Wall clock time and date at job start Fri Apr 10 2020 23:07:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86796 * 119.99633 * 2 1 4 4 H 1.48506 * 109.47096 * 240.00304 * 3 2 1 5 5 H 1.48503 * 109.47485 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47174 * 120.00384 * 3 2 1 7 7 C 1.38810 * 119.99967 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99994 * 162.29427 * 7 2 1 9 9 N 1.36937 * 120.00022 * 342.28331 * 7 2 1 10 10 C 1.46920 * 120.63305 * 330.82267 * 9 7 2 11 11 C 1.53196 * 108.77820 * 233.58834 * 10 9 7 12 12 C 1.53041 * 109.31040 * 305.36452 * 11 10 9 13 13 O 1.45198 * 109.45982 * 181.38465 * 12 11 10 14 14 C 1.34821 * 117.00043 * 149.99745 * 13 12 11 15 15 O 1.21546 * 119.99615 * 0.02562 * 14 13 12 16 16 C 1.46998 * 120.00072 * 180.02562 * 14 13 12 17 17 C 1.38488 * 126.89693 * 174.01246 * 16 14 13 18 18 C 1.39636 * 105.35684 * 179.89267 * 17 16 14 19 19 N 1.30871 * 107.88013 * 0.38173 * 18 17 16 20 20 N 1.28439 * 110.94835 * 359.75604 * 19 18 17 21 21 C 1.46496 * 125.19900 * 179.97438 * 20 19 18 22 22 F 1.39901 * 109.47354 * 12.54431 * 21 20 19 23 23 F 1.39908 * 109.46899 * 132.54216 * 21 20 19 24 24 C 1.53038 * 109.53824 * 61.36306 * 12 11 10 25 25 C 1.46930 * 120.62946 * 150.80334 * 9 7 2 26 26 H 0.96997 * 120.00505 * 359.97438 * 1 2 3 27 27 H 1.08998 * 109.58807 * 113.80100 * 10 9 7 28 28 H 1.09007 * 109.70706 * 353.44467 * 10 9 7 29 29 H 1.08998 * 109.49789 * 185.41434 * 11 10 9 30 30 H 1.08997 * 109.49486 * 65.31539 * 11 10 9 31 31 H 1.09005 * 109.45927 * 301.34405 * 12 11 10 32 32 H 1.07998 * 127.31601 * 0.02562 * 17 16 14 33 33 H 1.08010 * 126.05888 * 180.13198 * 18 17 16 34 34 H 1.09000 * 109.47291 * 252.53912 * 21 20 19 35 35 H 1.09001 * 109.49506 * 58.58654 * 24 12 11 36 36 H 1.09003 * 109.50041 * 178.68185 * 24 12 11 37 37 H 1.08997 * 109.58235 * 246.20407 * 25 9 7 38 38 H 1.09000 * 109.58717 * 6.48218 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6965 -1.2126 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0519 -1.2242 -0.2850 9 7 1.3743 -2.3601 0.3598 10 6 0.2558 -2.3347 1.3121 11 6 0.5535 -3.3177 2.4488 12 6 0.8459 -4.6994 1.8594 13 8 1.0964 -5.6413 2.9357 14 6 0.7639 -6.9286 2.7122 15 8 0.2783 -7.2547 1.6467 16 6 0.9885 -7.9378 3.7572 17 6 0.5990 -9.2664 3.7275 18 6 1.0388 -9.8079 4.9371 19 7 1.6292 -8.8552 5.6127 20 7 1.6184 -7.7517 4.9556 21 6 2.1930 -6.4867 5.4200 22 9 2.9957 -6.7228 6.5412 23 9 2.9693 -5.9250 4.4006 24 6 2.0776 -4.6197 0.9546 25 6 1.7972 -3.6515 -0.1989 26 1 -0.4851 0.8400 0.0004 27 1 -0.6627 -2.6300 0.8050 28 1 0.1419 -1.3297 1.7187 29 1 -0.3098 -3.3801 3.1113 30 1 1.4204 -2.9713 3.0115 31 1 -0.0119 -5.0344 1.2762 32 1 0.0696 -9.7759 2.9359 33 1 0.9106 -10.8307 5.2598 34 1 1.3902 -5.7990 5.6862 35 1 2.9301 -4.2611 1.5315 36 1 2.2992 -5.6088 0.5537 37 1 1.0044 -4.0540 -0.8293 38 1 2.7015 -3.5146 -0.7918 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000850896268.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:07:12 Heat of formation + Delta-G solvation = -70.457631 kcal Electronic energy + Delta-G solvation = -27071.922545 eV Core-core repulsion = 22781.489158 eV Total energy + Delta-G solvation = -4290.433387 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.118 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.56656 -47.66228 -42.90357 -40.29584 -37.56955 -36.00570 -33.28369 -32.75014 -31.47408 -30.41471 -29.69680 -26.70144 -25.58070 -24.12052 -22.37961 -22.11323 -21.94417 -20.78448 -19.52696 -19.00379 -18.47669 -17.58727 -17.16282 -16.90888 -16.35703 -16.17758 -15.24352 -15.03443 -14.82990 -14.42961 -14.20222 -13.94506 -13.80982 -13.66285 -13.63154 -13.42942 -13.12443 -12.88228 -12.59457 -12.51686 -11.60873 -11.45363 -11.38640 -11.19121 -10.86361 -10.77157 -10.72002 -10.41512 -10.27560 -9.98784 -9.91441 -9.75326 -9.63742 -9.54259 -8.54441 -6.77998 -5.87680 -3.30779 0.62004 1.39041 2.12148 2.45466 2.70199 3.22604 3.35043 3.40880 3.42295 3.61172 4.13620 4.22965 4.43726 4.55948 4.83429 5.02057 5.14831 5.26226 5.32853 5.35965 5.45156 5.60824 5.81567 5.92208 6.02045 6.13413 6.15261 6.34060 6.39701 6.47578 6.64736 6.66982 6.87776 7.18033 7.38285 7.47259 7.64639 7.73715 8.36454 9.11951 9.74427 10.31494 11.21712 Molecular weight = 315.12amu Principal moments of inertia in cm(-1) A = 0.024660 B = 0.003430 C = 0.003178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.187959 B = 8161.736440 C = 8809.804392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.006 3.994 3 Si 0.904 3.096 4 H -0.282 1.282 5 H -0.290 1.290 6 H -0.283 1.283 7 C -0.258 4.258 8 H 0.067 0.933 9 N -0.591 5.591 10 C 0.176 3.824 11 C -0.136 4.136 12 C 0.103 3.897 13 O -0.355 6.355 14 C 0.532 3.468 15 O -0.484 6.484 16 C -0.005 4.005 17 C -0.138 4.138 18 C 0.013 3.987 19 N -0.255 5.255 20 N -0.335 5.335 21 C 0.504 3.496 22 F -0.167 7.167 23 F -0.157 7.157 24 C -0.146 4.146 25 C 0.149 3.851 26 H 0.256 0.744 27 H 0.024 0.976 28 H 0.094 0.906 29 H 0.058 0.942 30 H 0.069 0.931 31 H 0.082 0.918 32 H 0.175 0.825 33 H 0.199 0.801 34 H 0.165 0.835 35 H 0.070 0.930 36 H 0.055 0.945 37 H 0.022 0.978 38 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.723 -16.479 11.542 20.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.193 4.193 3 Si 0.733 3.267 4 H -0.208 1.208 5 H -0.216 1.216 6 H -0.209 1.209 7 C -0.388 4.388 8 H 0.084 0.916 9 N -0.314 5.314 10 C 0.049 3.951 11 C -0.175 4.175 12 C 0.050 3.950 13 O -0.272 6.272 14 C 0.373 3.627 15 O -0.369 6.369 16 C -0.128 4.128 17 C -0.166 4.166 18 C -0.166 4.166 19 N -0.085 5.085 20 N -0.134 5.134 21 C 0.372 3.628 22 F -0.148 7.148 23 F -0.138 7.138 24 C -0.185 4.185 25 C 0.022 3.978 26 H 0.066 0.934 27 H 0.042 0.958 28 H 0.112 0.888 29 H 0.077 0.923 30 H 0.087 0.913 31 H 0.100 0.900 32 H 0.193 0.807 33 H 0.216 0.784 34 H 0.182 0.818 35 H 0.089 0.911 36 H 0.074 0.926 37 H 0.040 0.960 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.124 -15.913 12.195 20.079 hybrid contribution 0.168 0.593 -0.833 1.036 sum 1.291 -15.319 11.362 19.116 Atomic orbital electron populations 1.70016 1.05310 1.25871 1.53347 1.25081 0.95282 0.98561 1.00411 0.86354 0.78948 0.83127 0.78239 1.20787 1.21586 1.20917 1.19136 0.92887 0.84761 1.41981 0.91576 1.44095 1.37948 1.01826 1.47521 1.20771 0.89389 0.97650 0.87247 1.22501 1.01399 0.92517 1.01095 1.23070 0.99310 0.86759 0.85880 1.86633 1.76200 1.17103 1.47275 1.19552 0.75653 0.82344 0.85142 1.90904 1.40375 1.81111 1.24537 1.20866 1.07360 0.96049 0.88516 1.22390 1.03304 0.90845 1.00085 1.23830 1.00561 0.99464 0.92737 1.73255 1.19752 0.91769 1.23758 1.47277 1.42688 1.09916 1.13568 1.21574 0.86968 0.80380 0.73886 1.93134 1.75871 1.94483 1.51292 1.93241 1.76841 1.83342 1.60393 1.22476 0.97287 1.00144 0.98639 1.20868 0.98345 0.86343 0.92224 0.93426 0.95836 0.88794 0.92347 0.91266 0.89958 0.80735 0.78448 0.81805 0.91142 0.92596 0.95973 0.91968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.43 11.33 55.49 0.63 -24.80 16 2 C 0.01 0.15 4.89 -17.43 -0.09 0.07 16 3 Si 0.90 21.17 29.59 -169.99 -5.03 16.14 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.26 -6.92 9.57 -15.06 -0.14 -7.06 16 8 H 0.07 1.74 7.89 -52.49 -0.41 1.33 16 9 N -0.59 -14.43 2.99 -172.32 -0.51 -14.94 16 10 C 0.18 3.99 5.30 -3.71 -0.02 3.97 16 11 C -0.14 -2.45 5.74 -26.61 -0.15 -2.60 16 12 C 0.10 1.78 2.42 -26.69 -0.06 1.72 16 13 O -0.36 -5.39 6.76 -40.82 -0.28 -5.67 16 14 C 0.53 7.91 7.77 34.28 0.27 8.17 16 15 O -0.48 -8.25 16.18 -19.30 -0.31 -8.56 16 16 C -0.01 -0.07 6.84 -82.07 -0.56 -0.63 16 17 C -0.14 -1.38 10.85 -38.97 -0.42 -1.80 16 18 C 0.01 0.11 12.03 -17.44 -0.21 -0.10 16 19 N -0.25 -2.89 11.52 30.58 0.35 -2.54 16 20 N -0.33 -3.94 3.71 -62.40 -0.23 -4.17 16 21 C 0.50 5.28 5.79 59.84 0.35 5.63 16 22 F -0.17 -1.83 17.11 2.25 0.04 -1.79 16 23 F -0.16 -2.02 14.93 2.25 0.03 -1.99 16 24 C -0.15 -2.63 5.72 -26.61 -0.15 -2.78 16 25 C 0.15 3.11 6.52 -3.71 -0.02 3.08 16 26 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 27 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.09 2.37 6.18 -51.93 -0.32 2.04 16 29 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 30 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 31 H 0.08 1.51 7.16 -51.93 -0.37 1.14 16 32 H 0.18 1.39 8.06 -52.49 -0.42 0.97 16 33 H 0.20 0.93 8.06 -52.48 -0.42 0.51 16 34 H 0.17 1.17 8.14 -51.93 -0.42 0.75 16 35 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 36 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.06 1.26 7.93 -51.93 -0.41 0.85 16 LS Contribution 329.43 15.07 4.96 4.96 Total: -1.00 -31.23 329.43 -6.03 -37.26 By element: Atomic # 1 Polarization: 2.89 SS G_CDS: -4.46 Total: -1.56 kcal Atomic # 6 Polarization: 8.89 SS G_CDS: -1.22 Total: 7.66 kcal Atomic # 7 Polarization: -46.69 SS G_CDS: 0.23 Total: -46.46 kcal Atomic # 8 Polarization: -13.64 SS G_CDS: -0.59 Total: -14.23 kcal Atomic # 9 Polarization: -3.84 SS G_CDS: 0.07 Total: -3.77 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.03 Total: 16.14 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -31.23 -6.03 -37.26 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850896268.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.195 kcal (2) G-P(sol) polarization free energy of solvation -31.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds