Wall clock time and date at job start Fri Apr 10 2020 23:07:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13594 * 1 3 3 C 1.43208 * 179.97438 * 2 1 4 4 C 1.39698 * 120.20119 * 350.72901 * 3 2 1 5 5 C 1.37820 * 119.91456 * 179.97438 * 4 3 2 6 6 C 1.38549 * 120.33289 * 0.02562 * 5 4 3 7 7 C 1.38047 * 120.40677 * 359.67734 * 6 5 4 8 8 C 1.38818 * 120.07600 * 0.59945 * 7 6 5 9 9 N 1.39337 * 120.16540 * 179.69997 * 8 7 6 10 10 C 1.34780 * 119.99732 * 318.15483 * 9 8 7 11 11 S 1.71198 * 120.00055 * 5.17720 * 10 9 8 12 12 N 1.34781 * 119.99772 * 185.18018 * 10 9 8 13 13 C 1.46928 * 120.62996 * 354.78444 * 12 10 9 14 14 C 1.53194 * 108.77244 * 233.58784 * 13 12 10 15 15 C 1.53040 * 109.31139 * 305.36231 * 14 13 12 16 16 C 1.53043 * 109.53973 * 61.36567 * 15 14 13 17 17 H 1.09004 * 109.49219 * 58.58911 * 16 15 14 18 18 C 1.50701 * 109.50103 * 178.68216 * 16 15 14 19 19 H 1.08005 * 119.99792 * 0.02562 * 18 16 15 20 20 C 1.37869 * 120.00093 * 180.02562 * 18 16 15 21 21 N 1.31521 * 120.00177 * 359.97438 * 20 18 16 22 22 Si 1.86800 * 120.00189 * 180.02562 * 20 18 16 23 23 H 1.48508 * 109.46867 * 359.97438 * 22 20 18 24 24 H 1.48493 * 109.47428 * 119.99502 * 22 20 18 25 25 H 1.48503 * 109.47008 * 240.00034 * 22 20 18 26 26 C 1.46921 * 120.63064 * 174.75960 * 12 10 9 27 27 H 1.08003 * 120.04712 * 359.95312 * 4 3 2 28 28 H 1.08007 * 119.83295 * 179.97438 * 5 4 3 29 29 H 1.07999 * 119.79223 * 179.97438 * 6 5 4 30 30 H 1.08003 * 119.96273 * 180.32081 * 7 6 5 31 31 H 0.96996 * 120.00244 * 138.14523 * 9 8 7 32 32 H 1.08999 * 109.58553 * 113.79701 * 13 12 10 33 33 H 1.08997 * 109.70430 * 353.43948 * 13 12 10 34 34 H 1.08998 * 109.49727 * 185.41379 * 14 13 12 35 35 H 1.08993 * 109.52762 * 65.33081 * 14 13 12 36 36 H 1.09001 * 109.46434 * 181.39045 * 15 14 13 37 37 H 1.09002 * 109.46074 * 301.35063 * 15 14 13 38 38 H 0.97002 * 119.99858 * 180.02562 * 21 20 18 39 39 H 1.08999 * 109.58692 * 246.20405 * 26 12 10 40 40 H 1.09007 * 109.58827 * 6.48088 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2713 -1.1906 0.1945 5 6 4.6495 -1.1833 0.1929 6 6 5.3427 0.0006 -0.0003 7 6 4.6614 1.1846 -0.1999 8 6 3.2733 1.1977 -0.1958 9 7 2.5838 2.3927 -0.3908 10 6 3.0094 3.5220 0.2094 11 16 4.4698 3.5183 1.1028 12 7 2.2853 4.6540 0.1061 13 6 1.0917 4.7038 -0.7491 14 6 1.2275 5.8835 -1.7170 15 6 1.4838 7.1648 -0.9203 16 6 2.7923 7.0283 -0.1385 17 1 3.6119 6.8378 -0.8314 18 6 3.0603 8.3026 0.6202 19 1 2.3666 9.1276 0.5521 20 6 4.1910 8.4152 1.4010 21 7 5.0355 7.4104 1.4842 22 14 4.5228 9.9944 2.3419 23 1 3.4287 10.9645 2.0823 24 1 4.5890 9.6998 3.7958 25 1 5.8147 10.5748 1.8951 26 6 2.6743 5.8616 0.8471 27 1 2.7358 -2.1162 0.3463 28 1 5.1919 -2.1050 0.3438 29 1 6.4226 -0.0036 0.0004 30 1 5.2090 2.1025 -0.3550 31 1 1.7976 2.4119 -0.9585 32 1 0.2044 4.8388 -0.1306 33 1 1.0055 3.7757 -1.3142 34 1 0.3075 5.9903 -2.2917 35 1 2.0615 5.7040 -2.3954 36 1 1.5563 8.0098 -1.6050 37 1 0.6610 7.3307 -0.2249 38 1 5.8308 7.4896 2.0339 39 1 1.9160 6.0910 1.5958 40 1 3.6337 5.6963 1.3376 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000849272176.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:07:06 Heat of formation + Delta-G solvation = 70.611398 kcal Electronic energy + Delta-G solvation = -23509.550670 eV Core-core repulsion = 20222.216896 eV Total energy + Delta-G solvation = -3287.333774 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.110 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.64547 -40.26995 -37.80457 -37.50419 -35.27882 -34.10258 -32.32187 -31.86777 -30.65207 -27.39887 -27.07123 -25.00542 -24.11402 -23.88524 -22.35996 -21.06546 -20.23534 -19.24958 -18.68721 -18.30392 -17.08966 -16.61181 -16.42563 -16.14636 -15.69351 -15.63339 -15.21991 -15.12985 -14.91807 -14.63452 -14.40895 -14.22272 -14.06236 -13.83620 -13.70421 -13.00786 -12.92424 -12.83468 -12.57277 -12.38079 -12.33890 -12.28547 -12.07565 -12.00074 -11.72859 -11.08289 -10.96364 -10.65519 -10.43199 -9.94643 -9.31585 -8.80562 -8.04239 -7.95268 -6.21901 -0.36951 0.20176 0.63006 0.87118 1.41742 1.45753 1.46997 1.54476 1.55631 1.92985 2.11416 2.45822 2.75730 2.94701 3.22776 3.60031 3.81932 3.93228 4.03844 4.19820 4.25672 4.38817 4.48956 4.49759 4.57994 4.61843 4.64539 4.91690 4.95582 5.04494 5.11228 5.17505 5.22625 5.31833 5.40694 5.51212 5.63289 5.66271 5.71664 5.87862 5.95760 6.08201 6.25966 6.32484 6.34214 6.87535 7.47680 8.97348 Molecular weight = 315.11amu Principal moments of inertia in cm(-1) A = 0.018211 B = 0.004054 C = 0.003493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1537.126483 B = 6904.796073 C = 8014.068661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C 0.272 3.728 3 C -0.055 4.055 4 C -0.060 4.060 5 C -0.106 4.106 6 C -0.080 4.080 7 C -0.096 4.096 8 C 0.161 3.839 9 N -0.631 5.631 10 C 0.562 3.438 11 S -0.685 6.685 12 N -0.543 5.543 13 C 0.086 3.914 14 C -0.122 4.122 15 C -0.110 4.110 16 C 0.046 3.954 17 H -0.007 1.007 18 C -0.543 4.543 19 H 0.059 0.941 20 C 0.020 3.980 21 N -0.889 5.889 22 Si 0.948 3.052 23 H -0.265 1.265 24 H -0.285 1.285 25 H -0.284 1.284 26 C 0.100 3.900 27 H 0.164 0.836 28 H 0.172 0.828 29 H 0.151 0.849 30 H 0.137 0.863 31 H 0.413 0.587 32 H 0.097 0.903 33 H 0.096 0.904 34 H 0.111 0.889 35 H 0.057 0.943 36 H 0.058 0.942 37 H 0.059 0.941 38 H 0.260 0.740 39 H 0.047 0.953 40 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.862 -17.094 -7.297 19.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.128 5.128 2 C -0.043 4.043 3 C -0.061 4.061 4 C -0.081 4.081 5 C -0.124 4.124 6 C -0.101 4.101 7 C -0.120 4.120 8 C 0.064 3.936 9 N -0.261 5.261 10 C 0.202 3.798 11 S -0.550 6.550 12 N -0.247 5.247 13 C -0.038 4.038 14 C -0.160 4.160 15 C -0.148 4.148 16 C 0.027 3.973 17 H 0.011 0.989 18 C -0.582 4.582 19 H 0.078 0.922 20 C -0.182 4.182 21 N -0.525 5.525 22 Si 0.775 3.225 23 H -0.189 1.189 24 H -0.211 1.211 25 H -0.210 1.210 26 C -0.021 4.021 27 H 0.181 0.819 28 H 0.189 0.811 29 H 0.169 0.831 30 H 0.155 0.845 31 H 0.255 0.745 32 H 0.115 0.885 33 H 0.114 0.886 34 H 0.129 0.871 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.069 0.931 39 H 0.065 0.935 40 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -5.637 -16.933 -6.613 19.032 hybrid contribution -0.213 1.398 0.076 1.416 sum -5.850 -15.535 -6.537 17.841 Atomic orbital electron populations 1.81272 1.12731 1.08178 1.10600 1.25827 0.92729 0.92998 0.92702 1.15945 0.83385 0.94862 1.11927 1.21287 0.94804 0.95634 0.96404 1.21509 0.93198 0.99341 0.98371 1.21549 1.01734 0.90942 0.95908 1.21761 0.92063 1.00519 0.97646 1.17498 0.91782 0.82271 1.02026 1.42116 1.30917 1.05232 1.47834 1.22077 0.90773 0.82375 0.84568 1.93432 1.13820 1.91486 1.56295 1.48014 1.24694 1.09865 1.42087 1.22344 0.87084 1.00844 0.93574 1.21892 1.03494 0.93527 0.97071 1.21586 0.97806 0.96922 0.98449 1.18842 0.93070 0.92418 0.93018 0.98875 1.21358 1.07409 0.99994 1.29406 0.92248 1.25779 0.96039 0.98947 0.97467 1.70078 1.12027 1.31382 1.39033 0.85656 0.78019 0.80518 0.78345 1.18923 1.21068 1.20995 1.22846 1.03965 0.80483 0.94838 0.81857 0.81058 0.83132 0.84517 0.74466 0.88454 0.88575 0.87050 0.92425 0.92341 0.92260 0.93052 0.93453 0.84737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -11.94 18.54 19.01 0.35 -11.59 16 2 C 0.27 6.23 14.53 88.33 1.28 7.51 16 3 C -0.05 -1.12 5.75 -21.17 -0.12 -1.24 16 4 C -0.06 -0.83 9.75 22.52 0.22 -0.61 16 5 C -0.11 -1.30 10.02 22.24 0.22 -1.07 16 6 C -0.08 -1.46 10.03 22.30 0.22 -1.23 16 7 C -0.10 -2.53 7.86 22.36 0.18 -2.36 16 8 C 0.16 4.14 6.04 38.59 0.23 4.37 16 9 N -0.63 -17.63 4.81 -189.36 -0.91 -18.55 16 10 C 0.56 20.82 7.59 179.05 1.36 22.18 16 11 S -0.69 -31.46 23.74 -56.49 -1.34 -32.80 16 12 N -0.54 -19.94 2.97 -706.91 -2.10 -22.04 16 13 C 0.09 2.22 6.38 86.36 0.55 2.78 16 14 C -0.12 -3.23 6.08 30.67 0.19 -3.04 16 15 C -0.11 -3.92 5.11 30.62 0.16 -3.77 16 16 C 0.05 2.18 2.25 -11.46 -0.03 2.15 16 17 H -0.01 -0.38 8.14 -2.38 -0.02 -0.40 16 18 C -0.54 -28.71 8.56 25.60 0.22 -28.49 16 19 H 0.06 3.06 7.74 -2.91 -0.02 3.04 16 20 C 0.02 1.08 5.30 84.65 0.45 1.53 16 21 N -0.89 -51.72 11.40 21.45 0.24 -51.47 16 22 Si 0.95 43.39 29.54 68.60 2.03 45.41 16 23 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 24 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 25 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16 26 C 0.10 4.64 5.31 86.36 0.46 5.10 16 27 H 0.16 1.29 8.06 -2.91 -0.02 1.27 16 28 H 0.17 0.82 8.06 -2.91 -0.02 0.80 16 29 H 0.15 2.14 8.06 -2.91 -0.02 2.12 16 30 H 0.14 4.59 5.64 -14.57 -0.08 4.51 16 31 H 0.41 9.31 5.87 -92.71 -0.54 8.77 16 32 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16 33 H 0.10 1.88 5.65 -2.39 -0.01 1.86 16 34 H 0.11 2.10 8.14 -2.39 -0.02 2.08 16 35 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.06 2.06 8.14 -2.39 -0.02 2.05 16 37 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 38 H 0.26 14.81 8.31 -92.71 -0.77 14.04 16 39 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 40 H 0.14 7.29 4.06 -3.86 -0.02 7.28 16 Total: -1.00 -71.46 341.33 4.33 -67.13 By element: Atomic # 1 Polarization: 19.63 SS G_CDS: 0.47 Total: 20.10 kcal Atomic # 6 Polarization: -1.78 SS G_CDS: 5.59 Total: 3.81 kcal Atomic # 7 Polarization: -101.23 SS G_CDS: -2.42 Total: -103.65 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.41 kcal Atomic # 16 Polarization: -31.46 SS G_CDS: -1.34 Total: -32.80 kcal Total: -71.46 4.33 -67.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849272176.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.740 kcal (2) G-P(sol) polarization free energy of solvation -71.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.129 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds