Wall clock time and date at job start Fri Apr 10 2020 23:07:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86793 * 120.00032 * 2 1 4 4 H 1.48507 * 109.47443 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47312 * 300.00347 * 3 2 1 6 6 H 1.48501 * 109.47223 * 60.00366 * 3 2 1 7 7 C 1.37881 * 120.00005 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99822 * 156.04363 * 7 2 1 9 9 C 1.50700 * 119.99726 * 336.03834 * 7 2 1 10 10 C 1.53003 * 115.55221 * 324.07760 * 9 7 2 11 11 N 1.46505 * 109.46585 * 277.67253 * 10 9 7 12 12 C 1.39675 * 119.99920 * 184.89626 * 11 10 9 13 13 C 1.38935 * 120.07010 * 354.26093 * 12 11 10 14 14 C 1.38084 * 119.92091 * 180.27238 * 13 12 11 15 15 C 1.38305 * 120.07481 * 359.52065 * 14 13 12 16 16 C 1.38264 * 120.15107 * 0.45587 * 15 14 13 17 17 C 1.38130 * 120.07231 * 359.79745 * 16 15 14 18 18 C 1.50694 * 120.03435 * 179.97438 * 17 16 15 19 19 H 1.09001 * 109.46841 * 143.20160 * 18 17 16 20 20 O 1.42893 * 109.47476 * 23.19621 * 18 17 16 21 21 C 1.52998 * 109.47150 * 263.19365 * 18 17 16 22 22 F 1.39904 * 109.47048 * 60.00571 * 21 18 17 23 23 F 1.39905 * 109.47329 * 180.02562 * 21 18 17 24 24 F 1.39897 * 109.47335 * 300.00298 * 21 18 17 25 25 C 1.53005 * 117.51667 * 109.77361 * 9 7 2 26 26 C 1.53002 * 117.49830 * 178.40135 * 9 7 2 27 27 H 0.97004 * 120.00114 * 5.02437 * 1 2 3 28 28 H 1.08995 * 109.47351 * 157.67709 * 10 9 7 29 29 H 1.08999 * 109.47234 * 37.67337 * 10 9 7 30 30 H 0.97003 * 120.00359 * 4.90035 * 11 10 9 31 31 H 1.08004 * 120.04415 * 359.97438 * 13 12 11 32 32 H 1.08003 * 119.96215 * 179.72513 * 14 13 12 33 33 H 1.08000 * 119.92526 * 180.25632 * 15 14 13 34 34 H 1.07996 * 119.96558 * 179.77096 * 16 15 14 35 35 H 0.96702 * 113.99936 * 299.99928 * 20 18 17 36 36 H 1.08994 * 117.49908 * 214.97409 * 25 9 7 37 37 H 1.09001 * 117.49788 * 359.97438 * 25 9 7 38 38 H 1.09001 * 117.49780 * 359.97438 * 26 9 7 39 39 H 1.08999 * 117.49251 * 144.97471 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0147 -1.2342 -0.3803 9 6 1.3484 -2.4432 0.5290 10 6 0.4195 -2.2431 1.7282 11 7 1.2141 -2.1925 2.9580 12 6 0.5767 -2.1182 4.1987 13 6 -0.8034 -1.9722 4.2647 14 6 -1.4297 -1.8935 5.4928 15 6 -0.6859 -1.9698 6.6563 16 6 0.6876 -2.1157 6.5942 17 6 1.3211 -2.1898 5.3690 18 6 2.8182 -2.3481 5.3023 19 1 3.0778 -2.9995 4.4677 20 8 3.2911 -2.9243 6.5214 21 6 3.4675 -0.9776 5.1004 22 9 3.1344 -0.1414 6.1715 23 9 4.8574 -1.1246 5.0379 24 9 3.0046 -0.4134 3.9068 25 6 0.9719 -3.5272 -0.4830 26 6 2.1517 -3.7438 0.4668 27 1 -0.4850 0.8368 -0.0736 28 1 -0.2849 -3.0729 1.7847 29 1 -0.1288 -1.3084 1.6111 30 1 2.1828 -2.2104 2.9108 31 1 -1.3852 -1.9155 3.3565 32 1 -2.5020 -1.7755 5.5449 33 1 -1.1787 -1.9122 7.6156 34 1 1.2659 -2.1712 7.5046 35 1 3.0948 -2.3970 7.3078 36 1 0.0626 -4.0978 -0.2944 37 1 1.1984 -3.3369 -1.5321 38 1 3.1546 -3.6961 0.0425 39 1 2.0188 -4.4567 1.2805 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000849315849.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:07:10 Heat of formation + Delta-G solvation = -145.782755 kcal Electronic energy + Delta-G solvation = -27911.601994 eV Core-core repulsion = 23597.982303 eV Total energy + Delta-G solvation = -4313.619691 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.119 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -49.93460 -47.47546 -47.37550 -39.70015 -37.37234 -36.80303 -34.25517 -32.32330 -31.55455 -29.27171 -27.98955 -25.93538 -25.05638 -23.77170 -21.53510 -21.32895 -20.94029 -19.24238 -18.72120 -18.41957 -18.16146 -17.38568 -16.60653 -15.99865 -15.48360 -14.81749 -14.57525 -14.33040 -14.23142 -14.11197 -13.93603 -13.83292 -13.81959 -13.57549 -13.52265 -13.39719 -13.29602 -13.07911 -12.65495 -12.10236 -11.76389 -11.75531 -11.25164 -11.03693 -11.00604 -10.89646 -10.54982 -10.42481 -10.35629 -9.69331 -9.48441 -9.19153 -8.85556 -8.66948 -8.17665 -6.90669 -6.24136 -4.17182 1.47641 1.93479 2.85144 3.20685 3.32431 3.36617 3.67344 3.78854 3.99530 4.08839 4.21705 4.28992 4.46931 4.79729 4.84998 4.97791 5.15917 5.31547 5.41350 5.65305 5.81809 5.87716 6.01279 6.16977 6.20834 6.36819 6.50649 6.55975 6.61948 6.62697 6.76439 6.85487 6.92421 7.08924 7.17465 7.24744 7.42388 7.81753 7.91558 8.26530 8.29958 8.75690 9.38785 10.79026 Molecular weight = 315.12amu Principal moments of inertia in cm(-1) A = 0.012136 B = 0.006198 C = 0.005417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2306.605247 B = 4516.754336 C = 5167.365149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.864 5.864 2 C 0.082 3.918 3 Si 0.880 3.120 4 H -0.270 1.270 5 H -0.284 1.284 6 H -0.279 1.279 7 C -0.500 4.500 8 H 0.064 0.936 9 C 0.041 3.959 10 C 0.146 3.854 11 N -0.715 5.715 12 C 0.261 3.739 13 C -0.199 4.199 14 C -0.055 4.055 15 C -0.200 4.200 16 C -0.044 4.044 17 C -0.244 4.244 18 C 0.134 3.866 19 H 0.139 0.861 20 O -0.527 6.527 21 C 0.414 3.586 22 F -0.184 7.184 23 F -0.182 7.182 24 F -0.161 7.161 25 C -0.192 4.192 26 C -0.211 4.211 27 H 0.264 0.736 28 H 0.032 0.968 29 H 0.110 0.890 30 H 0.395 0.605 31 H 0.129 0.871 32 H 0.118 0.882 33 H 0.115 0.885 34 H 0.115 0.885 35 H 0.382 0.618 36 H 0.065 0.935 37 H 0.080 0.920 38 H 0.077 0.923 39 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.721 -3.603 12.650 13.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C -0.123 4.123 3 Si 0.707 3.293 4 H -0.194 1.194 5 H -0.210 1.210 6 H -0.205 1.205 7 C -0.537 4.537 8 H 0.082 0.918 9 C 0.040 3.960 10 C 0.023 3.977 11 N -0.338 5.338 12 C 0.150 3.850 13 C -0.222 4.222 14 C -0.074 4.074 15 C -0.221 4.221 16 C -0.062 4.062 17 C -0.250 4.250 18 C 0.072 3.928 19 H 0.157 0.843 20 O -0.333 6.333 21 C 0.359 3.641 22 F -0.166 7.166 23 F -0.163 7.163 24 F -0.142 7.142 25 C -0.230 4.230 26 C -0.249 4.249 27 H 0.074 0.926 28 H 0.051 0.949 29 H 0.128 0.872 30 H 0.231 0.769 31 H 0.147 0.853 32 H 0.136 0.864 33 H 0.133 0.867 34 H 0.133 0.867 35 H 0.231 0.769 36 H 0.084 0.916 37 H 0.099 0.901 38 H 0.095 0.905 39 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 0.676 -3.903 12.057 12.691 hybrid contribution 0.723 1.560 0.114 1.724 sum 1.399 -2.342 12.171 12.473 Atomic orbital electron populations 1.69925 1.06273 1.27223 1.46551 1.24885 0.94523 0.99115 0.93771 0.86728 0.80970 0.83784 0.77833 1.19440 1.21049 1.20476 1.20450 0.99975 0.90723 1.42524 0.91825 1.19086 0.95563 0.88211 0.93112 1.21325 0.92873 1.02614 0.80872 1.45310 1.08995 1.76503 1.02957 1.17676 0.92060 0.90064 0.85191 1.20742 0.92701 1.10030 0.98693 1.20936 0.99296 0.95160 0.92017 1.20646 0.93536 1.09934 0.97973 1.20406 0.94764 0.95761 0.95317 1.19263 0.92871 1.19049 0.93829 1.21588 0.91141 0.89069 0.91002 0.84341 1.86687 1.81114 1.49975 1.15497 1.21817 0.77170 0.90204 0.74891 1.93146 1.92257 1.74696 1.56485 1.93190 1.31125 1.95908 1.96078 1.93303 1.88204 1.86651 1.46083 1.22954 0.96669 1.06550 0.96862 1.22887 0.95993 1.03288 1.02689 0.92550 0.94938 0.87225 0.76880 0.85335 0.86370 0.86669 0.86720 0.76853 0.91630 0.90104 0.90491 0.91340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -22.80 11.30 55.43 0.63 -22.18 16 2 C 0.08 2.13 4.97 -17.82 -0.09 2.04 16 3 Si 0.88 20.66 29.60 -169.99 -5.03 15.63 16 4 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 5 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.50 -12.88 8.96 -34.44 -0.31 -13.19 16 8 H 0.06 1.67 7.92 -52.49 -0.42 1.25 16 9 C 0.04 0.94 1.74 -155.65 -0.27 0.67 16 10 C 0.15 3.12 4.62 -4.04 -0.02 3.10 16 11 N -0.71 -13.63 4.89 -58.63 -0.29 -13.91 16 12 C 0.26 4.53 6.27 -83.79 -0.53 4.01 16 13 C -0.20 -3.30 9.30 -39.38 -0.37 -3.67 16 14 C -0.06 -0.77 10.04 -39.61 -0.40 -1.17 16 15 C -0.20 -2.58 10.04 -39.55 -0.40 -2.98 16 16 C -0.04 -0.58 9.30 -39.61 -0.37 -0.94 16 17 C -0.24 -3.69 4.72 -104.43 -0.49 -4.19 16 18 C 0.13 1.88 2.75 -27.89 -0.08 1.81 16 19 H 0.14 1.96 7.01 -51.93 -0.36 1.60 16 20 O -0.53 -6.43 12.90 -35.23 -0.45 -6.89 16 21 C 0.41 6.43 2.84 37.16 0.11 6.54 16 22 F -0.18 -2.75 16.65 2.25 0.04 -2.71 16 23 F -0.18 -2.82 17.26 2.25 0.04 -2.79 16 24 F -0.16 -3.03 14.65 2.25 0.03 -3.00 16 25 C -0.19 -4.12 9.88 -26.73 -0.26 -4.38 16 26 C -0.21 -4.27 9.87 -26.73 -0.26 -4.54 16 27 H 0.26 6.70 8.32 -40.82 -0.34 6.36 16 28 H 0.03 0.66 7.72 -51.93 -0.40 0.26 16 29 H 0.11 2.66 5.33 -51.93 -0.28 2.38 16 30 H 0.40 7.50 5.37 -40.82 -0.22 7.28 16 31 H 0.13 2.21 6.77 -52.48 -0.36 1.85 16 32 H 0.12 1.36 8.06 -52.48 -0.42 0.93 16 33 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 34 H 0.11 1.15 6.38 -52.49 -0.34 0.82 16 35 H 0.38 3.39 6.99 45.56 0.32 3.71 16 36 H 0.07 1.32 8.07 -51.93 -0.42 0.90 16 37 H 0.08 1.78 8.14 -51.93 -0.42 1.35 16 38 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 39 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 LS Contribution 334.29 15.07 5.04 5.04 Total: -1.00 -27.21 334.29 -7.45 -34.66 By element: Atomic # 1 Polarization: 16.75 SS G_CDS: -3.72 Total: 13.03 kcal Atomic # 6 Polarization: -13.16 SS G_CDS: -3.73 Total: -16.89 kcal Atomic # 7 Polarization: -36.43 SS G_CDS: 0.34 Total: -36.09 kcal Atomic # 8 Polarization: -6.43 SS G_CDS: -0.45 Total: -6.89 kcal Atomic # 9 Polarization: -8.60 SS G_CDS: 0.11 Total: -8.49 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.03 Total: 15.63 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -27.21 -7.45 -34.66 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849315849.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.125 kcal (2) G-P(sol) polarization free energy of solvation -27.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds