Wall clock time and date at job start Fri Apr 10 2020 23:07:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13594 * 1 3 3 C 1.43208 * 179.97438 * 2 1 4 4 C 1.39698 * 120.20119 * 350.72901 * 3 2 1 5 5 C 1.37820 * 119.91456 * 179.97438 * 4 3 2 6 6 C 1.38549 * 120.33289 * 0.02562 * 5 4 3 7 7 C 1.38047 * 120.40677 * 359.67734 * 6 5 4 8 8 C 1.38818 * 120.07600 * 0.59945 * 7 6 5 9 9 N 1.39337 * 120.16540 * 179.69997 * 8 7 6 10 10 C 1.34780 * 119.99732 * 318.15483 * 9 8 7 11 11 S 1.71198 * 120.00055 * 5.17720 * 10 9 8 12 12 N 1.34781 * 119.99772 * 185.18018 * 10 9 8 13 13 C 1.46928 * 120.62996 * 354.78444 * 12 10 9 14 14 C 1.53194 * 108.77244 * 233.58784 * 13 12 10 15 15 C 1.53040 * 109.31139 * 305.36231 * 14 13 12 16 16 C 1.53043 * 109.53973 * 61.36567 * 15 14 13 17 17 H 1.09004 * 109.49219 * 58.58911 * 16 15 14 18 18 C 1.50701 * 109.50103 * 178.68216 * 16 15 14 19 19 H 1.08005 * 119.99792 * 0.02562 * 18 16 15 20 20 C 1.37869 * 120.00093 * 180.02562 * 18 16 15 21 21 N 1.31521 * 120.00177 * 359.97438 * 20 18 16 22 22 Si 1.86800 * 120.00189 * 180.02562 * 20 18 16 23 23 H 1.48508 * 109.46867 * 359.97438 * 22 20 18 24 24 H 1.48493 * 109.47428 * 119.99502 * 22 20 18 25 25 H 1.48503 * 109.47008 * 240.00034 * 22 20 18 26 26 C 1.46921 * 120.63064 * 174.75960 * 12 10 9 27 27 H 1.08003 * 120.04712 * 359.95312 * 4 3 2 28 28 H 1.08007 * 119.83295 * 179.97438 * 5 4 3 29 29 H 1.07999 * 119.79223 * 179.97438 * 6 5 4 30 30 H 1.08003 * 119.96273 * 180.32081 * 7 6 5 31 31 H 0.96996 * 120.00244 * 138.14523 * 9 8 7 32 32 H 1.08999 * 109.58553 * 113.79701 * 13 12 10 33 33 H 1.08997 * 109.70430 * 353.43948 * 13 12 10 34 34 H 1.08998 * 109.49727 * 185.41379 * 14 13 12 35 35 H 1.08993 * 109.52762 * 65.33081 * 14 13 12 36 36 H 1.09001 * 109.46434 * 181.39045 * 15 14 13 37 37 H 1.09002 * 109.46074 * 301.35063 * 15 14 13 38 38 H 0.97002 * 119.99858 * 180.02562 * 21 20 18 39 39 H 1.08999 * 109.58692 * 246.20405 * 26 12 10 40 40 H 1.09007 * 109.58827 * 6.48088 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2713 -1.1906 0.1945 5 6 4.6495 -1.1833 0.1929 6 6 5.3427 0.0006 -0.0003 7 6 4.6614 1.1846 -0.1999 8 6 3.2733 1.1977 -0.1958 9 7 2.5838 2.3927 -0.3908 10 6 3.0094 3.5220 0.2094 11 16 4.4698 3.5183 1.1028 12 7 2.2853 4.6540 0.1061 13 6 1.0917 4.7038 -0.7491 14 6 1.2275 5.8835 -1.7170 15 6 1.4838 7.1648 -0.9203 16 6 2.7923 7.0283 -0.1385 17 1 3.6119 6.8378 -0.8314 18 6 3.0603 8.3026 0.6202 19 1 2.3666 9.1276 0.5521 20 6 4.1910 8.4152 1.4010 21 7 5.0355 7.4104 1.4842 22 14 4.5228 9.9944 2.3419 23 1 3.4287 10.9645 2.0823 24 1 4.5890 9.6998 3.7958 25 1 5.8147 10.5748 1.8951 26 6 2.6743 5.8616 0.8471 27 1 2.7358 -2.1162 0.3463 28 1 5.1919 -2.1050 0.3438 29 1 6.4226 -0.0036 0.0004 30 1 5.2090 2.1025 -0.3550 31 1 1.7976 2.4119 -0.9585 32 1 0.2044 4.8388 -0.1306 33 1 1.0055 3.7757 -1.3142 34 1 0.3075 5.9903 -2.2917 35 1 2.0615 5.7040 -2.3954 36 1 1.5563 8.0098 -1.6050 37 1 0.6610 7.3307 -0.2249 38 1 5.8308 7.4896 2.0339 39 1 1.9160 6.0910 1.5958 40 1 3.6337 5.6963 1.3376 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000849272176.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:07:06 Heat of formation + Delta-G solvation = 85.912147 kcal Electronic energy + Delta-G solvation = -23508.887180 eV Core-core repulsion = 20222.216896 eV Total energy + Delta-G solvation = -3286.670284 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.110 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.48461 -39.04242 -36.60819 -36.42603 -33.62609 -32.59149 -31.43008 -30.25338 -29.57803 -25.98698 -25.28446 -24.05071 -22.77150 -22.59138 -21.04262 -19.72259 -19.02296 -18.00893 -17.57043 -16.42924 -15.65732 -15.59108 -15.12560 -14.58534 -14.48687 -14.32436 -14.10197 -13.96056 -13.68636 -13.30555 -13.15140 -12.95732 -12.78878 -12.65859 -12.20274 -11.96767 -11.73585 -11.41848 -11.24515 -11.01876 -10.73874 -10.63372 -10.52261 -10.40989 -10.17717 -9.45939 -9.28960 -9.10304 -9.04059 -8.49718 -8.16338 -7.18901 -6.38856 -6.01558 -4.13732 0.59864 1.20800 1.85044 2.27479 2.46236 2.86849 2.93006 3.28464 3.37337 3.39528 3.40542 3.69755 3.83183 4.39685 4.70648 4.76483 4.93116 5.04620 5.14870 5.23722 5.25976 5.30321 5.43406 5.61851 5.76965 5.80806 6.02126 6.06983 6.12526 6.23856 6.35131 6.37290 6.51146 6.53640 6.67815 6.75514 6.85969 7.00360 7.19307 7.29665 7.39755 7.66172 7.77741 7.99959 8.28334 8.88437 9.52559 11.01475 Molecular weight = 315.11amu Principal moments of inertia in cm(-1) A = 0.018211 B = 0.004054 C = 0.003493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1537.126483 B = 6904.796073 C = 8014.068661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.423 5.423 2 C 0.256 3.744 3 C -0.054 4.054 4 C -0.073 4.073 5 C -0.124 4.124 6 C -0.084 4.084 7 C -0.078 4.078 8 C 0.191 3.809 9 N -0.653 5.653 10 C 0.544 3.456 11 S -0.601 6.601 12 N -0.539 5.539 13 C 0.091 3.909 14 C -0.131 4.131 15 C -0.115 4.115 16 C 0.046 3.954 17 H 0.033 0.967 18 C -0.530 4.530 19 H 0.059 0.941 20 C 0.067 3.933 21 N -0.861 5.861 22 Si 0.890 3.110 23 H -0.275 1.275 24 H -0.283 1.283 25 H -0.283 1.283 26 C 0.089 3.911 27 H 0.131 0.869 28 H 0.131 0.869 29 H 0.133 0.867 30 H 0.170 0.830 31 H 0.401 0.599 32 H 0.080 0.920 33 H 0.063 0.937 34 H 0.068 0.932 35 H 0.065 0.935 36 H 0.058 0.942 37 H 0.052 0.948 38 H 0.266 0.734 39 H 0.056 0.944 40 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.205 -14.771 -6.388 16.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.099 5.099 2 C -0.059 4.059 3 C -0.061 4.061 4 C -0.095 4.095 5 C -0.143 4.143 6 C -0.105 4.105 7 C -0.102 4.102 8 C 0.092 3.908 9 N -0.283 5.283 10 C 0.187 3.813 11 S -0.464 6.464 12 N -0.242 5.242 13 C -0.035 4.035 14 C -0.169 4.169 15 C -0.153 4.153 16 C 0.027 3.973 17 H 0.051 0.949 18 C -0.569 4.569 19 H 0.078 0.922 20 C -0.138 4.138 21 N -0.496 5.496 22 Si 0.718 3.282 23 H -0.199 1.199 24 H -0.209 1.209 25 H -0.209 1.209 26 C -0.030 4.030 27 H 0.149 0.851 28 H 0.149 0.851 29 H 0.151 0.849 30 H 0.187 0.813 31 H 0.241 0.759 32 H 0.098 0.902 33 H 0.081 0.919 34 H 0.086 0.914 35 H 0.084 0.916 36 H 0.077 0.923 37 H 0.071 0.929 38 H 0.076 0.924 39 H 0.074 0.926 40 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -3.940 -14.549 -5.653 16.098 hybrid contribution -0.744 0.825 -0.135 1.119 sum -4.684 -13.724 -5.788 15.614 Atomic orbital electron populations 1.81249 1.11928 1.07266 1.09445 1.25737 0.92720 0.93837 0.93585 1.15881 0.83959 0.94748 1.11467 1.20823 0.94341 0.95552 0.98762 1.21074 0.93386 0.98744 1.01129 1.21262 1.00648 0.91318 0.97311 1.21995 0.91929 1.00321 0.95946 1.17336 0.91581 0.82370 0.99517 1.42278 1.31025 1.05970 1.49058 1.22611 0.92152 0.81405 0.85128 1.93310 1.10030 1.90244 1.52769 1.48218 1.23448 1.10927 1.41655 1.21993 0.88524 0.99238 0.93709 1.21943 1.01710 0.95746 0.97515 1.21710 1.00507 0.94588 0.98453 1.18957 0.91788 0.93148 0.93450 0.94869 1.20962 1.07575 0.98781 1.29559 0.92248 1.25065 0.95953 0.96378 0.96444 1.69894 1.11785 1.29713 1.38246 0.86574 0.78181 0.83625 0.79869 1.19923 1.20883 1.20937 1.23440 1.05631 0.78966 0.94989 0.85088 0.85147 0.84870 0.81255 0.75893 0.90166 0.91856 0.91353 0.91647 0.92288 0.92905 0.92371 0.92615 0.81685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -6.03 18.54 41.84 0.78 -5.26 16 2 C 0.26 3.23 14.53 -22.47 -0.33 2.91 16 3 C -0.05 -0.61 5.75 -106.64 -0.61 -1.23 16 4 C -0.07 -0.65 9.75 -39.19 -0.38 -1.03 16 5 C -0.12 -1.02 10.02 -39.62 -0.40 -1.42 16 6 C -0.08 -0.84 10.03 -39.54 -0.40 -1.23 16 7 C -0.08 -1.02 7.86 -39.44 -0.31 -1.33 16 8 C 0.19 2.52 6.04 -83.46 -0.50 2.01 16 9 N -0.65 -9.30 4.81 -11.20 -0.05 -9.36 16 10 C 0.54 9.84 7.59 -86.91 -0.66 9.18 16 11 S -0.60 -12.97 23.74 -107.50 -2.55 -15.52 16 12 N -0.54 -9.81 2.97 -174.79 -0.52 -10.33 16 13 C 0.09 1.29 6.38 -3.71 -0.02 1.26 16 14 C -0.13 -1.89 6.08 -26.61 -0.16 -2.05 16 15 C -0.11 -2.09 5.11 -26.69 -0.14 -2.23 16 16 C 0.05 1.05 2.25 -91.65 -0.21 0.85 16 17 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 18 C -0.53 -13.63 8.56 -34.44 -0.29 -13.93 16 19 H 0.06 1.51 7.74 -52.48 -0.41 1.11 16 20 C 0.07 1.76 5.30 -17.82 -0.09 1.67 16 21 N -0.86 -23.81 11.40 55.43 0.63 -23.18 16 22 Si 0.89 20.59 29.54 -169.99 -5.02 15.57 16 23 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 24 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 25 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 26 C 0.09 1.98 5.31 -3.72 -0.02 1.96 16 27 H 0.13 0.88 8.06 -52.48 -0.42 0.45 16 28 H 0.13 0.70 8.06 -52.48 -0.42 0.28 16 29 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 30 H 0.17 2.65 5.64 -34.15 -0.19 2.46 16 31 H 0.40 4.88 5.87 -40.82 -0.24 4.64 16 32 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 33 H 0.06 0.72 5.65 -51.93 -0.29 0.43 16 34 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 35 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 39 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 40 H 0.17 4.22 4.06 -49.61 -0.20 4.02 16 LS Contribution 341.33 15.07 5.14 5.14 Total: -1.00 -30.06 341.33 -10.82 -40.87 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: -4.70 Total: 6.66 kcal Atomic # 6 Polarization: -0.07 SS G_CDS: -4.53 Total: -4.60 kcal Atomic # 7 Polarization: -48.96 SS G_CDS: 0.83 Total: -48.12 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Atomic # 16 Polarization: -12.97 SS G_CDS: -2.55 Total: -15.52 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -30.06 -10.82 -40.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849272176.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.786 kcal (2) G-P(sol) polarization free energy of solvation -30.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.874 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds