Wall clock time and date at job start Fri Apr 10 2020 23:06:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31554 * 1 3 3 Si 1.86795 * 120.00037 * 2 1 4 4 H 1.48496 * 109.47582 * 240.00084 * 3 2 1 5 5 H 1.48506 * 109.47231 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.47100 * 119.99896 * 3 2 1 7 7 C 1.38649 * 120.00161 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00215 * 179.97438 * 7 2 1 9 9 O 1.34834 * 119.99961 * 359.97438 * 7 2 1 10 10 C 1.35752 * 117.00023 * 174.59893 * 9 7 2 11 11 C 1.38954 * 120.02912 * 173.82368 * 10 9 7 12 12 C 1.38126 * 120.06511 * 179.71502 * 11 10 9 13 13 C 1.38206 * 120.13712 * 0.55675 * 12 11 10 14 14 C 1.38918 * 120.06796 * 359.71621 * 13 12 11 15 15 N 1.39948 * 120.03534 * 180.02562 * 14 13 12 16 16 C 1.34773 * 120.00173 * 326.33923 * 15 14 13 17 17 O 1.21591 * 119.99993 * 354.73754 * 16 15 14 18 18 N 1.34780 * 120.00018 * 174.73011 * 16 15 14 19 19 C 1.46493 * 119.99752 * 180.02562 * 18 16 15 20 20 C 1.53001 * 109.47038 * 180.02562 * 19 18 16 21 21 F 1.39902 * 109.46918 * 299.99913 * 20 19 18 22 22 F 1.39899 * 109.46982 * 59.99673 * 20 19 18 23 23 C 1.53000 * 109.47301 * 180.02562 * 20 19 18 24 24 N 1.46898 * 109.47087 * 179.97438 * 23 20 19 25 25 C 1.38729 * 120.03317 * 354.08934 * 10 9 7 26 26 H 0.97008 * 119.99966 * 0.02562 * 1 2 3 27 27 H 1.07997 * 119.96618 * 359.96966 * 11 10 9 28 28 H 1.08001 * 119.93332 * 180.27252 * 12 11 10 29 29 H 1.08001 * 119.96758 * 179.74148 * 13 12 11 30 30 H 0.97003 * 119.99302 * 146.33699 * 15 14 13 31 31 H 0.97003 * 119.99703 * 0.02562 * 18 16 15 32 32 H 1.09005 * 109.47586 * 299.99949 * 19 18 16 33 33 H 1.08997 * 109.47586 * 60.00395 * 19 18 16 34 34 H 1.09003 * 109.46852 * 299.99555 * 23 20 19 35 35 H 1.08991 * 109.47094 * 59.99846 * 23 20 19 36 36 H 1.00903 * 111.00021 * 56.04701 * 24 23 20 37 37 H 1.00899 * 111.00296 * 179.97438 * 24 23 20 38 38 H 1.08004 * 120.07097 * 359.97438 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 3.1033 1.6965 -1.2124 5 1 1.2845 2.7465 0.0006 6 1 3.1033 1.6964 1.2126 7 6 2.0088 -1.2007 -0.0005 8 1 3.0888 -1.2007 -0.0010 9 8 1.3347 -2.3684 -0.0005 10 6 2.0694 -3.5042 -0.1149 11 6 1.4553 -4.7448 0.0067 12 6 2.2011 -5.9010 -0.1154 13 6 3.5616 -5.8279 -0.3474 14 6 4.1822 -4.5906 -0.4643 15 7 5.5598 -4.5173 -0.6997 16 6 6.3834 -5.4464 -0.1754 17 8 5.9437 -6.2921 0.5796 18 7 7.6944 -5.4383 -0.4880 19 6 8.5895 -6.4485 0.0815 20 6 10.0126 -6.2155 -0.4298 21 9 10.0283 -6.3120 -1.8254 22 9 10.4432 -4.9410 -0.0457 23 6 10.9473 -7.2709 0.1644 24 7 12.3135 -7.0475 -0.3270 25 6 3.4348 -3.4274 -0.3479 26 1 -0.4850 0.8401 -0.0004 27 1 0.3932 -4.8050 0.1928 28 1 1.7209 -6.8641 -0.0249 29 1 4.1428 -6.7336 -0.4382 30 1 5.9218 -3.7978 -1.2403 31 1 8.0452 -4.7634 -1.0901 32 1 8.5776 -6.3730 1.1689 33 1 8.2537 -7.4414 -0.2175 34 1 10.9352 -7.1961 1.2518 35 1 10.6116 -8.2636 -0.1352 36 1 12.6242 -6.1105 -0.1182 37 1 12.9506 -7.7321 0.0518 38 1 3.9149 -2.4643 -0.4389 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000841049108.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:06:58 Heat of formation + Delta-G solvation = -150.377013 kcal Electronic energy + Delta-G solvation = -25424.409302 eV Core-core repulsion = 21130.510351 eV Total energy + Delta-G solvation = -4293.898951 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.118 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -50.07166 -48.05696 -41.74397 -40.47402 -38.33561 -36.51150 -35.69723 -35.48444 -34.21704 -31.50408 -30.70976 -29.81153 -27.30752 -26.09870 -23.59264 -23.46846 -22.81803 -21.85084 -20.24607 -19.45349 -19.28236 -18.82908 -18.02157 -17.84761 -16.96762 -16.96171 -16.60657 -16.31649 -15.97396 -15.87992 -15.67127 -15.49723 -15.39920 -15.22813 -14.89431 -14.57310 -14.43277 -14.30943 -14.06031 -13.84558 -13.54400 -13.24501 -13.16323 -12.76744 -12.68846 -12.39958 -12.13714 -12.06318 -11.60395 -11.32892 -11.18910 -10.72005 -10.42191 -9.83089 -9.33685 -8.84694 -8.45397 -6.14074 0.44499 0.71774 1.32459 1.36361 1.46857 1.52324 1.94739 2.18706 2.47169 2.85142 2.87989 3.00446 3.18624 3.30594 3.33546 3.50997 3.82691 4.12411 4.19108 4.33879 4.37871 4.46468 4.52702 4.62892 4.64115 4.71845 5.01657 5.08984 5.11601 5.30712 5.46491 5.68247 5.69332 5.81248 5.94732 6.02673 6.20627 6.39573 6.76858 6.98911 7.30812 7.78696 8.77322 Molecular weight = 315.12amu Principal moments of inertia in cm(-1) A = 0.017740 B = 0.002737 C = 0.002423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.019149 B =10226.515646 C =11553.844375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.022 4.022 3 Si 1.017 2.983 4 H -0.255 1.255 5 H -0.273 1.273 6 H -0.260 1.260 7 C -0.413 4.413 8 H 0.101 0.899 9 O -0.226 6.226 10 C 0.134 3.866 11 C -0.214 4.214 12 C -0.050 4.050 13 C -0.198 4.198 14 C 0.205 3.795 15 N -0.673 5.673 16 C 0.709 3.291 17 O -0.601 6.601 18 N -0.731 5.731 19 C 0.098 3.902 20 C 0.287 3.713 21 F -0.198 7.198 22 F -0.204 7.204 23 C 0.026 3.974 24 N -0.856 5.856 25 C -0.261 4.261 26 H 0.273 0.727 27 H 0.120 0.880 28 H 0.155 0.845 29 H 0.132 0.868 30 H 0.419 0.581 31 H 0.412 0.588 32 H 0.106 0.894 33 H 0.110 0.890 34 H 0.084 0.916 35 H 0.121 0.879 36 H 0.349 0.651 37 H 0.367 0.633 38 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.593 -13.218 -0.848 27.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.219 4.219 3 Si 0.836 3.164 4 H -0.179 1.179 5 H -0.198 1.198 6 H -0.184 1.184 7 C -0.489 4.489 8 H 0.119 0.881 9 O -0.132 6.132 10 C 0.083 3.917 11 C -0.234 4.234 12 C -0.068 4.068 13 C -0.219 4.219 14 C 0.110 3.890 15 N -0.321 5.321 16 C 0.409 3.591 17 O -0.479 6.479 18 N -0.388 5.388 19 C -0.027 4.027 20 C 0.249 3.751 21 F -0.179 7.179 22 F -0.185 7.185 23 C -0.106 4.106 24 N -0.390 5.390 25 C -0.283 4.283 26 H 0.082 0.918 27 H 0.138 0.862 28 H 0.173 0.827 29 H 0.150 0.850 30 H 0.257 0.743 31 H 0.248 0.752 32 H 0.124 0.876 33 H 0.128 0.872 34 H 0.102 0.898 35 H 0.139 0.861 36 H 0.163 0.837 37 H 0.183 0.817 38 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 23.596 -13.951 -0.900 27.426 hybrid contribution 0.558 1.913 0.348 2.023 sum 24.153 -12.037 -0.552 26.992 Atomic orbital electron populations 1.70178 1.08000 1.28860 1.48645 1.26564 0.96830 1.02687 0.95852 0.84668 0.77414 0.74364 0.79905 1.17892 1.19778 1.18414 1.21734 0.92432 0.81399 1.53336 0.88147 1.83986 1.35483 1.12470 1.81245 1.19598 0.90728 0.88042 0.93328 1.20487 1.00717 0.90024 1.12141 1.20922 0.92903 0.97601 0.95419 1.20873 0.94849 0.96254 1.09926 1.17171 0.81617 0.93171 0.97069 1.42413 1.04500 1.30503 1.54662 1.15822 0.81291 0.81697 0.80262 1.90939 1.76018 1.40691 1.40300 1.44686 1.05887 1.35491 1.52703 1.22354 0.85215 0.94076 1.01049 1.21622 0.95067 0.81572 0.76791 1.93046 1.97413 1.96150 1.31253 1.93020 1.91279 1.43337 1.90851 1.22737 0.89617 0.98603 0.99682 1.58550 1.02731 1.10015 1.67702 1.20797 0.94126 0.98090 1.15309 0.91835 0.86211 0.82707 0.85010 0.74312 0.75218 0.87632 0.87236 0.89794 0.86131 0.83750 0.81743 0.85384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.97 13.67 21.61 0.30 -55.68 16 2 C -0.02 -1.21 5.49 84.83 0.47 -0.75 16 3 Si 1.02 42.20 29.55 68.60 2.03 44.22 16 4 H -0.25 -9.79 7.11 99.48 0.71 -9.08 16 5 H -0.27 -10.96 7.11 99.48 0.71 -10.26 16 6 H -0.26 -10.19 7.11 99.48 0.71 -9.48 16 7 C -0.41 -23.71 9.44 67.92 0.64 -23.07 16 8 H 0.10 5.25 5.30 -2.91 -0.02 5.24 16 9 O -0.23 -13.46 9.76 -22.80 -0.22 -13.69 16 10 C 0.13 6.71 6.64 22.56 0.15 6.86 16 11 C -0.21 -9.25 9.99 22.41 0.22 -9.03 16 12 C -0.05 -1.79 10.03 22.24 0.22 -1.57 16 13 C -0.20 -7.22 8.65 22.43 0.19 -7.03 16 14 C 0.20 7.62 6.27 38.13 0.24 7.86 16 15 N -0.67 -19.28 5.35 -317.22 -1.70 -20.97 16 16 C 0.71 19.61 8.30 179.05 1.49 21.10 16 17 O -0.60 -20.70 14.05 -4.00 -0.06 -20.75 16 18 N -0.73 -13.95 5.42 -478.54 -2.59 -16.54 16 19 C 0.10 1.42 5.19 86.38 0.45 1.87 16 20 C 0.29 3.69 1.72 30.59 0.05 3.74 16 21 F -0.20 -3.47 16.84 44.97 0.76 -2.71 16 22 F -0.20 -3.20 16.40 44.97 0.74 -2.46 16 23 C 0.03 0.19 6.33 86.30 0.55 0.74 16 24 N -0.86 -7.24 9.55 -186.73 -1.78 -9.02 16 25 C -0.26 -11.39 9.04 22.51 0.20 -11.19 16 26 H 0.27 15.25 8.31 -92.70 -0.77 14.48 16 27 H 0.12 5.03 8.06 -2.91 -0.02 5.00 16 28 H 0.16 4.32 8.06 -2.91 -0.02 4.29 16 29 H 0.13 4.58 6.43 -2.91 -0.02 4.56 16 30 H 0.42 9.35 8.83 -92.71 -0.82 8.53 16 31 H 0.41 6.42 8.38 -92.71 -0.78 5.65 16 32 H 0.11 1.44 8.14 -2.38 -0.02 1.42 16 33 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.08 0.33 8.14 -2.39 -0.02 0.31 16 35 H 0.12 0.62 8.14 -2.39 -0.02 0.60 16 36 H 0.35 2.94 8.52 -89.69 -0.76 2.17 16 37 H 0.37 1.44 9.08 -89.69 -0.81 0.62 16 38 H 0.13 5.50 5.71 -2.91 -0.02 5.49 16 Total: -1.00 -77.42 338.25 0.34 -77.08 By element: Atomic # 1 Polarization: 32.97 SS G_CDS: -2.00 Total: 30.97 kcal Atomic # 6 Polarization: -15.33 SS G_CDS: 4.87 Total: -10.46 kcal Atomic # 7 Polarization: -96.43 SS G_CDS: -5.78 Total: -102.21 kcal Atomic # 8 Polarization: -34.16 SS G_CDS: -0.28 Total: -34.44 kcal Atomic # 9 Polarization: -6.66 SS G_CDS: 1.49 Total: -5.17 kcal Atomic # 14 Polarization: 42.20 SS G_CDS: 2.03 Total: 44.22 kcal Total: -77.42 0.34 -77.08 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841049108.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.299 kcal (2) G-P(sol) polarization free energy of solvation -77.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds