Wall clock time and date at job start Fri Apr 10 2020 23:07:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86796 * 119.99899 * 2 1 4 4 H 1.48495 * 109.47297 * 88.85128 * 3 2 1 5 5 H 1.48504 * 109.47062 * 208.85165 * 3 2 1 6 6 H 1.48496 * 109.47315 * 328.84819 * 3 2 1 7 7 C 1.37879 * 119.99764 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00361 * 4.07605 * 7 2 1 9 9 C 1.50705 * 119.99584 * 184.07644 * 7 2 1 10 10 C 1.52999 * 115.54958 * 272.98840 * 9 7 2 11 11 N 1.46504 * 109.47086 * 294.63664 * 10 9 7 12 12 C 1.39939 * 119.99963 * 180.67023 * 11 10 9 13 13 C 1.38867 * 120.01668 * 5.88542 * 12 11 10 14 14 C 1.38109 * 119.97479 * 179.74427 * 13 12 11 15 15 C 1.38697 * 120.02332 * 0.51078 * 14 13 12 16 16 O 1.36002 * 119.98467 * 179.74063 * 15 14 13 17 17 C 1.42905 * 116.99680 * 0.02840 * 16 15 14 18 18 C 1.52999 * 109.46971 * 179.97438 * 17 16 15 19 19 F 1.39905 * 109.47087 * 59.99756 * 18 17 16 20 20 F 1.39890 * 109.47228 * 179.97438 * 18 17 16 21 21 F 1.39896 * 109.47246 * 299.99943 * 18 17 16 22 22 C 1.38698 * 120.03650 * 359.76557 * 15 14 13 23 23 C 1.38110 * 120.02315 * 359.97438 * 22 15 14 24 24 C 1.52999 * 117.49455 * 127.32312 * 9 7 2 25 25 C 1.52998 * 117.49683 * 58.65960 * 9 7 2 26 26 H 0.96999 * 120.00126 * 0.02562 * 1 2 3 27 27 H 1.08998 * 109.47126 * 54.63345 * 10 9 7 28 28 H 1.08995 * 109.47123 * 174.63204 * 10 9 7 29 29 H 0.97002 * 120.00192 * 0.65903 * 11 10 9 30 30 H 1.07991 * 120.01245 * 0.02562 * 13 12 11 31 31 H 1.08000 * 119.98591 * 180.23116 * 14 13 12 32 32 H 1.09002 * 109.46482 * 299.99105 * 17 16 15 33 33 H 1.09000 * 109.47364 * 59.99663 * 17 16 15 34 34 H 1.07998 * 119.99274 * 179.97438 * 22 15 14 35 35 H 1.07996 * 120.01721 * 179.97438 * 23 22 15 36 36 H 1.09001 * 117.50176 * 359.97438 * 24 9 7 37 37 H 1.08998 * 117.49570 * 145.02522 * 24 9 7 38 38 H 1.08999 * 117.49488 * 214.97092 * 25 9 7 39 39 H 1.08998 * 117.50226 * 359.97438 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4723 2.0605 1.3997 5 1 3.5586 1.4333 -0.6756 6 1 1.4590 2.6455 -0.7242 7 6 2.0045 -1.1941 0.0005 8 1 1.4666 -2.1283 -0.0655 9 6 3.5087 -1.1957 0.0933 10 6 4.2521 -1.0760 -1.2386 11 7 3.9916 -2.2664 -2.0519 12 6 4.5792 -2.3927 -3.3156 13 6 5.5037 -1.4516 -3.7490 14 6 6.0870 -1.5800 -4.9943 15 6 5.7418 -2.6426 -5.8161 16 8 6.3128 -2.7653 -7.0444 17 6 7.2600 -1.7642 -7.4224 18 6 7.7910 -2.0683 -8.8247 19 9 6.7286 -2.0725 -9.7349 20 9 8.7178 -1.0880 -9.1950 21 9 8.4117 -3.3220 -8.8266 22 6 4.8142 -3.5798 -5.3863 23 6 4.2338 -3.4561 -4.1392 24 6 4.1482 -2.0566 1.1845 25 6 4.1416 -0.5316 1.3178 26 1 -0.4850 0.8400 -0.0004 27 1 3.9051 -0.1899 -1.7700 28 1 5.3224 -0.9913 -1.0509 29 1 3.4119 -2.9671 -1.7143 30 1 5.7699 -0.6221 -3.1108 31 1 6.8089 -0.8502 -5.3300 32 1 6.7763 -0.7874 -7.4206 33 1 8.0879 -1.7612 -6.7135 34 1 4.5455 -4.4067 -6.0270 35 1 3.5112 -4.1857 -3.8048 36 1 3.4810 -2.6216 1.8355 37 1 5.0988 -2.5374 0.9537 38 1 5.0879 -0.0100 1.1746 39 1 3.4701 -0.0933 2.0560 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000846756370.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:07:02 Heat of formation + Delta-G solvation = -151.466582 kcal Electronic energy + Delta-G solvation = -25394.852390 eV Core-core repulsion = 21080.986230 eV Total energy + Delta-G solvation = -4313.866160 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.119 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -51.16705 -48.71231 -48.64845 -41.10356 -39.49595 -38.38810 -35.18657 -34.21030 -32.05274 -31.33962 -29.47255 -27.83622 -26.44502 -24.99000 -23.31548 -23.21798 -22.33768 -20.90329 -19.93300 -19.69337 -18.95280 -18.71952 -18.29384 -17.68689 -16.90945 -16.77036 -16.61512 -15.83303 -15.53453 -15.47218 -15.44726 -15.14635 -15.08888 -14.81839 -14.80490 -14.76882 -14.67654 -14.30958 -14.02488 -13.95041 -13.57620 -13.35031 -13.04389 -12.74671 -12.70638 -12.28636 -12.15695 -11.90874 -11.70841 -11.54472 -10.96700 -10.67705 -10.41663 -10.26588 -9.89335 -8.28931 -7.95251 -6.35862 0.45281 0.73146 1.29699 1.36675 1.39629 1.50216 2.10584 2.37716 2.61726 2.72255 2.91354 2.97719 3.07052 3.33251 3.36157 3.90226 3.97022 4.00866 4.06915 4.08234 4.38209 4.42184 4.42870 4.50732 4.60010 4.68330 4.80619 4.87719 5.09100 5.10935 5.18379 5.37345 5.41367 5.48289 5.49980 5.71471 5.72888 6.27158 6.32890 6.61912 6.72756 7.01996 7.34348 8.86588 Molecular weight = 315.12amu Principal moments of inertia in cm(-1) A = 0.022815 B = 0.002594 C = 0.002544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.970080 B =10790.098061 C =11003.068076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.020 3.980 3 Si 0.936 3.064 4 H -0.270 1.270 5 H -0.227 1.227 6 H -0.303 1.303 7 C -0.481 4.481 8 H 0.033 0.967 9 C -0.036 4.036 10 C 0.170 3.830 11 N -0.731 5.731 12 C 0.184 3.816 13 C -0.179 4.179 14 C -0.146 4.146 15 C 0.045 3.955 16 O -0.320 6.320 17 C 0.012 3.988 18 C 0.467 3.533 19 F -0.185 7.185 20 F -0.170 7.170 21 F -0.184 7.184 22 C -0.096 4.096 23 C -0.171 4.171 24 C -0.159 4.159 25 C -0.189 4.189 26 H 0.264 0.736 27 H 0.038 0.962 28 H 0.061 0.939 29 H 0.399 0.601 30 H 0.128 0.872 31 H 0.154 0.846 32 H 0.126 0.874 33 H 0.130 0.870 34 H 0.141 0.859 35 H 0.134 0.866 36 H 0.075 0.925 37 H 0.103 0.897 38 H 0.106 0.894 39 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.960 -2.346 -13.854 23.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.178 4.178 3 Si 0.761 3.239 4 H -0.195 1.195 5 H -0.150 1.150 6 H -0.231 1.231 7 C -0.519 4.519 8 H 0.052 0.948 9 C -0.037 4.037 10 C 0.046 3.954 11 N -0.359 5.359 12 C 0.079 3.921 13 C -0.202 4.202 14 C -0.165 4.165 15 C 0.000 4.000 16 O -0.235 6.235 17 C -0.065 4.065 18 C 0.413 3.587 19 F -0.167 7.167 20 F -0.152 7.152 21 F -0.165 7.165 22 C -0.115 4.115 23 C -0.194 4.194 24 C -0.196 4.196 25 C -0.227 4.227 26 H 0.073 0.927 27 H 0.056 0.944 28 H 0.079 0.921 29 H 0.234 0.766 30 H 0.146 0.854 31 H 0.172 0.828 32 H 0.144 0.856 33 H 0.147 0.853 34 H 0.158 0.842 35 H 0.151 0.849 36 H 0.094 0.906 37 H 0.121 0.879 38 H 0.124 0.876 39 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 18.839 -2.213 -13.916 23.526 hybrid contribution -0.692 0.600 0.190 0.936 sum 18.147 -1.613 -13.726 22.810 Atomic orbital electron populations 1.70051 1.08453 1.27957 1.52566 1.25822 0.95146 1.02969 0.93818 0.85938 0.80442 0.78581 0.78933 1.19550 1.15008 1.23052 1.20381 0.89213 0.92631 1.49668 0.94838 1.19436 0.92827 1.03626 0.87810 1.20923 0.97000 0.87108 0.90387 1.44693 1.53043 1.22859 1.15281 1.18188 0.92885 0.94899 0.86080 1.20614 1.00419 1.01132 0.98029 1.21157 1.02569 0.98451 0.94334 1.18593 0.98677 0.97899 0.84802 1.85950 1.56181 1.48823 1.32570 1.23942 0.96155 0.94842 0.91560 1.20191 0.75707 0.74255 0.88589 1.93214 1.56770 1.96157 1.70542 1.93225 1.66911 1.62430 1.92607 1.93210 1.83439 1.42914 1.96969 1.20263 0.96295 0.99139 0.95821 1.20567 1.04332 1.00139 0.94330 1.22829 1.01569 0.92424 1.02797 1.23024 1.01952 0.96193 1.01527 0.92744 0.94398 0.92076 0.76622 0.85412 0.82819 0.85636 0.85270 0.84152 0.84859 0.90591 0.87852 0.87623 0.90847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.96 13.96 21.45 0.30 -57.66 16 2 C 0.02 1.10 5.47 84.65 0.46 1.56 16 3 Si 0.94 42.21 25.00 68.60 1.71 43.93 16 4 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 5 H -0.23 -9.02 5.63 99.48 0.56 -8.46 16 6 H -0.30 -14.07 7.11 99.48 0.71 -13.36 16 7 C -0.48 -25.46 9.23 25.60 0.24 -25.23 16 8 H 0.03 2.00 8.06 -2.91 -0.02 1.98 16 9 C -0.04 -1.46 0.83 -52.93 -0.04 -1.51 16 10 C 0.17 6.11 4.41 86.38 0.38 6.49 16 11 N -0.73 -24.92 5.66 -339.26 -1.92 -26.84 16 12 C 0.18 5.58 6.65 38.15 0.25 5.84 16 13 C -0.18 -4.78 9.31 22.39 0.21 -4.57 16 14 C -0.15 -3.18 9.03 22.35 0.20 -2.98 16 15 C 0.05 1.06 6.69 22.49 0.15 1.21 16 16 O -0.32 -6.76 10.03 -93.57 -0.94 -7.70 16 17 C 0.01 0.16 4.70 71.98 0.34 0.50 16 18 C 0.47 7.42 3.32 71.98 0.24 7.66 16 19 F -0.19 -3.61 17.26 44.97 0.78 -2.84 16 20 F -0.17 -2.50 17.32 44.97 0.78 -1.72 16 21 F -0.18 -3.47 17.26 44.97 0.78 -2.69 16 22 C -0.10 -2.39 9.98 22.35 0.22 -2.16 16 23 C -0.17 -4.69 9.89 22.39 0.22 -4.47 16 24 C -0.16 -5.58 9.96 30.62 0.30 -5.27 16 25 C -0.19 -6.89 7.70 30.62 0.24 -6.65 16 26 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 27 H 0.04 1.49 6.42 -2.39 -0.02 1.47 16 28 H 0.06 1.87 7.64 -2.39 -0.02 1.85 16 29 H 0.40 14.15 8.40 -92.71 -0.78 13.37 16 30 H 0.13 3.25 6.72 -2.91 -0.02 3.23 16 31 H 0.15 2.21 6.29 -2.91 -0.02 2.19 16 32 H 0.13 1.22 7.66 -2.39 -0.02 1.20 16 33 H 0.13 1.14 7.66 -2.39 -0.02 1.12 16 34 H 0.14 3.01 8.06 -2.91 -0.02 2.99 16 35 H 0.13 3.40 8.06 -2.91 -0.02 3.37 16 36 H 0.08 2.82 8.14 -2.39 -0.02 2.80 16 37 H 0.10 3.03 8.14 -2.39 -0.02 3.01 16 38 H 0.11 3.19 8.14 -2.39 -0.02 3.17 16 39 H 0.07 2.93 7.41 -2.39 -0.02 2.91 16 Total: -1.00 -63.89 338.60 5.07 -58.82 By element: Atomic # 1 Polarization: 26.11 SS G_CDS: 0.17 Total: 26.28 kcal Atomic # 6 Polarization: -33.00 SS G_CDS: 3.41 Total: -29.59 kcal Atomic # 7 Polarization: -82.88 SS G_CDS: -1.62 Total: -84.50 kcal Atomic # 8 Polarization: -6.76 SS G_CDS: -0.94 Total: -7.70 kcal Atomic # 9 Polarization: -9.58 SS G_CDS: 2.33 Total: -7.25 kcal Atomic # 14 Polarization: 42.21 SS G_CDS: 1.71 Total: 43.93 kcal Total: -63.89 5.07 -58.82 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846756370.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.646 kcal (2) G-P(sol) polarization free energy of solvation -63.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds