 1.4553 -4.7448 0.0067 12 6 2.2011 -5.9010 -0.1154 13 6 3.5616 -5.8279 -0.3474 14 6 4.1822 -4.5906 -0.4643 15 7 5.5598 -4.5173 -0.6997 16 6 6.3834 -5.4464 -0.1754 17 8 5.9437 -6.2921 0.5796 18 7 7.6944 -5.4383 -0.4880 19 6 8.5895 -6.4485 0.0815 20 6 10.0126 -6.2155 -0.4298 21 9 10.0283 -6.3120 -1.8254 22 9 10.4432 -4.9410 -0.0457 23 6 10.9473 -7.2709 0.1644 24 7 12.3135 -7.0475 -0.3270 25 6 3.4348 -3.4274 -0.3479 26 1 -0.4850 0.8401 -0.0004 27 1 0.3932 -4.8050 0.1928 28 1 1.7209 -6.8641 -0.0249 29 1 4.1428 -6.7336 -0.4382 30 1 5.9218 -3.7978 -1.2403 31 1 8.0452 -4.7634 -1.0901 32 1 8.5776 -6.3730 1.1689 33 1 8.2537 -7.4414 -0.2175 34 1 10.9352 -7.1961 1.2518 35 1 10.6116 -8.2636 -0.1352 36 1 12.6242 -6.1105 -0.1182 37 1 12.9506 -7.7321 0.0518 38 1 3.9149 -2.4643 -0.4389 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000841049108.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:06:59 Heat of formation + Delta-G solvation = -122.968497 kcal Electronic energy + Delta-G solvation = -25423.220780 eV Core-core repulsion = 21130.510351 eV Total energy + Delta-G solvation = -4292.710429 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.118 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.41596 -47.38495 -40.42765 -38.78662 -36.72558 -35.76268 -34.73441 -34.25321 -32.23301 -30.52140 -29.17884 -28.35210 -25.53883 -25.18050 -22.38344 -22.06854 -21.79579 -20.50668 -18.90274 -18.19999 -17.94029 -17.71449 -17.33262 -16.77313 -15.71208 -15.67009 -15.45443 -15.11138 -14.97256 -14.78278 -14.43324 -14.30156 -14.07560 -13.98101 -13.74652 -13.57780 -13.46822 -13.23790 -12.96880 -12.58955 -12.34832 -11.74616 -11.60324 -11.44607 -11.14919 -11.02777 -10.74977 -10.45219 -10.16813 -9.67963 -9.51122 -9.48831 -9.42005 -8.79579 -7.71702 -7.13931 -6.44229 -4.03982 2.03407 2.34830 2.43679 3.09379 3.12023 3.12723 3.16352 3.21162 3.52269 3.65071 3.85826 3.96453 4.15080 4.28954 4.60594 4.65212 4.85099 5.07689 5.11432 5.18136 5.28691 5.68501 5.96303 6.03905 6.07721 6.23892 6.24645 6.27108 6.49936 6.67074 6.74690 6.99985 7.09563 7.22596 7.33141 7.43463 7.82342 7.90708 8.00147 8.50748 9.01102 9.71594 10.73730 Molecular weight = 315.12amu Principal moments of inertia in cm(-1) A = 0.017740 B = 0.002737 C = 0.002423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.019149 B =10226.515646 C =11553.844375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.862 5.862 2 C 0.040 3.960 3 Si 0.940 3.060 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.270 1.270 7 C -0.392 4.392 8 H 0.089 0.911 9 O -0.176 6.176 10 C 0.169 3.831 11 C -0.201 4.201 12 C -0.063 4.063 13 C -0.205 4.205 14 C 0.197 3.803 15 N -0.678 5.678 16 C 0.708 3.292 17 O -0.568 6.568 18 N -0.746 5.746 19 C 0.103 3.897 20 C 0.285 3.715 21 F -0.184 7.184 22 F -0.196 7.196 23 C 0.024 3.976 24 N -0.844 5.844 25 C -0.257 4.257 26 H 0.270 0.730 27 H 0.118 0.882 28 H 0.116 0.884 29 H 0.120 0.880 30 H 0.404 0.596 31 H 0.402 0.598 32 H 0.098 0.902 33 H 0.100 0.900 34 H 0.065 0.935 35 H 0.108 0.892 36 H 0.349 0.651 37 H 0.355 0.645 38 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.788 -12.101 -0.772 24.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.497 5.497 2 C -0.165 4.165 3 Si 0.765 3.235 4 H -0.196 1.196 5 H -0.203 1.203 6 H -0.196 1.196 7 C -0.468 4.468 8 H 0.107 0.893 9 O -0.079 6.079 10 C 0.114 3.886 11 C -0.221 4.221 12 C -0.082 4.082 13 C -0.226 4.226 14 C 0.104 3.896 15 N -0.325 5.325 16 C 0.409 3.591 17 O -0.444 6.444 18 N -0.404 5.404 19 C -0.024 4.024 20 C 0.248 3.752 21 F -0.165 7.165 22 F -0.177 7.177 23 C -0.109 4.109 24 N -0.376 5.376 25 C -0.279 4.279 26 H 0.080 0.920 27 H 0.136 0.864 28 H 0.134 0.866 29 H 0.137 0.863 30 H 0.239 0.761 31 H 0.236 0.764 32 H 0.116 0.884 33 H 0.118 0.882 34 H 0.083 0.917 35 H 0.127 0.873 36 H 0.163 0.837 37 H 0.169 0.831 38 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 20.694 -12.792 -0.799 24.341 hybrid contribution 1.276 1.865 0.341 2.286 sum 21.970 -10.926 -0.457 24.541 Atomic orbital electron populations 1.70027 1.05918 1.27738 1.46046 1.25266 0.95832 0.98767 0.96599 0.85804 0.78719 0.79923 0.79098 1.19568 1.20274 1.19564 1.21216 0.91625 0.80907 1.53089 0.89332 1.84021 1.33867 1.11354 1.78680 1.19067 0.89445 0.88126 0.91919 1.20249 1.00157 0.89991 1.11653 1.20523 0.93067 0.96935 0.97632 1.20553 0.94568 0.95884 1.11588 1.17171 0.79888 0.93987 0.98556 1.42537 1.05871 1.29625 1.54466 1.15750 0.80309 0.82377 0.80682 1.90963 1.75108 1.39488 1.38809 1.44779 1.07177 1.35073 1.53335 1.22126 0.85241 0.94372 1.00614 1.21428 0.95063 0.81231 0.77495 1.93071 1.97358 1.96078 1.29984 1.93033 1.91223 1.42565 1.90858 1.22687 0.90286 0.99138 0.98764 1.58543 1.02312 1.09545 1.67171 1.20779 0.94801 0.97152 1.15172 0.91977 0.86369 0.86605 0.86251 0.76114 0.76388 0.88371 0.88152 0.91701 0.87343 0.83714 0.83115 0.85265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.20 13.67 55.48 0.76 -24.45 16 2 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 3 Si 0.94 20.37 29.55 -169.99 -5.02 15.35 16 4 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 5 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 6 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 7 C -0.39 -10.88 9.44 30.88 0.29 -10.59 16 8 H 0.09 2.26 5.30 -52.49 -0.28 1.99 16 9 O -0.18 -5.00 9.76 0.03 0.00 -5.00 16 10 C 0.17 4.10 6.64 -39.14 -0.26 3.84 16 11 C -0.20 -4.32 9.99 -39.36 -0.39 -4.71 16 12 C -0.06 -1.19 10.03 -39.63 -0.40 -1.58 16 13 C -0.20 -3.96 8.65 -39.34 -0.34 -4.30 16 14 C 0.20 3.81 6.27 -83.71 -0.52 3.29 16 15 N -0.68 -10.39 5.35 -14.24 -0.08 -10.47 16 16 C 0.71 10.63 8.30 -86.92 -0.72 9.90 16 17 O -0.57 -10.44 14.05 5.29 0.07 -10.36 16 18 N -0.75 -8.04 5.42 -65.23 -0.35 -8.39 16 19 C 0.10 0.88 5.19 -4.05 -0.02 0.86 16 20 C 0.29 2.17 1.72 -26.73 -0.05 2.12 16 21 F -0.18 -1.80 16.84 2.25 0.04 -1.76 16 22 F -0.20 -1.74 16.40 2.25 0.04 -1.70 16 23 C 0.02 0.12 6.33 -3.83 -0.02 0.10 16 24 N -0.84 -4.48 9.55 -10.37 -0.10 -4.58 16 25 C -0.26 -5.59 9.04 -39.21 -0.35 -5.94 16 26 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 27 H 0.12 2.43 8.06 -52.49 -0.42 2.00 16 28 H 0.12 1.82 8.06 -52.49 -0.42 1.40 16 29 H 0.12 2.26 6.43 -52.49 -0.34 1.92 16 30 H 0.40 4.92 8.83 -40.82 -0.36 4.56 16 31 H 0.40 3.63 8.38 -40.82 -0.34 3.29 16 32 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.10 0.81 8.14 -51.93 -0.42 0.38 16 34 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 35 H 0.11 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.35 1.79 8.52 -39.29 -0.33 1.45 16 37 H 0.35 1.08 9.08 -39.29 -0.36 0.72 16 38 H 0.13 2.75 5.71 -52.48 -0.30 2.45 16 LS Contribution 338.25 15.07 5.10 5.10 Total: -1.00 -34.64 338.25 -6.42 -41.06 By element: Atomic # 1 Polarization: 15.24 SS G_CDS: -3.98 Total: 11.26 kcal Atomic # 6 Polarization: -3.15 SS G_CDS: -2.89 Total: -6.04 kcal Atomic # 7 Polarization: -48.12 SS G_CDS: 0.23 Total: -47.89 kcal Atomic # 8 Polarization: -15.44 SS G_CDS: 0.07 Total: -15.37 kcal Atomic # 9 Polarization: -3.54 SS G_CDS: 0.07 Total: -3.47 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -34.64 -6.42 -41.06 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841049108.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.913 kcal (2) G-P(sol) polarization free energy of solvation -34.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds