Wall clock time and date at job start Fri Apr 10 2020 23:07:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.43206 * 179.97438 * 2 1 4 4 C 1.39708 * 120.19731 * 123.49626 * 3 2 1 5 5 C 1.37823 * 119.91354 * 179.97438 * 4 3 2 6 6 C 1.38549 * 120.33073 * 0.02562 * 5 4 3 7 7 C 1.38047 * 120.40980 * 359.68289 * 6 5 4 8 8 C 1.38821 * 120.07696 * 0.59652 * 7 6 5 9 9 N 1.39333 * 120.16259 * 179.70164 * 8 7 6 10 10 C 1.34779 * 120.00443 * 4.78944 * 9 8 7 11 11 S 1.71197 * 120.00022 * 259.25230 * 10 9 8 12 12 N 1.34773 * 119.99795 * 79.25678 * 10 9 8 13 13 C 1.46928 * 120.63395 * 355.03079 * 12 10 9 14 14 C 1.53190 * 108.77365 * 126.41762 * 13 12 10 15 15 C 1.53043 * 109.31141 * 54.63702 * 14 13 12 16 16 C 1.53037 * 109.53975 * 298.63240 * 15 14 13 17 17 H 1.09005 * 109.49648 * 301.41370 * 16 15 14 18 18 C 1.50700 * 109.49656 * 181.35060 * 16 15 14 19 19 H 1.07996 * 120.00097 * 0.06181 * 18 16 15 20 20 C 1.37875 * 119.99818 * 180.02562 * 18 16 15 21 21 N 1.31517 * 120.00164 * 359.97438 * 20 18 16 22 22 Si 1.86800 * 120.00084 * 179.97438 * 20 18 16 23 23 H 1.48493 * 109.47181 * 59.99699 * 22 20 18 24 24 H 1.48499 * 109.47068 * 179.97438 * 22 20 18 25 25 H 1.48501 * 109.47002 * 299.99748 * 22 20 18 26 26 C 1.46995 * 120.61305 * 175.06195 * 12 10 9 27 27 H 1.08002 * 120.04344 * 359.94914 * 4 3 2 28 28 H 1.07999 * 119.83184 * 179.97438 * 5 4 3 29 29 H 1.08003 * 119.79000 * 179.97438 * 6 5 4 30 30 H 1.08007 * 119.96047 * 180.32474 * 7 6 5 31 31 H 0.97002 * 119.99336 * 184.78923 * 9 8 7 32 32 H 1.09000 * 109.58194 * 6.63218 * 13 12 10 33 33 H 1.08994 * 109.58668 * 246.21002 * 13 12 10 34 34 H 1.09005 * 109.49660 * 294.68516 * 14 13 12 35 35 H 1.09000 * 109.49597 * 174.59100 * 14 13 12 36 36 H 1.09006 * 109.45628 * 178.61421 * 15 14 13 37 37 H 1.08995 * 109.44784 * 58.64897 * 15 14 13 38 38 H 0.96998 * 120.00314 * 179.97438 * 21 20 18 39 39 H 1.08997 * 109.58548 * 113.80260 * 26 12 10 40 40 H 1.09004 * 109.62945 * 353.35513 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2704 0.6673 -1.0070 5 6 4.6486 0.6646 -1.0010 6 6 5.3426 0.0031 -0.0008 7 6 4.6623 -0.6550 1.0040 8 6 3.2741 -0.6681 1.0113 9 7 2.5857 -1.3369 2.0213 10 6 3.2633 -1.8909 3.0462 11 16 3.5686 -3.5754 3.0596 12 7 3.7005 -1.1187 4.0606 13 6 3.5422 0.3412 4.0121 14 6 2.8285 0.8023 5.2868 15 6 3.5964 0.2936 6.5090 16 6 3.6224 -1.2365 6.4967 17 1 2.6012 -1.6178 6.4999 18 6 4.3500 -1.7371 7.7178 19 1 4.7529 -1.0345 8.4321 20 6 4.5007 -3.0921 7.9233 21 7 4.0090 -3.9478 7.0539 22 14 5.4032 -3.7126 9.4365 23 1 4.7040 -3.2400 10.6583 24 1 5.4279 -5.1973 9.4240 25 1 6.7946 -3.1938 9.4304 26 6 4.3453 -1.7214 5.2360 27 1 2.7341 1.1839 -1.7893 28 1 5.1903 1.1801 -1.7803 29 1 6.4227 0.0062 -0.0049 30 1 5.2106 -1.1639 1.7830 31 1 1.6186 -1.4039 1.9866 32 1 2.9475 0.6155 3.1408 33 1 4.5227 0.8132 3.9512 34 1 1.8148 0.4019 5.3014 35 1 2.7903 1.8914 5.3086 36 1 3.1043 0.6411 7.4175 37 1 4.6173 0.6744 6.4806 38 1 4.1153 -4.9010 7.1983 39 1 5.3913 -1.4175 5.2750 40 1 4.2804 -2.8077 5.1726 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000849272175.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:07:04 Heat of formation + Delta-G solvation = 84.192754 kcal Electronic energy + Delta-G solvation = -23740.556392 eV Core-core repulsion = 20453.811550 eV Total energy + Delta-G solvation = -3286.744842 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.110 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.71654 -38.94801 -36.58448 -36.48122 -33.59494 -32.63894 -31.55501 -30.17174 -29.94766 -25.93865 -25.34779 -24.17885 -23.09256 -22.45273 -20.96259 -19.49401 -19.24973 -17.75788 -17.66671 -17.05426 -16.30371 -15.32585 -15.00994 -14.74699 -14.51993 -14.37446 -14.30483 -13.98181 -13.72723 -13.33886 -13.03316 -12.96490 -12.93328 -12.78650 -12.19576 -11.95742 -11.58743 -11.48368 -11.28082 -11.12917 -10.88412 -10.65988 -10.61002 -10.41522 -10.21657 -9.73484 -9.38585 -9.26586 -9.20184 -8.51645 -8.10255 -7.32479 -6.77635 -6.09366 -4.21337 0.57005 1.02062 1.18198 2.24654 2.45838 2.76430 3.13965 3.26412 3.33771 3.34804 3.41132 3.67424 3.72390 4.34613 4.48589 4.70408 4.89518 4.98765 5.05084 5.08234 5.16107 5.19402 5.29586 5.51891 5.62096 5.78769 5.80031 5.96767 5.98252 6.08674 6.20933 6.30869 6.37940 6.49934 6.63009 6.63505 6.85422 6.88837 7.10377 7.22747 7.32668 7.55802 7.66809 7.90283 8.19693 8.80710 9.45405 10.94432 Molecular weight = 315.11amu Principal moments of inertia in cm(-1) A = 0.019568 B = 0.003891 C = 0.003781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1430.541422 B = 7194.909006 C = 7404.591790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C 0.255 3.745 3 C -0.096 4.096 4 C -0.029 4.029 5 C -0.167 4.167 6 C -0.040 4.040 7 C -0.177 4.177 8 C 0.256 3.744 9 N -0.688 5.688 10 C 0.535 3.465 11 S -0.562 6.562 12 N -0.499 5.499 13 C 0.082 3.918 14 C -0.132 4.132 15 C -0.116 4.116 16 C 0.047 3.953 17 H 0.032 0.968 18 C -0.531 4.531 19 H 0.060 0.940 20 C 0.067 3.933 21 N -0.865 5.865 22 Si 0.893 3.107 23 H -0.277 1.277 24 H -0.285 1.285 25 H -0.276 1.276 26 C 0.076 3.924 27 H 0.134 0.866 28 H 0.132 0.868 29 H 0.133 0.867 30 H 0.134 0.866 31 H 0.420 0.580 32 H 0.078 0.922 33 H 0.083 0.917 34 H 0.062 0.938 35 H 0.069 0.931 36 H 0.059 0.941 37 H 0.054 0.946 38 H 0.269 0.731 39 H 0.064 0.936 40 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.473 12.721 -13.623 18.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.096 5.096 2 C -0.060 4.060 3 C -0.105 4.105 4 C -0.050 4.050 5 C -0.187 4.187 6 C -0.060 4.060 7 C -0.200 4.200 8 C 0.148 3.852 9 N -0.322 5.322 10 C 0.184 3.816 11 S -0.428 6.428 12 N -0.198 5.198 13 C -0.044 4.044 14 C -0.170 4.170 15 C -0.154 4.154 16 C 0.027 3.973 17 H 0.050 0.950 18 C -0.569 4.569 19 H 0.079 0.921 20 C -0.138 4.138 21 N -0.501 5.501 22 Si 0.721 3.279 23 H -0.203 1.203 24 H -0.211 1.211 25 H -0.202 1.202 26 C -0.043 4.043 27 H 0.152 0.848 28 H 0.150 0.850 29 H 0.151 0.849 30 H 0.152 0.848 31 H 0.262 0.738 32 H 0.097 0.903 33 H 0.102 0.898 34 H 0.081 0.919 35 H 0.088 0.912 36 H 0.078 0.922 37 H 0.073 0.927 38 H 0.079 0.921 39 H 0.083 0.917 40 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 1.043 11.467 -13.313 17.602 hybrid contribution 0.281 0.517 0.770 0.969 sum 1.324 11.984 -12.544 17.399 Atomic orbital electron populations 1.81291 1.11836 1.08949 1.07560 1.25577 0.92530 0.93749 0.94148 1.15465 0.84190 1.09819 1.01009 1.20943 0.94254 0.94660 0.95107 1.20924 0.93432 1.03658 1.00696 1.21171 1.00417 0.92568 0.91817 1.20822 0.91150 1.05250 1.02734 1.17713 0.91622 0.89078 0.86780 1.41953 1.09905 1.58794 1.21534 1.22378 0.83683 0.94221 0.81272 1.93324 1.68484 0.94182 1.86799 1.49375 1.46827 1.07044 1.16513 1.22196 1.01985 0.80257 0.99950 1.21955 0.99903 1.00242 0.94908 1.21726 0.98820 0.99406 0.95410 1.18971 0.97148 0.89036 0.92108 0.95016 1.20891 1.38133 0.91727 1.06133 0.92139 1.25069 0.95229 0.97037 0.96494 1.69836 1.43058 1.02733 1.34440 0.86634 0.80231 0.77880 0.83166 1.20301 1.21081 1.20174 1.23644 0.94776 1.06099 0.79818 0.84819 0.84980 0.84893 0.84825 0.73780 0.90329 0.89833 0.91876 0.91224 0.92223 0.92712 0.92096 0.91737 0.81701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -5.86 18.54 41.84 0.78 -5.09 16 2 C 0.25 3.03 14.10 -22.47 -0.32 2.71 16 3 C -0.10 -0.99 5.75 -106.64 -0.61 -1.60 16 4 C -0.03 -0.22 9.75 -39.18 -0.38 -0.60 16 5 C -0.17 -1.13 10.02 -39.62 -0.40 -1.53 16 6 C -0.04 -0.33 10.03 -39.54 -0.40 -0.72 16 7 C -0.18 -1.99 9.12 -39.44 -0.36 -2.35 16 8 C 0.26 3.05 5.36 -83.46 -0.45 2.60 16 9 N -0.69 -9.83 4.19 -11.21 -0.05 -9.88 16 10 C 0.53 9.46 5.39 -86.92 -0.47 8.99 16 11 S -0.56 -12.59 28.67 -107.50 -3.08 -15.68 16 12 N -0.50 -8.63 2.97 -174.74 -0.52 -9.15 16 13 C 0.08 1.11 6.05 -3.71 -0.02 1.09 16 14 C -0.13 -1.87 6.08 -26.61 -0.16 -2.03 16 15 C -0.12 -2.04 5.11 -26.69 -0.14 -2.18 16 16 C 0.05 1.05 2.25 -91.65 -0.21 0.84 16 17 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 18 C -0.53 -13.32 8.56 -34.44 -0.29 -13.61 16 19 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 20 C 0.07 1.74 5.30 -17.82 -0.09 1.65 16 21 N -0.87 -23.72 11.40 55.43 0.63 -23.09 16 22 Si 0.89 20.29 29.54 -169.99 -5.02 15.27 16 23 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 24 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 25 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 26 C 0.08 1.63 5.28 -3.67 -0.02 1.61 16 27 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 28 H 0.13 0.56 8.06 -52.49 -0.42 0.14 16 29 H 0.13 0.80 8.06 -52.48 -0.42 0.38 16 30 H 0.13 1.78 7.01 -52.48 -0.37 1.41 16 31 H 0.42 5.87 7.68 -40.82 -0.31 5.55 16 32 H 0.08 0.95 6.07 -51.93 -0.31 0.63 16 33 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 39 H 0.06 1.37 8.14 -51.93 -0.42 0.94 16 40 H 0.17 4.11 4.12 -50.54 -0.21 3.90 16 LS Contribution 346.88 15.07 5.23 5.23 Total: -1.00 -29.73 346.88 -11.33 -41.05 By element: Atomic # 1 Polarization: 11.45 SS G_CDS: -4.97 Total: 6.47 kcal Atomic # 6 Polarization: -0.81 SS G_CDS: -4.32 Total: -5.13 kcal Atomic # 7 Polarization: -48.05 SS G_CDS: 0.84 Total: -47.21 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.27 kcal Atomic # 16 Polarization: -12.59 SS G_CDS: -3.08 Total: -15.68 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -29.73 -11.33 -41.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849272175.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.247 kcal (2) G-P(sol) polarization free energy of solvation -29.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.054 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds