Wall clock time and date at job start Fri Apr 10 2020 23:07:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86793 * 120.00032 * 2 1 4 4 H 1.48507 * 109.47443 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47312 * 300.00347 * 3 2 1 6 6 H 1.48501 * 109.47223 * 60.00366 * 3 2 1 7 7 C 1.37881 * 120.00005 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99822 * 156.04363 * 7 2 1 9 9 C 1.50700 * 119.99726 * 336.03834 * 7 2 1 10 10 C 1.53003 * 115.55221 * 324.07760 * 9 7 2 11 11 N 1.46505 * 109.46585 * 277.67253 * 10 9 7 12 12 C 1.39675 * 119.99920 * 184.89626 * 11 10 9 13 13 C 1.38935 * 120.07010 * 354.26093 * 12 11 10 14 14 C 1.38084 * 119.92091 * 180.27238 * 13 12 11 15 15 C 1.38305 * 120.07481 * 359.52065 * 14 13 12 16 16 C 1.38264 * 120.15107 * 0.45587 * 15 14 13 17 17 C 1.38130 * 120.07231 * 359.79745 * 16 15 14 18 18 C 1.50694 * 120.03435 * 179.97438 * 17 16 15 19 19 H 1.09001 * 109.46841 * 143.20160 * 18 17 16 20 20 O 1.42893 * 109.47476 * 23.19621 * 18 17 16 21 21 C 1.52998 * 109.47150 * 263.19365 * 18 17 16 22 22 F 1.39904 * 109.47048 * 60.00571 * 21 18 17 23 23 F 1.39905 * 109.47329 * 180.02562 * 21 18 17 24 24 F 1.39897 * 109.47335 * 300.00298 * 21 18 17 25 25 C 1.53005 * 117.51667 * 109.77361 * 9 7 2 26 26 C 1.53002 * 117.49830 * 178.40135 * 9 7 2 27 27 H 0.97004 * 120.00114 * 5.02437 * 1 2 3 28 28 H 1.08995 * 109.47351 * 157.67709 * 10 9 7 29 29 H 1.08999 * 109.47234 * 37.67337 * 10 9 7 30 30 H 0.97003 * 120.00359 * 4.90035 * 11 10 9 31 31 H 1.08004 * 120.04415 * 359.97438 * 13 12 11 32 32 H 1.08003 * 119.96215 * 179.72513 * 14 13 12 33 33 H 1.08000 * 119.92526 * 180.25632 * 15 14 13 34 34 H 1.07996 * 119.96558 * 179.77096 * 16 15 14 35 35 H 0.96702 * 113.99936 * 299.99928 * 20 18 17 36 36 H 1.08994 * 117.49908 * 214.97409 * 25 9 7 37 37 H 1.09001 * 117.49788 * 359.97438 * 25 9 7 38 38 H 1.09001 * 117.49780 * 359.97438 * 26 9 7 39 39 H 1.08999 * 117.49251 * 144.97471 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0147 -1.2342 -0.3803 9 6 1.3484 -2.4432 0.5290 10 6 0.4195 -2.2431 1.7282 11 7 1.2141 -2.1925 2.9580 12 6 0.5767 -2.1182 4.1987 13 6 -0.8034 -1.9722 4.2647 14 6 -1.4297 -1.8935 5.4928 15 6 -0.6859 -1.9698 6.6563 16 6 0.6876 -2.1157 6.5942 17 6 1.3211 -2.1898 5.3690 18 6 2.8182 -2.3481 5.3023 19 1 3.0778 -2.9995 4.4677 20 8 3.2911 -2.9243 6.5214 21 6 3.4675 -0.9776 5.1004 22 9 3.1344 -0.1414 6.1715 23 9 4.8574 -1.1246 5.0379 24 9 3.0046 -0.4134 3.9068 25 6 0.9719 -3.5272 -0.4830 26 6 2.1517 -3.7438 0.4668 27 1 -0.4850 0.8368 -0.0736 28 1 -0.2849 -3.0729 1.7847 29 1 -0.1288 -1.3084 1.6111 30 1 2.1828 -2.2104 2.9108 31 1 -1.3852 -1.9155 3.3565 32 1 -2.5020 -1.7755 5.5449 33 1 -1.1787 -1.9122 7.6156 34 1 1.2659 -2.1712 7.5046 35 1 3.0948 -2.3970 7.3078 36 1 0.0626 -4.0978 -0.2944 37 1 1.1984 -3.3369 -1.5321 38 1 3.1546 -3.6961 0.0425 39 1 2.0188 -4.4567 1.2805 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000849315849.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:07:10 Heat of formation + Delta-G solvation = -160.902673 kcal Electronic energy + Delta-G solvation = -27912.257643 eV Core-core repulsion = 23597.982303 eV Total energy + Delta-G solvation = -4314.275340 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.119 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -51.18896 -48.70515 -48.67920 -40.87079 -38.86577 -38.00293 -35.60300 -34.27604 -32.67997 -30.49190 -29.19864 -27.76659 -26.64226 -24.95601 -23.06252 -22.61275 -22.19875 -20.97410 -19.88256 -19.65839 -19.40594 -18.70305 -18.11251 -17.34893 -16.79278 -16.67009 -15.83153 -15.73046 -15.51132 -15.46049 -15.33707 -15.09232 -15.01342 -14.84158 -14.80617 -14.71026 -14.55561 -14.35165 -14.20008 -13.60829 -13.44056 -13.02103 -12.89161 -12.75637 -12.37569 -12.32634 -12.15321 -12.03253 -11.53099 -11.31487 -11.24805 -10.79171 -10.61982 -10.02893 -9.79612 -8.31461 -8.12768 -6.17058 0.34674 0.78486 1.30691 1.39498 1.46475 1.66404 2.34934 2.53167 2.61007 2.68911 2.87434 2.95231 3.06894 3.34578 3.64232 3.64625 3.89107 4.09283 4.21157 4.29878 4.50129 4.58850 4.67817 4.70462 4.78915 4.84235 4.92122 5.09654 5.12312 5.23342 5.41769 5.53399 5.55196 5.57344 5.73913 5.91800 6.06387 6.27647 6.36299 6.50991 6.73600 6.95355 7.39222 8.81370 Molecular weight = 315.12amu Principal moments of inertia in cm(-1) A = 0.012136 B = 0.006198 C = 0.005417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2306.605247 B = 4516.754336 C = 5167.365149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.048 3.952 3 Si 0.924 3.076 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.285 1.285 7 C -0.513 4.513 8 H 0.051 0.949 9 C 0.014 3.986 10 C 0.165 3.835 11 N -0.723 5.723 12 C 0.234 3.766 13 C -0.223 4.223 14 C -0.056 4.056 15 C -0.191 4.191 16 C -0.045 4.045 17 C -0.246 4.246 18 C 0.146 3.854 19 H 0.136 0.864 20 O -0.523 6.523 21 C 0.413 3.587 22 F -0.180 7.180 23 F -0.183 7.183 24 F -0.184 7.184 25 C -0.193 4.193 26 C -0.186 4.186 27 H 0.264 0.736 28 H 0.034 0.966 29 H 0.078 0.922 30 H 0.393 0.607 31 H 0.110 0.890 32 H 0.142 0.858 33 H 0.150 0.850 34 H 0.151 0.849 35 H 0.398 0.602 36 H 0.078 0.922 37 H 0.070 0.930 38 H 0.078 0.922 39 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.806 -4.229 15.178 15.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.155 4.155 3 Si 0.750 3.250 4 H -0.195 1.195 5 H -0.205 1.205 6 H -0.211 1.211 7 C -0.550 4.550 8 H 0.069 0.931 9 C 0.013 3.987 10 C 0.041 3.959 11 N -0.348 5.348 12 C 0.126 3.874 13 C -0.246 4.246 14 C -0.075 4.075 15 C -0.211 4.211 16 C -0.063 4.063 17 C -0.252 4.252 18 C 0.084 3.916 19 H 0.153 0.847 20 O -0.331 6.331 21 C 0.358 3.642 22 F -0.161 7.161 23 F -0.164 7.164 24 F -0.166 7.166 25 C -0.232 4.232 26 C -0.223 4.223 27 H 0.074 0.926 28 H 0.052 0.948 29 H 0.096 0.904 30 H 0.228 0.772 31 H 0.128 0.872 32 H 0.160 0.840 33 H 0.168 0.832 34 H 0.169 0.831 35 H 0.250 0.750 36 H 0.097 0.903 37 H 0.089 0.911 38 H 0.096 0.904 39 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 0.756 -4.528 14.624 15.327 hybrid contribution 0.678 1.747 -0.535 1.949 sum 1.434 -2.781 14.089 14.432 Atomic orbital electron populations 1.70004 1.06939 1.27496 1.47486 1.25346 0.95058 1.01058 0.94005 0.86040 0.79964 0.81423 0.77533 1.19533 1.20460 1.21106 1.20637 0.99500 0.92333 1.42544 0.93125 1.19152 0.97188 0.88165 0.94209 1.20854 0.92539 1.00899 0.81615 1.45050 1.08496 1.78431 1.02853 1.17941 0.92602 0.91615 0.85217 1.20811 0.92705 1.11750 0.99353 1.21263 1.00735 0.94098 0.91388 1.21109 0.93549 1.07512 0.98922 1.20892 0.95393 0.94212 0.95787 1.19458 0.93291 1.18580 0.93850 1.21384 0.90479 0.87948 0.91838 0.84682 1.86690 1.80919 1.49995 1.15516 1.22093 0.77146 0.90809 0.74157 1.93147 1.92207 1.74763 1.56016 1.93184 1.31259 1.95915 1.96045 1.93259 1.88514 1.87123 1.47672 1.22937 0.97943 1.06077 0.96234 1.22858 0.95486 1.01649 1.02336 0.92629 0.94767 0.90429 0.77152 0.87181 0.84023 0.83213 0.83112 0.74987 0.90306 0.91143 0.90351 0.89352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -47.85 11.30 21.45 0.24 -47.61 16 2 C 0.05 2.56 4.97 84.66 0.42 2.98 16 3 Si 0.92 43.19 29.60 68.60 2.03 45.22 16 4 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 5 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 6 H -0.28 -13.49 7.11 99.48 0.71 -12.78 16 7 C -0.51 -27.03 8.96 25.60 0.23 -26.80 16 8 H 0.05 2.72 7.92 -2.91 -0.02 2.70 16 9 C 0.01 0.63 1.74 -52.92 -0.09 0.54 16 10 C 0.16 7.24 4.62 86.38 0.40 7.64 16 11 N -0.72 -27.98 4.89 -339.41 -1.66 -29.64 16 12 C 0.23 8.07 6.27 38.21 0.24 8.31 16 13 C -0.22 -7.40 9.30 22.40 0.21 -7.19 16 14 C -0.06 -1.45 10.04 22.25 0.22 -1.23 16 15 C -0.19 -4.18 10.04 22.29 0.22 -3.96 16 16 C -0.04 -1.01 9.30 22.25 0.21 -0.80 16 17 C -0.25 -6.99 4.72 -19.74 -0.09 -7.09 16 18 C 0.15 3.86 2.75 29.85 0.08 3.94 16 19 H 0.14 3.70 7.01 -2.39 -0.02 3.69 16 20 O -0.52 -11.18 12.90 -148.98 -1.92 -13.10 16 21 C 0.41 12.36 2.84 71.98 0.20 12.57 16 22 F -0.18 -5.02 16.65 44.97 0.75 -4.27 16 23 F -0.18 -5.48 17.26 44.97 0.78 -4.70 16 24 F -0.18 -6.97 14.65 44.97 0.66 -6.31 16 25 C -0.19 -8.30 9.88 30.60 0.30 -8.00 16 26 C -0.19 -7.41 9.87 30.60 0.30 -7.11 16 27 H 0.26 13.73 8.32 -92.71 -0.77 12.96 16 28 H 0.03 1.44 7.72 -2.39 -0.02 1.42 16 29 H 0.08 3.93 5.33 -2.39 -0.01 3.91 16 30 H 0.39 15.14 5.37 -92.71 -0.50 14.64 16 31 H 0.11 3.96 6.77 -2.91 -0.02 3.94 16 32 H 0.14 2.89 8.06 -2.91 -0.02 2.86 16 33 H 0.15 2.28 8.06 -2.91 -0.02 2.26 16 34 H 0.15 2.26 6.38 -2.91 -0.02 2.24 16 35 H 0.40 5.48 6.99 -74.06 -0.52 4.97 16 36 H 0.08 3.13 8.07 -2.39 -0.02 3.11 16 37 H 0.07 3.13 8.14 -2.39 -0.02 3.11 16 38 H 0.08 3.08 8.14 -2.39 -0.02 3.06 16 39 H 0.09 3.16 8.14 -2.39 -0.02 3.14 16 Total: -1.00 -59.03 334.29 3.83 -55.20 By element: Atomic # 1 Polarization: 31.30 SS G_CDS: 0.10 Total: 31.40 kcal Atomic # 6 Polarization: -29.05 SS G_CDS: 2.86 Total: -26.19 kcal Atomic # 7 Polarization: -75.83 SS G_CDS: -1.42 Total: -77.25 kcal Atomic # 8 Polarization: -11.18 SS G_CDS: -1.92 Total: -13.10 kcal Atomic # 9 Polarization: -17.46 SS G_CDS: 2.18 Total: -15.28 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.22 kcal Total: -59.03 3.83 -55.20 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849315849.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.706 kcal (2) G-P(sol) polarization free energy of solvation -59.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds