Wall clock time and date at job start Fri Apr 10 2020 23:07:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31579 * 1 3 3 Si 1.86803 * 119.99827 * 2 1 4 4 H 1.48499 * 109.47088 * 240.00258 * 3 2 1 5 5 H 1.48497 * 109.47386 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.46997 * 120.00605 * 3 2 1 7 7 C 1.38623 * 120.00088 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00163 * 179.97438 * 7 2 1 9 9 O 1.34800 * 120.00015 * 359.97438 * 7 2 1 10 10 C 1.35801 * 117.00374 * 185.06144 * 9 7 2 11 11 C 1.38728 * 120.08489 * 354.40466 * 10 9 7 12 12 C 1.38349 * 119.98019 * 179.97438 * 11 10 9 13 13 F 1.35099 * 119.91979 * 180.02562 * 12 11 10 14 14 C 1.38530 * 120.16216 * 0.02699 * 12 11 10 15 15 C 1.38216 * 120.17391 * 359.69232 * 14 12 11 16 16 C 1.38725 * 120.01382 * 0.56281 * 15 14 12 17 17 N 1.39926 * 120.07369 * 179.74592 * 16 15 14 18 18 C 1.46496 * 120.00376 * 359.44137 * 17 16 15 19 19 C 1.52999 * 109.47212 * 275.00000 * 18 17 16 20 20 C 1.53001 * 109.47362 * 179.97438 * 19 18 17 21 21 C 1.53004 * 109.46917 * 60.00390 * 20 19 18 22 22 F 1.39896 * 109.47380 * 180.02562 * 21 20 19 23 23 F 1.39900 * 109.47090 * 59.99937 * 21 20 19 24 24 C 1.53002 * 109.46793 * 300.00336 * 21 20 19 25 25 C 1.52993 * 109.47644 * 59.99928 * 24 21 20 26 26 H 0.97006 * 120.00101 * 359.97438 * 1 2 3 27 27 H 1.08000 * 120.00782 * 359.95553 * 11 10 9 28 28 H 1.07997 * 119.91212 * 179.97438 * 14 12 11 29 29 H 1.08001 * 119.99355 * 180.29696 * 15 14 12 30 30 H 0.97000 * 119.99482 * 179.71975 * 17 16 15 31 31 H 1.08994 * 109.47189 * 35.00745 * 18 17 16 32 32 H 1.08999 * 109.47613 * 299.99987 * 19 18 17 33 33 H 1.09005 * 109.46770 * 59.99961 * 19 18 17 34 34 H 1.08999 * 109.46960 * 300.00649 * 20 19 18 35 35 H 1.09000 * 109.47417 * 180.02562 * 20 19 18 36 36 H 1.09000 * 109.47030 * 299.99148 * 24 21 20 37 37 H 1.09005 * 109.46776 * 180.02562 * 24 21 20 38 38 H 1.09000 * 109.47397 * 179.97438 * 25 24 21 39 39 H 1.09005 * 109.47176 * 59.99807 * 25 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2498 1.6178 0.0000 4 1 3.1034 1.6965 -1.2125 5 1 1.2848 2.7465 0.0006 6 1 3.1036 1.6964 1.2124 7 6 2.0089 -1.2005 -0.0005 8 1 3.0889 -1.2005 -0.0010 9 8 1.3349 -2.3679 -0.0005 10 6 2.0705 -3.5045 0.1057 11 6 3.4562 -3.4401 0.0911 12 6 4.2034 -4.5993 0.2000 13 9 5.5528 -4.5351 0.1861 14 6 3.5713 -5.8258 0.3231 15 6 2.1911 -5.8971 0.3442 16 6 1.4347 -4.7398 0.2302 17 7 0.0374 -4.8111 0.2461 18 6 -0.6286 -6.1100 0.3709 19 6 -0.7579 -6.7517 -1.0120 20 6 -1.4528 -8.1086 -0.8816 21 6 -2.8451 -7.9126 -0.2782 22 9 -3.4804 -9.1532 -0.1584 23 9 -3.6009 -7.0795 -1.1101 24 6 -2.7158 -7.2707 1.1047 25 6 -2.0208 -5.9139 0.9743 26 1 -0.4850 0.8401 0.0004 27 1 3.9515 -2.4852 -0.0055 28 1 4.1585 -6.7283 0.4074 29 1 1.7014 -6.8544 0.4451 30 1 -0.4904 -4.0007 0.1704 31 1 -0.0401 -6.7591 1.0192 32 1 -1.3464 -6.1026 -1.6603 33 1 0.2340 -6.8917 -1.4417 34 1 -0.8639 -8.7575 -0.2334 35 1 -1.5445 -8.5660 -1.8667 36 1 -2.1270 -7.9198 1.7529 37 1 -3.7076 -7.1315 1.5348 38 1 -1.9291 -5.4565 1.9594 39 1 -2.6097 -5.2649 0.3261 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000843406322.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:07:00 Heat of formation + Delta-G solvation = -174.936116 kcal Electronic energy + Delta-G solvation = -26424.838768 eV Core-core repulsion = 22109.954893 eV Total energy + Delta-G solvation = -4314.883876 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.119 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.93240 -49.61825 -47.93637 -40.97620 -39.33652 -37.82366 -35.06494 -34.24156 -32.15889 -30.90408 -30.59622 -28.00637 -27.28440 -24.27566 -24.03087 -23.08253 -22.30566 -21.04906 -19.98423 -19.27555 -18.34663 -17.98876 -17.54394 -17.29844 -17.14843 -16.92378 -16.43402 -16.05423 -15.82277 -15.51364 -15.29989 -15.18652 -15.07430 -14.64828 -14.42597 -14.23450 -14.07899 -13.76251 -13.60338 -13.56227 -13.32376 -13.25034 -12.99745 -12.77391 -12.51422 -12.49371 -12.22465 -12.18759 -12.00010 -11.64701 -11.48040 -11.19802 -10.77901 -10.63512 -9.40267 -8.45798 -8.00693 -6.07840 0.51207 0.64760 1.35637 1.44132 1.49472 2.16802 2.52086 2.79429 2.83427 3.11787 3.16478 3.35637 3.43712 3.52815 3.67809 3.82964 3.96971 4.03405 4.15351 4.27152 4.30174 4.33444 4.52764 4.56553 4.64265 4.77384 4.89071 4.89836 4.99292 5.01219 5.05160 5.11526 5.22347 5.33130 5.36150 5.47210 5.50770 5.97845 6.07292 6.60012 6.83462 7.00314 7.77268 8.75694 Molecular weight = 315.12amu Principal moments of inertia in cm(-1) A = 0.013240 B = 0.003938 C = 0.003144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2114.309650 B = 7108.629981 C = 8904.238440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C -0.014 4.014 3 Si 1.008 2.992 4 H -0.262 1.262 5 H -0.271 1.271 6 H -0.262 1.262 7 C -0.408 4.408 8 H 0.092 0.908 9 O -0.215 6.215 10 C 0.078 3.922 11 C -0.248 4.248 12 C 0.062 3.938 13 F -0.157 7.157 14 C -0.163 4.163 15 C -0.134 4.134 16 C 0.157 3.843 17 N -0.741 5.741 18 C 0.154 3.846 19 C -0.133 4.133 20 C -0.146 4.146 21 C 0.277 3.723 22 F -0.210 7.210 23 F -0.217 7.217 24 C -0.144 4.144 25 C -0.124 4.124 26 H 0.271 0.729 27 H 0.119 0.881 28 H 0.157 0.843 29 H 0.168 0.832 30 H 0.396 0.604 31 H 0.104 0.896 32 H 0.053 0.947 33 H 0.084 0.916 34 H 0.124 0.876 35 H 0.092 0.908 36 H 0.124 0.876 37 H 0.095 0.905 38 H 0.086 0.914 39 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.587 -17.004 2.059 17.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.212 4.212 3 Si 0.828 3.172 4 H -0.187 1.187 5 H -0.195 1.195 6 H -0.186 1.186 7 C -0.485 4.485 8 H 0.109 0.891 9 O -0.122 6.122 10 C 0.026 3.974 11 C -0.269 4.269 12 C 0.041 3.959 13 F -0.136 7.136 14 C -0.183 4.183 15 C -0.158 4.158 16 C 0.055 3.945 17 N -0.371 5.371 18 C 0.049 3.951 19 C -0.172 4.172 20 C -0.185 4.185 21 C 0.241 3.759 22 F -0.191 7.191 23 F -0.198 7.198 24 C -0.182 4.182 25 C -0.162 4.162 26 H 0.080 0.920 27 H 0.137 0.863 28 H 0.175 0.825 29 H 0.185 0.815 30 H 0.230 0.770 31 H 0.121 0.879 32 H 0.072 0.928 33 H 0.102 0.898 34 H 0.143 0.857 35 H 0.111 0.889 36 H 0.142 0.858 37 H 0.113 0.887 38 H 0.105 0.895 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -3.047 -17.005 2.045 17.397 hybrid contribution 0.202 1.701 -0.404 1.760 sum -2.845 -15.304 1.641 15.653 Atomic orbital electron populations 1.70133 1.07481 1.28631 1.48724 1.26316 0.96788 1.02031 0.96099 0.84788 0.77537 0.75211 0.79630 1.18688 1.19500 1.18633 1.21593 0.92158 0.81637 1.53089 0.89084 1.83855 1.34511 1.11722 1.82130 1.19112 0.90043 0.87769 1.00506 1.20856 0.93707 0.98680 1.13679 1.17370 0.76015 0.94632 1.07843 1.91378 1.30062 1.97406 1.94749 1.20824 0.94944 0.95748 1.06789 1.20450 0.92231 0.96534 1.06547 1.17391 0.85007 0.90620 1.01498 1.44600 1.01666 1.08617 1.82212 1.21079 0.93237 0.84668 0.96116 1.22001 1.01784 0.95200 0.98220 1.22480 0.92222 0.99408 1.04352 1.21526 0.87813 0.74572 0.91953 1.92986 1.84641 1.44709 1.96742 1.92976 1.79223 1.72731 1.74893 1.22445 1.04512 0.97427 0.93852 1.21699 0.94864 0.96976 1.02687 0.91954 0.86308 0.82492 0.81501 0.77041 0.87868 0.92833 0.89759 0.85728 0.88949 0.85788 0.88655 0.89496 0.92181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.44 13.67 21.61 0.30 -53.14 16 2 C -0.01 -0.77 5.49 84.82 0.47 -0.30 16 3 Si 1.01 42.57 29.55 68.60 2.03 44.59 16 4 H -0.26 -10.60 7.11 99.48 0.71 -9.90 16 5 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 6 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 7 C -0.41 -23.12 9.49 67.91 0.64 -22.48 16 8 H 0.09 4.90 5.21 -2.91 -0.02 4.89 16 9 O -0.22 -12.01 9.00 -23.00 -0.21 -12.21 16 10 C 0.08 3.66 6.67 22.69 0.15 3.81 16 11 C -0.25 -11.08 9.14 22.41 0.20 -10.88 16 12 C 0.06 2.37 7.29 22.37 0.16 2.53 16 13 F -0.16 -5.83 17.26 44.97 0.78 -5.06 16 14 C -0.16 -4.93 10.02 22.33 0.22 -4.71 16 15 C -0.13 -3.86 8.89 22.38 0.20 -3.66 16 16 C 0.16 5.81 6.66 38.27 0.25 6.06 16 17 N -0.74 -24.25 5.25 -318.42 -1.67 -25.92 16 18 C 0.15 3.36 2.15 44.99 0.10 3.46 16 19 C -0.13 -2.71 5.34 30.59 0.16 -2.54 16 20 C -0.15 -2.21 5.45 30.60 0.17 -2.04 16 21 C 0.28 5.14 2.10 30.60 0.06 5.21 16 22 F -0.21 -4.22 17.06 44.97 0.77 -3.45 16 23 F -0.22 -5.40 16.03 44.97 0.72 -4.68 16 24 C -0.14 -2.18 5.45 30.59 0.17 -2.02 16 25 C -0.12 -2.50 5.27 30.59 0.16 -2.34 16 26 H 0.27 14.75 8.31 -92.70 -0.77 13.98 16 27 H 0.12 5.61 5.64 -2.91 -0.02 5.59 16 28 H 0.16 3.57 8.06 -2.91 -0.02 3.54 16 29 H 0.17 3.30 6.18 -2.91 -0.02 3.28 16 30 H 0.40 15.38 7.97 -92.71 -0.74 14.64 16 31 H 0.10 1.78 6.46 -2.39 -0.02 1.76 16 32 H 0.05 1.35 7.80 -2.39 -0.02 1.33 16 33 H 0.08 1.72 7.80 -2.38 -0.02 1.70 16 34 H 0.12 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.12 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.09 1.37 8.14 -2.38 -0.02 1.35 16 38 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 39 H 0.06 1.45 7.80 -2.38 -0.02 1.44 16 Total: -1.00 -67.03 330.50 6.21 -60.82 By element: Atomic # 1 Polarization: 28.57 SS G_CDS: 0.37 Total: 28.94 kcal Atomic # 6 Polarization: -33.03 SS G_CDS: 3.13 Total: -29.90 kcal Atomic # 7 Polarization: -77.69 SS G_CDS: -1.37 Total: -79.06 kcal Atomic # 8 Polarization: -12.01 SS G_CDS: -0.21 Total: -12.21 kcal Atomic # 9 Polarization: -15.44 SS G_CDS: 2.26 Total: -13.18 kcal Atomic # 14 Polarization: 42.57 SS G_CDS: 2.03 Total: 44.59 kcal Total: -67.03 6.21 -60.82 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000843406322.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.116 kcal (2) G-P(sol) polarization free energy of solvation -67.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds