Wall clock time and date at job start Fri Apr 10 2020 23:07:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.43206 * 179.97438 * 2 1 4 4 C 1.39708 * 120.19731 * 123.49626 * 3 2 1 5 5 C 1.37823 * 119.91354 * 179.97438 * 4 3 2 6 6 C 1.38549 * 120.33073 * 0.02562 * 5 4 3 7 7 C 1.38047 * 120.40980 * 359.68289 * 6 5 4 8 8 C 1.38821 * 120.07696 * 0.59652 * 7 6 5 9 9 N 1.39333 * 120.16259 * 179.70164 * 8 7 6 10 10 C 1.34779 * 120.00443 * 4.78944 * 9 8 7 11 11 S 1.71197 * 120.00022 * 259.25230 * 10 9 8 12 12 N 1.34773 * 119.99795 * 79.25678 * 10 9 8 13 13 C 1.46928 * 120.63395 * 355.03079 * 12 10 9 14 14 C 1.53190 * 108.77365 * 126.41762 * 13 12 10 15 15 C 1.53043 * 109.31141 * 54.63702 * 14 13 12 16 16 C 1.53037 * 109.53975 * 298.63240 * 15 14 13 17 17 H 1.09005 * 109.49648 * 301.41370 * 16 15 14 18 18 C 1.50700 * 109.49656 * 181.35060 * 16 15 14 19 19 H 1.07996 * 120.00097 * 0.06181 * 18 16 15 20 20 C 1.37875 * 119.99818 * 180.02562 * 18 16 15 21 21 N 1.31517 * 120.00164 * 359.97438 * 20 18 16 22 22 Si 1.86800 * 120.00084 * 179.97438 * 20 18 16 23 23 H 1.48493 * 109.47181 * 59.99699 * 22 20 18 24 24 H 1.48499 * 109.47068 * 179.97438 * 22 20 18 25 25 H 1.48501 * 109.47002 * 299.99748 * 22 20 18 26 26 C 1.46995 * 120.61305 * 175.06195 * 12 10 9 27 27 H 1.08002 * 120.04344 * 359.94914 * 4 3 2 28 28 H 1.07999 * 119.83184 * 179.97438 * 5 4 3 29 29 H 1.08003 * 119.79000 * 179.97438 * 6 5 4 30 30 H 1.08007 * 119.96047 * 180.32474 * 7 6 5 31 31 H 0.97002 * 119.99336 * 184.78923 * 9 8 7 32 32 H 1.09000 * 109.58194 * 6.63218 * 13 12 10 33 33 H 1.08994 * 109.58668 * 246.21002 * 13 12 10 34 34 H 1.09005 * 109.49660 * 294.68516 * 14 13 12 35 35 H 1.09000 * 109.49597 * 174.59100 * 14 13 12 36 36 H 1.09006 * 109.45628 * 178.61421 * 15 14 13 37 37 H 1.08995 * 109.44784 * 58.64897 * 15 14 13 38 38 H 0.96998 * 120.00314 * 179.97438 * 21 20 18 39 39 H 1.08997 * 109.58548 * 113.80260 * 26 12 10 40 40 H 1.09004 * 109.62945 * 353.35513 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2704 0.6673 -1.0070 5 6 4.6486 0.6646 -1.0010 6 6 5.3426 0.0031 -0.0008 7 6 4.6623 -0.6550 1.0040 8 6 3.2741 -0.6681 1.0113 9 7 2.5857 -1.3369 2.0213 10 6 3.2633 -1.8909 3.0462 11 16 3.5686 -3.5754 3.0596 12 7 3.7005 -1.1187 4.0606 13 6 3.5422 0.3412 4.0121 14 6 2.8285 0.8023 5.2868 15 6 3.5964 0.2936 6.5090 16 6 3.6224 -1.2365 6.4967 17 1 2.6012 -1.6178 6.4999 18 6 4.3500 -1.7371 7.7178 19 1 4.7529 -1.0345 8.4321 20 6 4.5007 -3.0921 7.9233 21 7 4.0090 -3.9478 7.0539 22 14 5.4032 -3.7126 9.4365 23 1 4.7040 -3.2400 10.6583 24 1 5.4279 -5.1973 9.4240 25 1 6.7946 -3.1938 9.4304 26 6 4.3453 -1.7214 5.2360 27 1 2.7341 1.1839 -1.7893 28 1 5.1903 1.1801 -1.7803 29 1 6.4227 0.0062 -0.0049 30 1 5.2106 -1.1639 1.7830 31 1 1.6186 -1.4039 1.9866 32 1 2.9475 0.6155 3.1408 33 1 4.5227 0.8132 3.9512 34 1 1.8148 0.4019 5.3014 35 1 2.7903 1.8914 5.3086 36 1 3.1043 0.6411 7.4175 37 1 4.6173 0.6744 6.4806 38 1 4.1153 -4.9010 7.1983 39 1 5.3913 -1.4175 5.2750 40 1 4.2804 -2.8077 5.1726 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000849272175.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:07:04 Heat of formation + Delta-G solvation = 68.653688 kcal Electronic energy + Delta-G solvation = -23741.230217 eV Core-core repulsion = 20453.811550 eV Total energy + Delta-G solvation = -3287.418667 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.110 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.83132 -40.13964 -37.74766 -37.49188 -35.25458 -34.11198 -32.34333 -31.82299 -30.87069 -27.29062 -27.15418 -24.96331 -24.34462 -23.82088 -22.23606 -20.82969 -20.28132 -19.03969 -18.79913 -18.33673 -18.13734 -16.56312 -16.21836 -15.79699 -15.69007 -15.64174 -15.38470 -15.20378 -14.95310 -14.63207 -14.43828 -14.18054 -13.95262 -13.89980 -13.71329 -12.92992 -12.84549 -12.76782 -12.64264 -12.47300 -12.32162 -12.24108 -12.14016 -11.98938 -11.55250 -11.30388 -11.04858 -11.01069 -10.50267 -10.00936 -9.08554 -9.00658 -8.49864 -8.08066 -6.26899 -0.42433 -0.17143 0.38430 0.78200 1.44478 1.45370 1.52082 1.53607 1.76624 1.92895 2.10962 2.43965 2.81225 2.90783 3.19376 3.70234 3.73231 3.86375 3.96730 4.12445 4.26980 4.36965 4.37734 4.44396 4.51638 4.55948 4.60934 4.86762 4.91185 4.96458 5.06398 5.10081 5.18968 5.31448 5.35332 5.44590 5.53985 5.60629 5.74844 5.80453 5.91579 6.00539 6.09268 6.27850 6.40007 6.82890 7.43700 8.92559 Molecular weight = 315.11amu Principal moments of inertia in cm(-1) A = 0.019568 B = 0.003891 C = 0.003781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1430.541422 B = 7194.909006 C = 7404.591790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.461 5.461 2 C 0.273 3.727 3 C -0.095 4.095 4 C -0.018 4.018 5 C -0.145 4.145 6 C -0.031 4.031 7 C -0.192 4.192 8 C 0.231 3.769 9 N -0.688 5.688 10 C 0.583 3.417 11 S -0.688 6.688 12 N -0.488 5.488 13 C 0.078 3.922 14 C -0.124 4.124 15 C -0.110 4.110 16 C 0.045 3.955 17 H -0.011 1.011 18 C -0.541 4.541 19 H 0.065 0.935 20 C 0.019 3.981 21 N -0.896 5.896 22 Si 0.951 3.049 23 H -0.272 1.272 24 H -0.293 1.293 25 H -0.266 1.266 26 C 0.084 3.916 27 H 0.164 0.836 28 H 0.172 0.828 29 H 0.158 0.842 30 H 0.107 0.893 31 H 0.422 0.578 32 H 0.102 0.898 33 H 0.112 0.888 34 H 0.050 0.950 35 H 0.114 0.886 36 H 0.059 0.941 37 H 0.068 0.932 38 H 0.261 0.739 39 H 0.066 0.934 40 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.803 16.937 -15.529 23.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.138 5.138 2 C -0.041 4.041 3 C -0.104 4.104 4 C -0.038 4.038 5 C -0.164 4.164 6 C -0.050 4.050 7 C -0.215 4.215 8 C 0.127 3.873 9 N -0.323 5.323 10 C 0.228 3.772 11 S -0.555 6.555 12 N -0.182 5.182 13 C -0.046 4.046 14 C -0.162 4.162 15 C -0.148 4.148 16 C 0.026 3.974 17 H 0.007 0.993 18 C -0.579 4.579 19 H 0.083 0.917 20 C -0.183 4.183 21 N -0.532 5.532 22 Si 0.777 3.223 23 H -0.197 1.197 24 H -0.219 1.219 25 H -0.191 1.191 26 C -0.037 4.037 27 H 0.182 0.818 28 H 0.190 0.810 29 H 0.175 0.825 30 H 0.125 0.875 31 H 0.264 0.736 32 H 0.120 0.880 33 H 0.130 0.870 34 H 0.068 0.932 35 H 0.132 0.868 36 H 0.077 0.923 37 H 0.086 0.914 38 H 0.070 0.930 39 H 0.084 0.916 40 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 2.382 15.766 -15.238 22.055 hybrid contribution -0.079 -0.578 1.250 1.380 sum 2.303 15.187 -13.988 20.775 Atomic orbital electron populations 1.81316 1.13093 1.10434 1.08928 1.25809 0.92731 0.92567 0.92973 1.15568 0.83215 1.10276 1.01296 1.21368 0.94835 0.93250 0.94381 1.21382 0.93050 1.01675 1.00290 1.21506 1.01753 0.91065 0.90704 1.20769 0.90766 1.06425 1.03551 1.17843 0.91940 0.90551 0.86932 1.41733 1.09673 1.59395 1.21530 1.21605 0.81955 0.91957 0.81711 1.93567 1.73086 0.99964 1.88845 1.49358 1.44994 1.08989 1.14908 1.22599 1.04045 0.77134 1.00809 1.21925 0.98446 1.02740 0.93081 1.21609 1.00299 0.95506 0.97342 1.18880 0.94273 0.92580 0.91676 0.99293 1.21313 1.37588 0.91843 1.07174 0.91670 1.25809 0.96094 0.97526 0.98866 1.70034 1.44728 1.02356 1.36126 0.85718 0.79583 0.76794 0.80226 1.19704 1.21854 1.19092 1.23144 0.94963 1.04641 0.80988 0.81816 0.81027 0.82460 0.87531 0.73554 0.87962 0.87003 0.93162 0.86784 0.92272 0.91369 0.93000 0.91552 0.84929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -12.40 18.54 19.00 0.35 -12.05 16 2 C 0.27 6.00 14.10 88.33 1.25 7.25 16 3 C -0.10 -1.68 5.75 -21.17 -0.12 -1.80 16 4 C -0.02 -0.18 9.75 22.53 0.22 0.04 16 5 C -0.14 -1.12 10.02 22.25 0.22 -0.89 16 6 C -0.03 -0.38 10.03 22.30 0.22 -0.15 16 7 C -0.19 -3.96 9.12 22.36 0.20 -3.76 16 8 C 0.23 5.14 5.36 38.59 0.21 5.35 16 9 N -0.69 -19.67 4.19 -189.37 -0.79 -20.46 16 10 C 0.58 21.38 5.39 179.05 0.96 22.34 16 11 S -0.69 -33.33 28.67 -56.49 -1.62 -34.95 16 12 N -0.49 -16.96 2.97 -706.74 -2.10 -19.06 16 13 C 0.08 1.91 6.05 86.36 0.52 2.43 16 14 C -0.12 -3.16 6.08 30.67 0.19 -2.97 16 15 C -0.11 -3.70 5.11 30.62 0.16 -3.54 16 16 C 0.05 2.08 2.25 -11.46 -0.03 2.05 16 17 H -0.01 -0.60 8.14 -2.38 -0.02 -0.62 16 18 C -0.54 -27.65 8.56 25.60 0.22 -27.43 16 19 H 0.07 3.20 7.74 -2.91 -0.02 3.17 16 20 C 0.02 1.01 5.30 84.65 0.45 1.46 16 21 N -0.90 -51.90 11.40 21.45 0.24 -51.65 16 22 Si 0.95 42.55 29.54 68.60 2.03 44.58 16 23 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 24 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 25 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 26 C 0.08 3.73 5.28 86.35 0.46 4.18 16 27 H 0.16 0.79 8.06 -2.91 -0.02 0.77 16 28 H 0.17 0.14 8.06 -2.91 -0.02 0.12 16 29 H 0.16 1.16 8.06 -2.91 -0.02 1.14 16 30 H 0.11 2.82 7.01 -2.91 -0.02 2.80 16 31 H 0.42 11.95 7.68 -92.71 -0.71 11.24 16 32 H 0.10 2.12 6.07 -2.39 -0.01 2.10 16 33 H 0.11 2.24 8.14 -2.39 -0.02 2.22 16 34 H 0.05 1.44 8.14 -2.38 -0.02 1.42 16 35 H 0.11 2.03 8.14 -2.39 -0.02 2.02 16 36 H 0.06 1.99 8.14 -2.38 -0.02 1.97 16 37 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 38 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 39 H 0.07 2.87 8.14 -2.39 -0.02 2.85 16 40 H 0.13 7.03 4.12 -3.26 -0.01 7.02 16 Total: -1.00 -72.57 346.88 3.60 -68.97 By element: Atomic # 1 Polarization: 19.72 SS G_CDS: 0.36 Total: 20.08 kcal Atomic # 6 Polarization: -0.58 SS G_CDS: 5.13 Total: 4.55 kcal Atomic # 7 Polarization: -100.93 SS G_CDS: -2.30 Total: -103.23 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.58 kcal Atomic # 16 Polarization: -33.33 SS G_CDS: -1.62 Total: -34.95 kcal Total: -72.57 3.60 -68.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849272175.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.623 kcal (2) G-P(sol) polarization free energy of solvation -72.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.969 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds