Wall clock time and date at job start Fri Apr 10 2020 23:07:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86804 * 120.00166 * 2 1 4 4 H 1.48498 * 109.47158 * 274.86051 * 3 2 1 5 5 H 1.48504 * 109.46694 * 34.85514 * 3 2 1 6 6 H 1.48493 * 109.47432 * 154.85683 * 3 2 1 7 7 C 1.37877 * 120.00295 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00436 * 158.97502 * 7 2 1 9 9 C 1.50700 * 119.99722 * 338.97399 * 7 2 1 10 10 C 1.53008 * 115.55138 * 324.12475 * 9 7 2 11 11 N 1.46505 * 109.46898 * 279.43732 * 10 9 7 12 12 C 1.39674 * 119.99345 * 177.20091 * 11 10 9 13 13 C 1.38925 * 120.07948 * 358.91547 * 12 11 10 14 14 C 1.38081 * 119.92677 * 179.97438 * 13 12 11 15 15 C 1.38307 * 120.07611 * 359.97438 * 14 13 12 16 16 C 1.38268 * 120.14636 * 0.02801 * 15 14 13 17 17 C 1.38126 * 120.07604 * 359.74216 * 16 15 14 18 18 C 1.50700 * 120.03919 * 180.27653 * 17 16 15 19 19 H 1.08998 * 109.47178 * 213.37442 * 18 17 16 20 20 O 1.42903 * 109.46956 * 333.37750 * 18 17 16 21 21 C 1.53002 * 109.47063 * 93.37437 * 18 17 16 22 22 F 1.39898 * 109.47291 * 54.84870 * 21 18 17 23 23 F 1.39895 * 109.47365 * 174.85079 * 21 18 17 24 24 F 1.39906 * 109.47089 * 294.84984 * 21 18 17 25 25 C 1.53001 * 117.51944 * 109.82826 * 9 7 2 26 26 C 1.53002 * 60.00132 * 107.48202 * 25 9 7 27 27 H 0.96998 * 120.00407 * 5.24589 * 1 2 3 28 28 H 1.08992 * 109.46769 * 159.43433 * 10 9 7 29 29 H 1.09002 * 109.46733 * 39.43115 * 10 9 7 30 30 H 0.96991 * 120.00181 * 356.91973 * 11 10 9 31 31 H 1.08004 * 120.03957 * 359.97438 * 13 12 11 32 32 H 1.07998 * 119.96069 * 180.02562 * 14 13 12 33 33 H 1.08000 * 119.92832 * 180.02562 * 15 14 13 34 34 H 1.08000 * 119.95796 * 179.97438 * 16 15 14 35 35 H 0.96701 * 114.00148 * 59.99728 * 20 18 17 36 36 H 1.09002 * 117.49504 * 214.97115 * 25 9 7 37 37 H 1.08997 * 117.49917 * 359.97438 * 25 9 7 38 38 H 1.08997 * 117.49511 * 252.51623 * 26 25 9 39 39 H 1.08996 * 117.52177 * 107.48248 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.3939 2.1057 -1.3950 5 1 1.5016 2.6209 0.8002 6 1 3.5942 1.4128 0.5948 7 6 2.0045 -1.1940 -0.0005 8 1 3.0305 -1.2250 -0.3361 9 6 1.3263 -2.4559 0.4672 10 6 0.3441 -2.2859 1.6281 11 7 1.0858 -2.2242 2.8900 12 6 0.4044 -2.0117 4.0907 13 6 -0.9737 -1.8362 4.0875 14 6 -1.6442 -1.6268 5.2764 15 6 -0.9454 -1.5923 6.4694 16 6 0.4262 -1.7667 6.4761 17 6 1.1025 -1.9812 5.2910 18 6 2.5967 -2.1773 5.2999 19 1 3.0238 -1.7566 4.3896 20 8 3.1568 -1.5185 6.4376 21 6 2.9144 -3.6724 5.3687 22 9 2.2684 -4.3352 4.3197 23 9 4.2963 -3.8611 5.2588 24 9 2.4691 -4.1881 6.5907 25 6 0.9968 -3.5140 -0.5877 26 6 2.1328 -3.7548 0.4087 27 1 -0.4850 0.8365 -0.0768 28 1 -0.3417 -3.1326 1.6506 29 1 -0.2212 -1.3637 1.4935 30 1 2.0493 -2.3351 2.8922 31 1 -1.5201 -1.8634 3.1563 32 1 -2.7155 -1.4907 5.2746 33 1 -1.4722 -1.4289 7.3979 34 1 0.9689 -1.7388 7.4095 35 1 2.8213 -1.8429 7.2846 36 1 0.0804 -4.0890 -0.4546 37 1 1.2702 -3.2975 -1.6203 38 1 3.1537 -3.6966 0.0315 39 1 1.9640 -4.4880 1.1973 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000849315848.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:07:08 Heat of formation + Delta-G solvation = -161.807316 kcal Electronic energy + Delta-G solvation = -27742.181120 eV Core-core repulsion = 23427.866552 eV Total energy + Delta-G solvation = -4314.314568 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.119 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -51.17338 -48.68199 -48.66022 -40.87044 -38.86786 -38.00684 -35.60869 -34.26800 -32.68960 -30.47572 -29.20188 -27.75312 -26.65254 -24.95038 -23.07557 -22.60477 -22.21224 -20.95803 -19.88949 -19.66565 -19.38538 -18.70950 -18.09612 -17.36346 -16.78316 -16.66655 -15.85620 -15.60034 -15.53849 -15.50109 -15.23583 -15.07748 -15.02235 -14.85559 -14.80728 -14.74896 -14.44137 -14.37749 -14.29145 -13.61029 -13.38787 -12.98344 -12.87906 -12.72138 -12.39145 -12.30795 -12.16465 -12.03653 -11.51154 -11.31451 -11.24640 -10.78123 -10.64789 -10.03499 -9.79253 -8.30613 -8.08062 -6.18326 0.35260 0.79575 1.35634 1.42863 1.50606 1.65352 2.37172 2.55273 2.60623 2.67398 2.88000 2.96872 3.05385 3.38117 3.64100 3.66003 3.88614 4.08929 4.21478 4.29828 4.50283 4.59006 4.69208 4.70674 4.79430 4.83273 4.91334 5.09756 5.12270 5.22257 5.42320 5.51931 5.54809 5.57086 5.74171 5.95317 6.06694 6.29197 6.36619 6.51377 6.74048 6.94789 7.39743 8.84073 Molecular weight = 315.12amu Principal moments of inertia in cm(-1) A = 0.012545 B = 0.005585 C = 0.005099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2231.450165 B = 5012.504613 C = 5489.607944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.043 3.957 3 Si 0.936 3.064 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.270 1.270 7 C -0.514 4.514 8 H 0.052 0.948 9 C 0.016 3.984 10 C 0.162 3.838 11 N -0.721 5.721 12 C 0.238 3.762 13 C -0.223 4.223 14 C -0.056 4.056 15 C -0.191 4.191 16 C -0.046 4.046 17 C -0.247 4.247 18 C 0.140 3.860 19 H 0.128 0.872 20 O -0.527 6.527 21 C 0.423 3.577 22 F -0.181 7.181 23 F -0.183 7.183 24 F -0.177 7.177 25 C -0.194 4.194 26 C -0.188 4.188 27 H 0.265 0.735 28 H 0.026 0.974 29 H 0.090 0.910 30 H 0.391 0.609 31 H 0.110 0.890 32 H 0.142 0.858 33 H 0.150 0.850 34 H 0.150 0.850 35 H 0.398 0.602 36 H 0.077 0.923 37 H 0.072 0.928 38 H 0.078 0.922 39 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.099 -4.565 14.879 15.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.160 4.160 3 Si 0.762 3.238 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.195 1.195 7 C -0.551 4.551 8 H 0.070 0.930 9 C 0.015 3.985 10 C 0.038 3.962 11 N -0.345 5.345 12 C 0.129 3.871 13 C -0.246 4.246 14 C -0.075 4.075 15 C -0.212 4.212 16 C -0.064 4.064 17 C -0.252 4.252 18 C 0.078 3.922 19 H 0.145 0.855 20 O -0.335 6.335 21 C 0.368 3.632 22 F -0.162 7.162 23 F -0.165 7.165 24 F -0.158 7.158 25 C -0.233 4.233 26 C -0.225 4.225 27 H 0.074 0.926 28 H 0.044 0.956 29 H 0.108 0.892 30 H 0.226 0.774 31 H 0.128 0.872 32 H 0.160 0.840 33 H 0.168 0.832 34 H 0.168 0.832 35 H 0.250 0.750 36 H 0.095 0.905 37 H 0.090 0.910 38 H 0.097 0.903 39 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 0.156 -4.152 14.280 14.872 hybrid contribution 0.509 0.102 -0.417 0.666 sum 0.665 -4.049 13.863 14.458 Atomic orbital electron populations 1.69921 1.07015 1.27642 1.47805 1.25442 0.95219 1.01385 0.93912 0.85889 0.79419 0.80457 0.78047 1.20368 1.20947 1.19497 1.20658 0.98027 0.91765 1.44677 0.92955 1.19177 0.96676 0.88313 0.94315 1.20943 0.93285 1.01056 0.80935 1.44954 1.08929 1.76735 1.03864 1.17914 0.92247 0.91308 0.85586 1.20802 0.92541 1.11554 0.99682 1.21258 1.00618 0.94070 0.91548 1.21100 0.93852 1.07574 0.98626 1.20884 0.94913 0.94387 0.96260 1.19444 0.93488 1.18419 0.93893 1.21390 0.92563 0.84804 0.93456 0.85480 1.86708 1.68332 1.62076 1.16415 1.21746 0.74172 0.93322 0.73948 1.93219 1.81567 1.83265 1.58160 1.93189 1.31213 1.96322 1.95733 1.93149 1.89162 1.89066 1.44466 1.22939 0.98345 1.06208 0.95803 1.22834 0.95727 1.01613 1.02329 0.92565 0.95624 0.89192 0.77403 0.87170 0.84031 0.83226 0.83220 0.74991 0.90482 0.90985 0.90323 0.89867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -47.24 11.09 21.45 0.24 -47.00 16 2 C 0.04 2.21 5.05 84.66 0.43 2.64 16 3 Si 0.94 41.81 29.59 68.60 2.03 43.84 16 4 H -0.28 -12.20 7.11 99.48 0.71 -11.50 16 5 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 6 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 7 C -0.51 -26.69 8.98 25.60 0.23 -26.46 16 8 H 0.05 2.75 7.90 -2.91 -0.02 2.73 16 9 C 0.02 0.74 1.74 -52.92 -0.09 0.65 16 10 C 0.16 7.14 4.60 86.38 0.40 7.54 16 11 N -0.72 -28.08 4.95 -339.40 -1.68 -29.76 16 12 C 0.24 8.33 6.23 38.21 0.24 8.56 16 13 C -0.22 -7.53 9.30 22.40 0.21 -7.32 16 14 C -0.06 -1.49 10.04 22.25 0.22 -1.26 16 15 C -0.19 -4.32 10.04 22.29 0.22 -4.09 16 16 C -0.05 -1.08 9.30 22.25 0.21 -0.87 16 17 C -0.25 -7.18 4.70 -19.73 -0.09 -7.27 16 18 C 0.14 3.80 2.77 29.85 0.08 3.89 16 19 H 0.13 3.82 6.70 -2.39 -0.02 3.81 16 20 O -0.53 -12.14 13.01 -148.98 -1.94 -14.08 16 21 C 0.42 11.54 2.86 71.98 0.21 11.75 16 22 F -0.18 -5.71 15.29 44.97 0.69 -5.02 16 23 F -0.18 -5.14 17.31 44.97 0.78 -4.36 16 24 F -0.18 -4.34 16.60 44.97 0.75 -3.59 16 25 C -0.19 -8.45 9.88 30.60 0.30 -8.15 16 26 C -0.19 -7.68 9.85 30.60 0.30 -7.38 16 27 H 0.26 13.52 8.32 -92.71 -0.77 12.75 16 28 H 0.03 1.11 7.90 -2.39 -0.02 1.09 16 29 H 0.09 4.50 5.01 -2.39 -0.01 4.49 16 30 H 0.39 15.03 5.88 -92.71 -0.55 14.49 16 31 H 0.11 4.03 6.73 -2.91 -0.02 4.01 16 32 H 0.14 2.97 8.06 -2.91 -0.02 2.94 16 33 H 0.15 2.37 8.06 -2.91 -0.02 2.35 16 34 H 0.15 2.34 6.43 -2.91 -0.02 2.33 16 35 H 0.40 5.86 6.82 -74.06 -0.51 5.36 16 36 H 0.08 3.13 8.08 -2.39 -0.02 3.11 16 37 H 0.07 3.21 8.14 -2.39 -0.02 3.19 16 38 H 0.08 3.16 8.14 -2.39 -0.02 3.14 16 39 H 0.08 3.17 8.14 -2.39 -0.02 3.15 16 Total: -1.00 -57.28 334.81 3.79 -53.48 By element: Atomic # 1 Polarization: 34.19 SS G_CDS: 0.07 Total: 34.25 kcal Atomic # 6 Polarization: -30.64 SS G_CDS: 2.86 Total: -27.77 kcal Atomic # 7 Polarization: -75.31 SS G_CDS: -1.44 Total: -76.76 kcal Atomic # 8 Polarization: -12.14 SS G_CDS: -1.94 Total: -14.08 kcal Atomic # 9 Polarization: -15.19 SS G_CDS: 2.21 Total: -12.98 kcal Atomic # 14 Polarization: 41.81 SS G_CDS: 2.03 Total: 43.84 kcal Total: -57.28 3.79 -53.48 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849315848.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.323 kcal (2) G-P(sol) polarization free energy of solvation -57.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds