Wall clock time and date at job start Fri Apr 10 2020 23:07:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86804 * 120.00166 * 2 1 4 4 H 1.48498 * 109.47158 * 274.86051 * 3 2 1 5 5 H 1.48504 * 109.46694 * 34.85514 * 3 2 1 6 6 H 1.48493 * 109.47432 * 154.85683 * 3 2 1 7 7 C 1.37877 * 120.00295 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00436 * 158.97502 * 7 2 1 9 9 C 1.50700 * 119.99722 * 338.97399 * 7 2 1 10 10 C 1.53008 * 115.55138 * 324.12475 * 9 7 2 11 11 N 1.46505 * 109.46898 * 279.43732 * 10 9 7 12 12 C 1.39674 * 119.99345 * 177.20091 * 11 10 9 13 13 C 1.38925 * 120.07948 * 358.91547 * 12 11 10 14 14 C 1.38081 * 119.92677 * 179.97438 * 13 12 11 15 15 C 1.38307 * 120.07611 * 359.97438 * 14 13 12 16 16 C 1.38268 * 120.14636 * 0.02801 * 15 14 13 17 17 C 1.38126 * 120.07604 * 359.74216 * 16 15 14 18 18 C 1.50700 * 120.03919 * 180.27653 * 17 16 15 19 19 H 1.08998 * 109.47178 * 213.37442 * 18 17 16 20 20 O 1.42903 * 109.46956 * 333.37750 * 18 17 16 21 21 C 1.53002 * 109.47063 * 93.37437 * 18 17 16 22 22 F 1.39898 * 109.47291 * 54.84870 * 21 18 17 23 23 F 1.39895 * 109.47365 * 174.85079 * 21 18 17 24 24 F 1.39906 * 109.47089 * 294.84984 * 21 18 17 25 25 C 1.53001 * 117.51944 * 109.82826 * 9 7 2 26 26 C 1.53002 * 60.00132 * 107.48202 * 25 9 7 27 27 H 0.96998 * 120.00407 * 5.24589 * 1 2 3 28 28 H 1.08992 * 109.46769 * 159.43433 * 10 9 7 29 29 H 1.09002 * 109.46733 * 39.43115 * 10 9 7 30 30 H 0.96991 * 120.00181 * 356.91973 * 11 10 9 31 31 H 1.08004 * 120.03957 * 359.97438 * 13 12 11 32 32 H 1.07998 * 119.96069 * 180.02562 * 14 13 12 33 33 H 1.08000 * 119.92832 * 180.02562 * 15 14 13 34 34 H 1.08000 * 119.95796 * 179.97438 * 16 15 14 35 35 H 0.96701 * 114.00148 * 59.99728 * 20 18 17 36 36 H 1.09002 * 117.49504 * 214.97115 * 25 9 7 37 37 H 1.08997 * 117.49917 * 359.97438 * 25 9 7 38 38 H 1.08997 * 117.49511 * 252.51623 * 26 25 9 39 39 H 1.08996 * 117.52177 * 107.48248 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.3939 2.1057 -1.3950 5 1 1.5016 2.6209 0.8002 6 1 3.5942 1.4128 0.5948 7 6 2.0045 -1.1940 -0.0005 8 1 3.0305 -1.2250 -0.3361 9 6 1.3263 -2.4559 0.4672 10 6 0.3441 -2.2859 1.6281 11 7 1.0858 -2.2242 2.8900 12 6 0.4044 -2.0117 4.0907 13 6 -0.9737 -1.8362 4.0875 14 6 -1.6442 -1.6268 5.2764 15 6 -0.9454 -1.5923 6.4694 16 6 0.4262 -1.7667 6.4761 17 6 1.1025 -1.9812 5.2910 18 6 2.5967 -2.1773 5.2999 19 1 3.0238 -1.7566 4.3896 20 8 3.1568 -1.5185 6.4376 21 6 2.9144 -3.6724 5.3687 22 9 2.2684 -4.3352 4.3197 23 9 4.2963 -3.8611 5.2588 24 9 2.4691 -4.1881 6.5907 25 6 0.9968 -3.5140 -0.5877 26 6 2.1328 -3.7548 0.4087 27 1 -0.4850 0.8365 -0.0768 28 1 -0.3417 -3.1326 1.6506 29 1 -0.2212 -1.3637 1.4935 30 1 2.0493 -2.3351 2.8922 31 1 -1.5201 -1.8634 3.1563 32 1 -2.7155 -1.4907 5.2746 33 1 -1.4722 -1.4289 7.3979 34 1 0.9689 -1.7388 7.4095 35 1 2.8213 -1.8429 7.2846 36 1 0.0804 -4.0890 -0.4546 37 1 1.2702 -3.2975 -1.6203 38 1 3.1537 -3.6966 0.0315 39 1 1.9640 -4.4880 1.1973 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000849315848.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:07:08 Heat of formation + Delta-G solvation = -147.305340 kcal Electronic energy + Delta-G solvation = -27741.552267 eV Core-core repulsion = 23427.866552 eV Total energy + Delta-G solvation = -4313.685715 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.119 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -50.02530 -47.56326 -47.47421 -39.68163 -37.35321 -36.78809 -34.24618 -32.34016 -31.54587 -29.24123 -28.00639 -25.92593 -25.07008 -23.80464 -21.51805 -21.32106 -20.93156 -19.23272 -18.76124 -18.51696 -18.23117 -17.38486 -16.61890 -15.99964 -15.47852 -14.83297 -14.54164 -14.38464 -14.33137 -14.15401 -13.93308 -13.85552 -13.78018 -13.65976 -13.63937 -13.50199 -13.26472 -13.01514 -12.78310 -12.05325 -11.80982 -11.66072 -11.25210 -11.05380 -11.00785 -10.89894 -10.56199 -10.40518 -10.35535 -9.68760 -9.49218 -9.18496 -8.87210 -8.64905 -8.19792 -6.88790 -6.22910 -4.20822 1.49678 1.96523 2.79186 3.18262 3.28947 3.33216 3.67807 3.74481 3.99118 4.03731 4.21248 4.25745 4.46578 4.78909 4.84403 4.99100 5.17355 5.33580 5.42268 5.67564 5.84516 5.90253 6.03632 6.19013 6.23246 6.40462 6.51235 6.59138 6.63938 6.65018 6.78083 6.87747 6.92881 7.12202 7.19433 7.25761 7.42547 7.82551 7.93402 8.24220 8.31644 8.73116 9.36283 10.78372 Molecular weight = 315.12amu Principal moments of inertia in cm(-1) A = 0.012545 B = 0.005585 C = 0.005099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2231.450165 B = 5012.504613 C = 5489.607944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.078 3.922 3 Si 0.886 3.114 4 H -0.281 1.281 5 H -0.283 1.283 6 H -0.271 1.271 7 C -0.499 4.499 8 H 0.063 0.937 9 C 0.040 3.960 10 C 0.143 3.857 11 N -0.713 5.713 12 C 0.265 3.735 13 C -0.198 4.198 14 C -0.055 4.055 15 C -0.201 4.201 16 C -0.045 4.045 17 C -0.244 4.244 18 C 0.132 3.868 19 H 0.141 0.859 20 O -0.526 6.526 21 C 0.419 3.581 22 F -0.169 7.169 23 F -0.181 7.181 24 F -0.185 7.185 25 C -0.192 4.192 26 C -0.210 4.210 27 H 0.265 0.735 28 H 0.028 0.972 29 H 0.118 0.882 30 H 0.393 0.607 31 H 0.129 0.871 32 H 0.118 0.882 33 H 0.115 0.885 34 H 0.114 0.886 35 H 0.381 0.619 36 H 0.065 0.935 37 H 0.080 0.920 38 H 0.076 0.924 39 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.019 -4.606 12.468 13.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.126 4.126 3 Si 0.713 3.287 4 H -0.207 1.207 5 H -0.208 1.208 6 H -0.195 1.195 7 C -0.535 4.535 8 H 0.081 0.919 9 C 0.039 3.961 10 C 0.020 3.980 11 N -0.334 5.334 12 C 0.154 3.846 13 C -0.221 4.221 14 C -0.074 4.074 15 C -0.221 4.221 16 C -0.063 4.063 17 C -0.251 4.251 18 C 0.071 3.929 19 H 0.158 0.842 20 O -0.332 6.332 21 C 0.364 3.636 22 F -0.150 7.150 23 F -0.162 7.162 24 F -0.166 7.166 25 C -0.231 4.231 26 C -0.248 4.248 27 H 0.075 0.925 28 H 0.047 0.953 29 H 0.136 0.864 30 H 0.228 0.772 31 H 0.147 0.853 32 H 0.136 0.864 33 H 0.133 0.867 34 H 0.132 0.868 35 H 0.231 0.769 36 H 0.084 0.916 37 H 0.099 0.901 38 H 0.095 0.905 39 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 0.085 -4.187 11.829 12.548 hybrid contribution 0.569 0.131 0.211 0.621 sum 0.655 -4.055 12.040 12.722 Atomic orbital electron populations 1.69818 1.06208 1.27293 1.47098 1.24918 0.94633 0.99166 0.93895 0.86673 0.80540 0.83345 0.78185 1.20664 1.20812 1.19529 1.20468 0.98360 0.90271 1.44431 0.91888 1.19094 0.95344 0.88351 0.93279 1.21404 0.93779 1.02707 0.80069 1.45214 1.09266 1.74852 1.04094 1.17648 0.91780 0.89771 0.85414 1.20732 0.92441 1.09800 0.99127 1.20931 0.99265 0.95117 0.92070 1.20637 0.93765 1.09915 0.97829 1.20402 0.94402 0.95883 0.95657 1.19243 0.92964 1.18886 0.93962 1.21615 0.93137 0.84995 0.93200 0.84178 1.86715 1.68337 1.62212 1.15895 1.21779 0.74406 0.93395 0.74037 1.93241 1.81317 1.83014 1.57441 1.93194 1.31030 1.96312 1.95708 1.93139 1.89269 1.89130 1.45095 1.22944 0.97300 1.06502 0.96308 1.22892 0.96073 1.02975 1.02848 0.92467 0.95331 0.86445 0.77213 0.85311 0.86391 0.86697 0.86805 0.76945 0.91610 0.90137 0.90545 0.91178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -22.58 11.09 55.43 0.61 -21.97 16 2 C 0.08 1.99 5.05 -17.82 -0.09 1.90 16 3 Si 0.89 20.14 29.59 -169.99 -5.03 15.11 16 4 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 6 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 7 C -0.50 -12.69 8.98 -34.44 -0.31 -13.00 16 8 H 0.06 1.62 7.90 -52.49 -0.41 1.21 16 9 C 0.04 0.92 1.74 -155.65 -0.27 0.65 16 10 C 0.14 3.07 4.60 -4.04 -0.02 3.05 16 11 N -0.71 -13.61 4.95 -58.63 -0.29 -13.90 16 12 C 0.26 4.65 6.23 -83.79 -0.52 4.13 16 13 C -0.20 -3.34 9.30 -39.38 -0.37 -3.70 16 14 C -0.05 -0.78 10.04 -39.61 -0.40 -1.18 16 15 C -0.20 -2.64 10.04 -39.54 -0.40 -3.04 16 16 C -0.04 -0.60 9.30 -39.61 -0.37 -0.97 16 17 C -0.24 -3.75 4.70 -104.42 -0.49 -4.24 16 18 C 0.13 1.89 2.77 -27.88 -0.08 1.81 16 19 H 0.14 2.12 6.70 -51.93 -0.35 1.77 16 20 O -0.53 -6.73 13.01 -35.23 -0.46 -7.19 16 21 C 0.42 6.01 2.86 37.16 0.11 6.12 16 22 F -0.17 -2.72 15.29 2.25 0.03 -2.69 16 23 F -0.18 -2.66 17.31 2.25 0.04 -2.62 16 24 F -0.18 -2.49 16.60 2.25 0.04 -2.45 16 25 C -0.19 -4.15 9.88 -26.73 -0.26 -4.41 16 26 C -0.21 -4.32 9.85 -26.73 -0.26 -4.59 16 27 H 0.27 6.63 8.32 -40.82 -0.34 6.29 16 28 H 0.03 0.59 7.90 -51.93 -0.41 0.18 16 29 H 0.12 2.82 5.01 -51.93 -0.26 2.56 16 30 H 0.39 7.40 5.88 -40.82 -0.24 7.16 16 31 H 0.13 2.24 6.73 -52.48 -0.35 1.89 16 32 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 33 H 0.11 1.22 8.06 -52.49 -0.42 0.79 16 34 H 0.11 1.17 6.43 -52.49 -0.34 0.83 16 35 H 0.38 3.50 6.82 45.56 0.31 3.81 16 36 H 0.07 1.33 8.08 -51.93 -0.42 0.91 16 37 H 0.08 1.77 8.14 -51.93 -0.42 1.35 16 38 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 39 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 LS Contribution 334.81 15.07 5.05 5.05 Total: -1.00 -26.67 334.81 -7.46 -34.13 By element: Atomic # 1 Polarization: 17.71 SS G_CDS: -3.72 Total: 13.99 kcal Atomic # 6 Polarization: -13.74 SS G_CDS: -3.73 Total: -17.46 kcal Atomic # 7 Polarization: -36.19 SS G_CDS: 0.32 Total: -35.87 kcal Atomic # 8 Polarization: -6.73 SS G_CDS: -0.46 Total: -7.19 kcal Atomic # 9 Polarization: -7.87 SS G_CDS: 0.11 Total: -7.76 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.03 Total: 15.11 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -26.67 -7.46 -34.13 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849315848.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.179 kcal (2) G-P(sol) polarization free energy of solvation -26.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds