Wall clock time and date at job start Fri Apr 10 2020 23:07:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31579 * 1 3 3 Si 1.86803 * 119.99827 * 2 1 4 4 H 1.48499 * 109.47088 * 240.00258 * 3 2 1 5 5 H 1.48497 * 109.47386 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.46997 * 120.00605 * 3 2 1 7 7 C 1.38623 * 120.00088 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00163 * 179.97438 * 7 2 1 9 9 O 1.34800 * 120.00015 * 359.97438 * 7 2 1 10 10 C 1.35801 * 117.00374 * 185.06144 * 9 7 2 11 11 C 1.38728 * 120.08489 * 354.40466 * 10 9 7 12 12 C 1.38349 * 119.98019 * 179.97438 * 11 10 9 13 13 F 1.35099 * 119.91979 * 180.02562 * 12 11 10 14 14 C 1.38530 * 120.16216 * 0.02699 * 12 11 10 15 15 C 1.38216 * 120.17391 * 359.69232 * 14 12 11 16 16 C 1.38725 * 120.01382 * 0.56281 * 15 14 12 17 17 N 1.39926 * 120.07369 * 179.74592 * 16 15 14 18 18 C 1.46496 * 120.00376 * 359.44137 * 17 16 15 19 19 C 1.52999 * 109.47212 * 275.00000 * 18 17 16 20 20 C 1.53001 * 109.47362 * 179.97438 * 19 18 17 21 21 C 1.53004 * 109.46917 * 60.00390 * 20 19 18 22 22 F 1.39896 * 109.47380 * 180.02562 * 21 20 19 23 23 F 1.39900 * 109.47090 * 59.99937 * 21 20 19 24 24 C 1.53002 * 109.46793 * 300.00336 * 21 20 19 25 25 C 1.52993 * 109.47644 * 59.99928 * 24 21 20 26 26 H 0.97006 * 120.00101 * 359.97438 * 1 2 3 27 27 H 1.08000 * 120.00782 * 359.95553 * 11 10 9 28 28 H 1.07997 * 119.91212 * 179.97438 * 14 12 11 29 29 H 1.08001 * 119.99355 * 180.29696 * 15 14 12 30 30 H 0.97000 * 119.99482 * 179.71975 * 17 16 15 31 31 H 1.08994 * 109.47189 * 35.00745 * 18 17 16 32 32 H 1.08999 * 109.47613 * 299.99987 * 19 18 17 33 33 H 1.09005 * 109.46770 * 59.99961 * 19 18 17 34 34 H 1.08999 * 109.46960 * 300.00649 * 20 19 18 35 35 H 1.09000 * 109.47417 * 180.02562 * 20 19 18 36 36 H 1.09000 * 109.47030 * 299.99148 * 24 21 20 37 37 H 1.09005 * 109.46776 * 180.02562 * 24 21 20 38 38 H 1.09000 * 109.47397 * 179.97438 * 25 24 21 39 39 H 1.09005 * 109.47176 * 59.99807 * 25 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2498 1.6178 0.0000 4 1 3.1034 1.6965 -1.2125 5 1 1.2848 2.7465 0.0006 6 1 3.1036 1.6964 1.2124 7 6 2.0089 -1.2005 -0.0005 8 1 3.0889 -1.2005 -0.0010 9 8 1.3349 -2.3679 -0.0005 10 6 2.0705 -3.5045 0.1057 11 6 3.4562 -3.4401 0.0911 12 6 4.2034 -4.5993 0.2000 13 9 5.5528 -4.5351 0.1861 14 6 3.5713 -5.8258 0.3231 15 6 2.1911 -5.8971 0.3442 16 6 1.4347 -4.7398 0.2302 17 7 0.0374 -4.8111 0.2461 18 6 -0.6286 -6.1100 0.3709 19 6 -0.7579 -6.7517 -1.0120 20 6 -1.4528 -8.1086 -0.8816 21 6 -2.8451 -7.9126 -0.2782 22 9 -3.4804 -9.1532 -0.1584 23 9 -3.6009 -7.0795 -1.1101 24 6 -2.7158 -7.2707 1.1047 25 6 -2.0208 -5.9139 0.9743 26 1 -0.4850 0.8401 0.0004 27 1 3.9515 -2.4852 -0.0055 28 1 4.1585 -6.7283 0.4074 29 1 1.7014 -6.8544 0.4451 30 1 -0.4904 -4.0007 0.1704 31 1 -0.0401 -6.7591 1.0192 32 1 -1.3464 -6.1026 -1.6603 33 1 0.2340 -6.8917 -1.4417 34 1 -0.8639 -8.7575 -0.2334 35 1 -1.5445 -8.5660 -1.8667 36 1 -2.1270 -7.9198 1.7529 37 1 -3.7076 -7.1315 1.5348 38 1 -1.9291 -5.4565 1.9594 39 1 -2.6097 -5.2649 0.3261 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000843406322.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:07:01 Heat of formation + Delta-G solvation = -159.090035 kcal Electronic energy + Delta-G solvation = -26424.151631 eV Core-core repulsion = 22109.954893 eV Total energy + Delta-G solvation = -4314.196738 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.119 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.06427 -48.08972 -47.05122 -39.47380 -38.12734 -36.29021 -33.82208 -32.32899 -31.33961 -29.43904 -29.29504 -26.67433 -25.43897 -23.33489 -22.85449 -21.69598 -20.96843 -20.08531 -18.22689 -17.68429 -17.49368 -16.90157 -16.38297 -16.18407 -15.93860 -15.18583 -14.88148 -14.65912 -14.44479 -14.24764 -14.09908 -13.72538 -13.59518 -13.45569 -13.41587 -13.19558 -12.97866 -12.65639 -12.42503 -12.24750 -12.14655 -11.90877 -11.70458 -11.53796 -11.31478 -11.28299 -10.97745 -10.70487 -10.56537 -10.41804 -10.30887 -9.62526 -9.30940 -8.88716 -7.78709 -6.53094 -6.49944 -4.07111 2.06473 2.19041 3.11378 3.12106 3.14579 3.62124 3.72758 3.91957 3.93010 4.20305 4.40482 4.41576 4.73677 4.82659 4.92113 4.98811 5.04637 5.11391 5.19367 5.24092 5.40109 5.45807 5.56083 5.59325 5.60723 5.78938 5.86554 5.88464 6.04332 6.08429 6.23813 6.42454 6.52869 6.76249 6.97672 7.05911 7.21303 7.56828 7.87944 7.98715 8.34326 8.94737 9.59750 10.65839 Molecular weight = 315.12amu Principal moments of inertia in cm(-1) A = 0.013240 B = 0.003938 C = 0.003144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2114.309650 B = 7108.629981 C = 8904.238440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.041 3.959 3 Si 0.940 3.060 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.270 1.270 7 C -0.388 4.388 8 H 0.091 0.909 9 O -0.175 6.175 10 C 0.122 3.878 11 C -0.241 4.241 12 C 0.087 3.913 13 F -0.158 7.158 14 C -0.196 4.196 15 C -0.147 4.147 16 C 0.153 3.847 17 N -0.739 5.739 18 C 0.158 3.842 19 C -0.139 4.139 20 C -0.154 4.154 21 C 0.286 3.714 22 F -0.206 7.206 23 F -0.198 7.198 24 C -0.152 4.152 25 C -0.128 4.128 26 H 0.271 0.729 27 H 0.138 0.862 28 H 0.116 0.884 29 H 0.121 0.879 30 H 0.410 0.590 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.094 0.906 35 H 0.086 0.914 36 H 0.095 0.905 37 H 0.089 0.911 38 H 0.086 0.914 39 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.505 -13.903 1.267 14.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.163 4.163 3 Si 0.764 3.236 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.195 1.195 7 C -0.464 4.464 8 H 0.108 0.892 9 O -0.079 6.079 10 C 0.066 3.934 11 C -0.263 4.263 12 C 0.066 3.934 13 F -0.137 7.137 14 C -0.217 4.217 15 C -0.171 4.171 16 C 0.052 3.948 17 N -0.372 5.372 18 C 0.051 3.949 19 C -0.178 4.178 20 C -0.193 4.193 21 C 0.250 3.750 22 F -0.187 7.187 23 F -0.179 7.179 24 C -0.190 4.190 25 C -0.166 4.166 26 H 0.080 0.920 27 H 0.155 0.845 28 H 0.134 0.866 29 H 0.139 0.861 30 H 0.246 0.754 31 H 0.096 0.904 32 H 0.095 0.905 33 H 0.102 0.898 34 H 0.112 0.888 35 H 0.105 0.895 36 H 0.114 0.886 37 H 0.107 0.893 38 H 0.104 0.896 39 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -3.977 -13.829 1.252 14.444 hybrid contribution 0.443 1.053 -0.165 1.154 sum -3.534 -12.776 1.088 13.300 Atomic orbital electron populations 1.70008 1.05860 1.27845 1.46068 1.25233 0.95861 0.98708 0.96504 0.85791 0.78730 0.79750 0.79287 1.19477 1.20287 1.19483 1.21238 0.91806 0.80604 1.52723 0.89158 1.83887 1.33662 1.11083 1.79268 1.18597 0.89414 0.87237 0.98107 1.20801 0.93494 0.98246 1.13715 1.17242 0.75888 0.94296 1.05927 1.91381 1.30286 1.97382 1.94603 1.20294 0.94401 0.95573 1.11410 1.19952 0.92544 0.95812 1.08753 1.17068 0.83685 0.91113 1.02888 1.44322 1.02442 1.07306 1.83137 1.20747 0.92629 0.86502 0.95020 1.22112 1.01895 0.94382 0.99409 1.22492 0.93030 1.00503 1.03237 1.21190 0.87562 0.74913 0.91369 1.92993 1.84476 1.44529 1.96712 1.93005 1.78608 1.72097 1.74189 1.22453 1.03850 0.98478 0.94241 1.21770 0.95662 0.95930 1.03268 0.91965 0.84462 0.86566 0.86108 0.75374 0.90398 0.90473 0.89848 0.88779 0.89498 0.88626 0.89252 0.89585 0.90178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.01 13.67 55.48 0.76 -23.25 16 2 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 3 Si 0.94 20.07 29.55 -169.99 -5.02 15.05 16 4 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 5 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 6 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 7 C -0.39 -10.37 9.49 30.87 0.29 -10.08 16 8 H 0.09 2.28 5.21 -52.49 -0.27 2.01 16 9 O -0.17 -4.60 9.00 -0.02 0.00 -4.60 16 10 C 0.12 2.76 6.67 -38.94 -0.26 2.50 16 11 C -0.24 -5.27 9.14 -39.36 -0.36 -5.63 16 12 C 0.09 1.72 7.29 -39.43 -0.29 1.43 16 13 F -0.16 -3.04 17.26 2.25 0.04 -3.00 16 14 C -0.20 -3.39 10.02 -39.48 -0.40 -3.78 16 15 C -0.15 -2.42 8.89 -39.41 -0.35 -2.77 16 16 C 0.15 2.91 6.66 -83.52 -0.56 2.35 16 17 N -0.74 -12.27 5.25 -52.00 -0.27 -12.54 16 18 C 0.16 1.92 2.15 -67.93 -0.15 1.78 16 19 C -0.14 -1.58 5.34 -26.73 -0.14 -1.72 16 20 C -0.15 -1.44 5.45 -26.73 -0.15 -1.58 16 21 C 0.29 3.00 2.10 -26.73 -0.06 2.95 16 22 F -0.21 -2.35 17.06 2.25 0.04 -2.31 16 23 F -0.20 -2.53 16.03 2.25 0.04 -2.49 16 24 C -0.15 -1.37 5.45 -26.73 -0.15 -1.52 16 25 C -0.13 -1.39 5.27 -26.73 -0.14 -1.53 16 26 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 27 H 0.14 3.06 5.64 -52.49 -0.30 2.76 16 28 H 0.12 1.71 8.06 -52.49 -0.42 1.28 16 29 H 0.12 1.60 6.18 -52.49 -0.32 1.28 16 30 H 0.41 7.62 7.97 -40.82 -0.33 7.30 16 31 H 0.08 0.87 6.46 -51.93 -0.34 0.54 16 32 H 0.08 0.99 7.80 -51.93 -0.41 0.58 16 33 H 0.08 0.99 7.80 -51.93 -0.41 0.58 16 34 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 39 H 0.08 0.96 7.80 -51.93 -0.41 0.55 16 LS Contribution 330.50 15.07 4.98 4.98 Total: -1.00 -28.67 330.50 -6.67 -35.35 By element: Atomic # 1 Polarization: 13.87 SS G_CDS: -4.44 Total: 9.42 kcal Atomic # 6 Polarization: -13.81 SS G_CDS: -2.79 Total: -16.60 kcal Atomic # 7 Polarization: -36.28 SS G_CDS: 0.49 Total: -35.79 kcal Atomic # 8 Polarization: -4.60 SS G_CDS: 0.00 Total: -4.60 kcal Atomic # 9 Polarization: -7.93 SS G_CDS: 0.11 Total: -7.81 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.02 Total: 15.05 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -28.67 -6.67 -35.35 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000843406322.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.744 kcal (2) G-P(sol) polarization free energy of solvation -28.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds