Wall clock time and date at job start Fri Apr 10 2020 23:07:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86796 * 119.99633 * 2 1 4 4 H 1.48506 * 109.47096 * 240.00304 * 3 2 1 5 5 H 1.48503 * 109.47485 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47174 * 120.00384 * 3 2 1 7 7 C 1.38810 * 119.99967 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99994 * 162.29427 * 7 2 1 9 9 N 1.36937 * 120.00022 * 342.28331 * 7 2 1 10 10 C 1.46920 * 120.63305 * 330.82267 * 9 7 2 11 11 C 1.53196 * 108.77820 * 233.58834 * 10 9 7 12 12 C 1.53041 * 109.31040 * 305.36452 * 11 10 9 13 13 O 1.45198 * 109.45982 * 181.38465 * 12 11 10 14 14 C 1.34821 * 117.00043 * 149.99745 * 13 12 11 15 15 O 1.21546 * 119.99615 * 0.02562 * 14 13 12 16 16 C 1.46998 * 120.00072 * 180.02562 * 14 13 12 17 17 C 1.38488 * 126.89693 * 174.01246 * 16 14 13 18 18 C 1.39636 * 105.35684 * 179.89267 * 17 16 14 19 19 N 1.30871 * 107.88013 * 0.38173 * 18 17 16 20 20 N 1.28439 * 110.94835 * 359.75604 * 19 18 17 21 21 C 1.46496 * 125.19900 * 179.97438 * 20 19 18 22 22 F 1.39901 * 109.47354 * 12.54431 * 21 20 19 23 23 F 1.39908 * 109.46899 * 132.54216 * 21 20 19 24 24 C 1.53038 * 109.53824 * 61.36306 * 12 11 10 25 25 C 1.46930 * 120.62946 * 150.80334 * 9 7 2 26 26 H 0.96997 * 120.00505 * 359.97438 * 1 2 3 27 27 H 1.08998 * 109.58807 * 113.80100 * 10 9 7 28 28 H 1.09007 * 109.70706 * 353.44467 * 10 9 7 29 29 H 1.08998 * 109.49789 * 185.41434 * 11 10 9 30 30 H 1.08997 * 109.49486 * 65.31539 * 11 10 9 31 31 H 1.09005 * 109.45927 * 301.34405 * 12 11 10 32 32 H 1.07998 * 127.31601 * 0.02562 * 17 16 14 33 33 H 1.08010 * 126.05888 * 180.13198 * 18 17 16 34 34 H 1.09000 * 109.47291 * 252.53912 * 21 20 19 35 35 H 1.09001 * 109.49506 * 58.58654 * 24 12 11 36 36 H 1.09003 * 109.50041 * 178.68185 * 24 12 11 37 37 H 1.08997 * 109.58235 * 246.20407 * 25 9 7 38 38 H 1.09000 * 109.58717 * 6.48218 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6965 -1.2126 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0519 -1.2242 -0.2850 9 7 1.3743 -2.3601 0.3598 10 6 0.2558 -2.3347 1.3121 11 6 0.5535 -3.3177 2.4488 12 6 0.8459 -4.6994 1.8594 13 8 1.0964 -5.6413 2.9357 14 6 0.7639 -6.9286 2.7122 15 8 0.2783 -7.2547 1.6467 16 6 0.9885 -7.9378 3.7572 17 6 0.5990 -9.2664 3.7275 18 6 1.0388 -9.8079 4.9371 19 7 1.6292 -8.8552 5.6127 20 7 1.6184 -7.7517 4.9556 21 6 2.1930 -6.4867 5.4200 22 9 2.9957 -6.7228 6.5412 23 9 2.9693 -5.9250 4.4006 24 6 2.0776 -4.6197 0.9546 25 6 1.7972 -3.6515 -0.1989 26 1 -0.4851 0.8400 0.0004 27 1 -0.6627 -2.6300 0.8050 28 1 0.1419 -1.3297 1.7187 29 1 -0.3098 -3.3801 3.1113 30 1 1.4204 -2.9713 3.0115 31 1 -0.0119 -5.0344 1.2762 32 1 0.0696 -9.7759 2.9359 33 1 0.9106 -10.8307 5.2598 34 1 1.3902 -5.7990 5.6862 35 1 2.9301 -4.2611 1.5315 36 1 2.2992 -5.6088 0.5537 37 1 1.0044 -4.0540 -0.8293 38 1 2.7015 -3.5146 -0.7918 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000850896268.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:07:12 Heat of formation + Delta-G solvation = -88.639546 kcal Electronic energy + Delta-G solvation = -27072.710972 eV Core-core repulsion = 22781.489158 eV Total energy + Delta-G solvation = -4291.221814 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.118 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -50.40666 -48.51865 -43.71976 -41.54341 -39.11429 -37.43029 -34.66947 -33.97700 -32.52488 -32.00092 -31.42944 -27.58235 -27.19009 -25.45467 -23.99825 -23.50298 -22.89292 -21.77066 -21.08105 -20.14082 -19.29126 -18.87977 -18.42938 -18.18616 -17.38401 -17.34717 -16.82308 -16.19756 -15.98912 -15.59879 -15.42710 -15.28815 -15.00275 -14.86607 -14.75704 -14.57495 -14.44694 -14.36121 -14.19493 -13.32681 -13.29946 -13.08625 -12.79211 -12.59427 -12.52855 -12.40830 -12.13318 -12.01696 -11.89634 -11.75151 -11.44803 -11.12870 -10.70322 -10.56215 -10.46747 -8.75050 -7.91589 -5.37609 -0.32388 0.60162 1.27960 1.33747 1.48879 1.50779 1.57623 1.71770 2.47660 2.50491 2.83013 3.15770 3.26507 3.41264 3.57850 3.75658 3.80992 3.87284 3.97130 4.12137 4.24404 4.34899 4.54951 4.68893 4.70593 4.74792 4.85377 4.93390 5.03042 5.05717 5.19384 5.29236 5.37274 5.39978 5.61970 5.66395 6.35353 6.38496 6.67199 7.11098 7.79019 8.32245 9.15946 Molecular weight = 315.12amu Principal moments of inertia in cm(-1) A = 0.024660 B = 0.003430 C = 0.003178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.187959 B = 8161.736440 C = 8809.804392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.043 4.043 3 Si 0.967 3.033 4 H -0.277 1.277 5 H -0.293 1.293 6 H -0.277 1.277 7 C -0.270 4.270 8 H 0.067 0.933 9 N -0.609 5.609 10 C 0.181 3.819 11 C -0.121 4.121 12 C 0.112 3.888 13 O -0.346 6.346 14 C 0.535 3.465 15 O -0.510 6.510 16 C -0.032 4.032 17 C -0.124 4.124 18 C 0.026 3.974 19 N -0.273 5.273 20 N -0.342 5.342 21 C 0.497 3.503 22 F -0.171 7.171 23 F -0.175 7.175 24 C -0.133 4.133 25 C 0.147 3.853 26 H 0.252 0.748 27 H 0.004 0.996 28 H 0.066 0.934 29 H 0.083 0.917 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.194 0.806 33 H 0.240 0.760 34 H 0.198 0.802 35 H 0.069 0.931 36 H 0.067 0.933 37 H 0.016 0.984 38 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.169 -18.124 12.835 22.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.239 4.239 3 Si 0.795 3.205 4 H -0.203 1.203 5 H -0.219 1.219 6 H -0.203 1.203 7 C -0.400 4.400 8 H 0.084 0.916 9 N -0.333 5.333 10 C 0.055 3.945 11 C -0.160 4.160 12 C 0.058 3.942 13 O -0.262 6.262 14 C 0.378 3.622 15 O -0.398 6.398 16 C -0.154 4.154 17 C -0.152 4.152 18 C -0.152 4.152 19 N -0.104 5.104 20 N -0.142 5.142 21 C 0.366 3.634 22 F -0.153 7.153 23 F -0.156 7.156 24 C -0.172 4.172 25 C 0.021 3.979 26 H 0.061 0.939 27 H 0.022 0.978 28 H 0.084 0.916 29 H 0.102 0.898 30 H 0.089 0.911 31 H 0.091 0.909 32 H 0.211 0.789 33 H 0.256 0.744 34 H 0.214 0.786 35 H 0.088 0.912 36 H 0.086 0.914 37 H 0.034 0.966 38 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 1.591 -17.584 13.505 22.229 hybrid contribution 0.018 0.943 -1.228 1.548 sum 1.609 -16.642 12.277 20.743 Atomic orbital electron populations 1.70160 1.06634 1.26223 1.54696 1.25805 0.96009 1.01495 1.00630 0.85351 0.77623 0.79131 0.78373 1.20267 1.21922 1.20253 1.19449 0.93147 0.85934 1.41489 0.91561 1.44349 1.38151 1.02397 1.48404 1.20567 0.88374 0.97413 0.88128 1.22198 1.02532 0.91809 0.99421 1.22715 0.98508 0.86902 0.86115 1.86621 1.76273 1.17403 1.45922 1.19884 0.74717 0.82153 0.85413 1.90893 1.41785 1.81314 1.25779 1.20751 1.09628 0.96317 0.88718 1.22804 1.01884 0.89789 1.00754 1.24541 0.98497 1.00543 0.91587 1.73275 1.20453 0.92182 1.24441 1.47352 1.43068 1.10360 1.13409 1.22130 0.87351 0.80689 0.73222 1.93118 1.76181 1.94548 1.51417 1.93200 1.77482 1.83653 1.61250 1.22270 0.97537 0.99735 0.97667 1.20943 0.98044 0.85583 0.93306 0.93853 0.97840 0.91591 0.89824 0.91109 0.90924 0.78855 0.74400 0.78624 0.91227 0.91403 0.96571 0.91805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.75 11.33 21.65 0.25 -53.50 16 2 C -0.04 -2.36 4.89 84.86 0.41 -1.95 16 3 Si 0.97 43.85 29.59 68.60 2.03 45.88 16 4 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 5 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 6 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 7 C -0.27 -14.62 9.57 84.03 0.80 -13.82 16 8 H 0.07 3.50 7.89 -2.91 -0.02 3.48 16 9 N -0.61 -30.16 2.99 -699.10 -2.09 -32.25 16 10 C 0.18 8.39 5.30 86.37 0.46 8.84 16 11 C -0.12 -4.27 5.74 30.67 0.18 -4.10 16 12 C 0.11 3.76 2.42 30.62 0.07 3.84 16 13 O -0.35 -10.00 6.76 -57.33 -0.39 -10.39 16 14 C 0.54 15.17 7.77 70.12 0.54 15.71 16 15 O -0.51 -16.88 16.18 19.68 0.32 -16.56 16 16 C -0.03 -0.74 6.84 40.75 0.28 -0.46 16 17 C -0.12 -2.11 10.85 22.67 0.25 -1.86 16 18 C 0.03 0.37 12.03 85.17 1.02 1.39 16 19 N -0.27 -5.49 11.52 -57.15 -0.66 -6.15 16 20 N -0.34 -7.37 3.71 -351.34 -1.30 -8.67 16 21 C 0.50 9.63 5.79 127.77 0.74 10.37 16 22 F -0.17 -3.53 17.11 44.97 0.77 -2.76 16 23 F -0.17 -4.29 14.93 44.97 0.67 -3.62 16 24 C -0.13 -4.69 5.72 30.67 0.18 -4.51 16 25 C 0.15 6.16 6.52 86.36 0.56 6.72 16 26 H 0.25 14.10 8.31 -92.71 -0.77 13.33 16 27 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 28 H 0.07 3.42 6.18 -2.38 -0.01 3.40 16 29 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 30 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 31 H 0.07 2.63 7.16 -2.38 -0.02 2.61 16 32 H 0.19 2.45 8.06 -2.91 -0.02 2.43 16 33 H 0.24 1.09 8.06 -2.91 -0.02 1.06 16 34 H 0.20 2.39 8.14 -2.39 -0.02 2.37 16 35 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 36 H 0.07 2.23 8.14 -2.39 -0.02 2.22 16 37 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 38 H 0.06 2.60 7.93 -2.39 -0.02 2.58 16 Total: -1.00 -67.82 329.43 6.19 -61.63 By element: Atomic # 1 Polarization: 5.11 SS G_CDS: 1.09 Total: 6.21 kcal Atomic # 6 Polarization: 14.68 SS G_CDS: 5.50 Total: 20.18 kcal Atomic # 7 Polarization: -96.76 SS G_CDS: -3.81 Total: -100.57 kcal Atomic # 8 Polarization: -26.89 SS G_CDS: -0.07 Total: -26.95 kcal Atomic # 9 Polarization: -7.82 SS G_CDS: 1.44 Total: -6.38 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Total: -67.82 6.19 -61.63 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850896268.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.011 kcal (2) G-P(sol) polarization free energy of solvation -67.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds