Wall clock time and date at job start Fri Apr 10 2020 23:07:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50699 * 109.47287 * 2 1 4 4 N 1.27772 * 124.99447 * 89.99738 * 3 2 1 5 5 N 1.37789 * 116.35051 * 179.71034 * 4 3 2 6 6 C 1.46506 * 122.73357 * 180.30653 * 5 4 3 7 7 N 1.46901 * 109.46713 * 270.21817 * 6 5 4 8 8 C 1.46899 * 110.99797 * 190.00044 * 7 6 5 9 9 C 1.50703 * 109.47250 * 155.65525 * 8 7 6 10 10 H 1.08004 * 119.99726 * 2.96780 * 9 8 7 11 11 C 1.37872 * 119.99815 * 182.96927 * 9 8 7 12 12 N 1.31509 * 120.00317 * 359.97438 * 11 9 8 13 13 Si 1.86804 * 119.99644 * 179.97438 * 11 9 8 14 14 H 1.48493 * 109.47243 * 0.02562 * 13 11 9 15 15 H 1.48503 * 109.46709 * 120.00466 * 13 11 9 16 16 H 1.48505 * 109.46936 * 239.99991 * 13 11 9 17 17 C 1.46898 * 111.00081 * 66.04310 * 7 6 5 18 18 C 1.53002 * 109.47099 * 197.43062 * 17 7 6 19 19 C 1.53000 * 109.47152 * 60.96029 * 18 17 7 20 20 C 1.53002 * 109.47023 * 180.95684 * 18 17 7 21 21 C 1.33550 * 114.53663 * 0.50582 * 5 4 3 22 22 S 1.71202 * 125.71736 * 179.80170 * 21 5 4 23 23 S 1.75935 * 124.99717 * 269.97461 * 3 2 1 24 24 H 1.09001 * 109.47393 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46851 * 300.00108 * 1 2 3 26 26 H 1.08996 * 109.47099 * 59.99860 * 1 2 3 27 27 H 1.09002 * 109.47289 * 239.99592 * 2 1 3 28 28 H 1.09000 * 109.46910 * 119.99670 * 2 1 3 29 29 H 1.08996 * 109.46907 * 30.21399 * 6 5 4 30 30 H 1.08997 * 109.47320 * 150.21649 * 6 5 4 31 31 H 1.09000 * 109.46967 * 275.65036 * 8 7 6 32 32 H 1.08998 * 109.47195 * 35.65140 * 8 7 6 33 33 H 0.97001 * 120.00094 * 179.97438 * 12 11 9 34 34 H 1.08997 * 109.47384 * 317.43137 * 17 7 6 35 35 H 1.09007 * 109.46866 * 77.43308 * 17 7 6 36 36 H 1.09003 * 109.47152 * 300.95403 * 18 17 7 37 37 H 1.08991 * 109.47195 * 180.02562 * 19 18 17 38 38 H 1.09004 * 109.46639 * 299.99652 * 19 18 17 39 39 H 1.08995 * 109.47008 * 59.99477 * 19 18 17 40 40 H 1.09001 * 109.46857 * 60.00228 * 20 18 17 41 41 H 1.09005 * 109.47231 * 179.97438 * 20 18 17 42 42 H 1.08995 * 109.47197 * 299.99946 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2766 2.1117 1.0467 5 7 2.7366 3.3939 0.8396 6 6 3.0664 4.3044 1.9390 7 7 1.8717 5.0731 2.3131 8 6 2.2135 6.1577 3.2430 9 6 1.1771 7.2475 3.1466 10 1 0.3221 7.1237 2.4984 11 6 1.3204 8.4025 3.8858 12 7 2.3612 8.5530 4.6754 13 14 0.0361 9.7536 3.7656 14 1 -1.0283 9.3417 2.8156 15 1 -0.5606 9.9897 5.1048 16 1 0.6760 11.0032 3.2815 17 6 0.8390 4.1972 2.8825 18 6 -0.5111 4.9165 2.8561 19 6 -0.8875 5.2418 1.4092 20 6 -1.5822 4.0134 3.4710 21 6 2.8534 3.7405 -0.4448 22 16 3.3909 5.2587 -1.0254 23 16 2.3693 2.3719 -1.4412 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.4109 3.7278 2.7974 30 1 3.8535 4.9880 1.6209 31 1 2.2383 5.7690 4.2611 32 1 3.1919 6.5629 2.9849 33 1 2.4622 9.3657 5.1952 34 1 0.7745 3.2817 2.2945 35 1 1.0992 3.9504 3.9119 36 1 -0.4418 5.8406 3.4301 37 1 -1.8490 5.7546 1.3904 38 1 -0.1244 5.8852 0.9712 39 1 -0.9568 4.3177 0.8354 40 1 -1.3140 3.7817 4.5018 41 1 -2.5440 4.5260 3.4526 42 1 -1.6516 3.0894 2.8971 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000853491398.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:07:14 Heat of formation + Delta-G solvation = 76.387420 kcal Electronic energy + Delta-G solvation = -23031.348022 eV Core-core repulsion = 19879.708666 eV Total energy + Delta-G solvation = -3151.639356 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 315.113 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.68125 -37.57679 -35.46059 -33.74645 -32.62684 -31.49861 -28.26169 -26.85696 -26.54823 -26.15343 -24.47922 -22.87743 -21.16604 -21.02649 -19.57706 -19.17196 -17.48080 -16.47547 -16.22301 -15.51085 -15.26434 -14.81362 -14.61129 -14.29858 -14.03061 -13.82827 -13.19414 -13.01276 -12.94026 -12.51252 -12.25195 -12.21479 -11.87412 -11.83754 -11.73525 -11.45109 -11.27699 -11.16006 -11.03688 -10.78134 -10.67260 -10.58227 -10.31279 -10.23019 -10.10723 -9.81203 -9.52357 -9.15532 -8.41647 -7.71738 -7.53040 -7.38169 -6.04749 -4.03433 0.28048 0.49189 0.94871 1.27337 1.82186 2.28818 3.31483 3.39930 3.44364 3.91429 4.37923 4.42789 4.65255 4.70526 4.74483 5.14716 5.30043 5.30241 5.37690 5.47739 5.51988 5.59142 5.64738 5.77452 5.79644 5.91643 5.96258 6.15046 6.15644 6.34081 6.41422 6.56989 6.67774 6.96589 7.09235 7.12060 7.13395 7.30120 7.73715 7.93281 8.03833 8.38984 9.01973 9.58735 11.05917 Molecular weight = 315.11amu Principal moments of inertia in cm(-1) A = 0.015541 B = 0.004804 C = 0.004159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1801.299177 B = 5826.639630 C = 6730.064537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.040 4.040 3 C 0.064 3.936 4 N -0.235 5.235 5 N -0.332 5.332 6 C 0.288 3.712 7 N -0.535 5.535 8 C 0.201 3.799 9 C -0.501 4.501 10 H 0.079 0.921 11 C 0.057 3.943 12 N -0.898 5.898 13 Si 0.893 3.107 14 H -0.271 1.271 15 H -0.286 1.286 16 H -0.284 1.284 17 C 0.071 3.929 18 C -0.105 4.105 19 C -0.128 4.128 20 C -0.142 4.142 21 C 0.230 3.770 22 S -0.435 6.435 23 S 0.099 5.901 24 H 0.074 0.926 25 H 0.065 0.935 26 H 0.062 0.938 27 H 0.097 0.903 28 H 0.101 0.899 29 H 0.068 0.932 30 H 0.127 0.873 31 H 0.000 1.000 32 H 0.035 0.965 33 H 0.261 0.739 34 H 0.053 0.947 35 H 0.027 0.973 36 H 0.115 0.885 37 H 0.038 0.962 38 H 0.075 0.925 39 H 0.026 0.974 40 H 0.047 0.953 41 H 0.050 0.950 42 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.798 -19.543 -7.844 21.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.081 4.081 3 C -0.238 4.238 4 N -0.049 5.049 5 N -0.125 5.125 6 C 0.076 3.924 7 N -0.260 5.260 8 C 0.077 3.923 9 C -0.540 4.540 10 H 0.097 0.903 11 C -0.145 4.145 12 N -0.538 5.538 13 Si 0.721 3.279 14 H -0.195 1.195 15 H -0.212 1.212 16 H -0.210 1.210 17 C -0.057 4.057 18 C -0.123 4.123 19 C -0.185 4.185 20 C -0.200 4.200 21 C -0.135 4.135 22 S -0.305 6.305 23 S 0.334 5.666 24 H 0.093 0.907 25 H 0.084 0.916 26 H 0.082 0.918 27 H 0.116 0.884 28 H 0.119 0.881 29 H 0.085 0.915 30 H 0.145 0.855 31 H 0.018 0.982 32 H 0.053 0.947 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.045 0.955 36 H 0.132 0.868 37 H 0.057 0.943 38 H 0.094 0.906 39 H 0.045 0.955 40 H 0.067 0.933 41 H 0.069 0.931 42 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -2.594 -18.374 -8.581 20.445 hybrid contribution -0.489 0.007 1.599 1.672 sum -3.083 -18.367 -6.982 19.890 Atomic orbital electron populations 1.21805 0.92622 1.03164 1.03377 1.20309 0.97333 0.85268 1.05208 1.28329 1.01369 1.02130 0.91992 1.73911 1.13002 0.92782 1.25233 1.49587 1.49175 1.07921 1.05857 1.22682 0.95536 0.89085 0.85060 1.62038 1.06730 1.10959 1.46312 1.19790 0.98096 0.86865 0.87535 1.21329 1.07864 0.99928 1.24830 0.90313 1.24963 0.95789 0.98219 0.95503 1.69952 1.28596 1.27392 1.27816 0.86499 0.81648 0.82048 0.77667 1.19519 1.21233 1.20980 1.22103 0.92752 0.94403 0.96466 1.21431 0.92179 1.00979 0.97733 1.21637 1.00791 0.99914 0.96181 1.21817 0.99024 0.99077 1.00044 1.28737 0.92258 1.03311 0.89166 1.93066 1.54502 1.06230 1.76707 1.86437 1.67361 1.03397 1.09420 0.90727 0.91599 0.91845 0.88438 0.88097 0.91461 0.85500 0.98249 0.94723 0.92977 0.92825 0.95497 0.86755 0.94330 0.90595 0.95492 0.93339 0.93115 0.94166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.89 37.16 0.37 -0.55 16 2 C -0.04 -0.25 6.54 -27.88 -0.18 -0.43 16 3 C 0.06 0.67 6.87 -13.97 -0.10 0.58 16 4 N -0.24 -3.19 10.08 33.13 0.33 -2.86 16 5 N -0.33 -5.35 3.26 -63.90 -0.21 -5.56 16 6 C 0.29 5.15 5.54 -63.31 -0.35 4.80 16 7 N -0.53 -10.91 3.85 -239.98 -0.92 -11.83 16 8 C 0.20 4.90 4.79 -4.97 -0.02 4.88 16 9 C -0.50 -13.27 7.24 -34.44 -0.25 -13.52 16 10 H 0.08 2.07 4.58 -52.48 -0.24 1.83 16 11 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 12 N -0.90 -25.91 13.29 55.43 0.74 -25.17 16 13 Si 0.89 21.48 29.54 -169.99 -5.02 16.46 16 14 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 15 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 16 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 17 C 0.07 1.32 4.33 -3.82 -0.02 1.30 16 18 C -0.10 -1.95 2.40 -90.62 -0.22 -2.17 16 19 C -0.13 -2.38 8.40 37.16 0.31 -2.06 16 20 C -0.14 -2.17 9.19 37.16 0.34 -1.83 16 21 C 0.23 3.80 7.54 53.51 0.40 4.21 16 22 S -0.44 -8.68 29.89 -107.50 -3.21 -11.89 16 23 S 0.10 1.18 23.36 -107.50 -2.51 -1.33 16 24 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 25 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.07 1.11 8.12 -51.93 -0.42 0.69 16 30 H 0.13 2.40 6.92 -51.93 -0.36 2.04 16 31 H 0.00 -0.01 7.67 -51.93 -0.40 -0.40 16 32 H 0.03 0.91 7.65 -51.93 -0.40 0.52 16 33 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 34 H 0.05 0.93 5.93 -51.93 -0.31 0.62 16 35 H 0.03 0.51 7.74 -51.93 -0.40 0.11 16 36 H 0.11 2.51 5.14 -51.93 -0.27 2.25 16 37 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.08 1.64 6.74 -51.93 -0.35 1.29 16 39 H 0.03 0.46 8.14 -51.93 -0.42 0.03 16 40 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 41 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 LS Contribution 362.99 15.07 5.47 5.47 Total: -1.00 -30.47 362.99 -11.65 -42.12 By element: Atomic # 1 Polarization: 4.45 SS G_CDS: -6.51 Total: -2.06 kcal Atomic # 6 Polarization: -3.54 SS G_CDS: 0.19 Total: -3.35 kcal Atomic # 7 Polarization: -45.36 SS G_CDS: -0.06 Total: -45.42 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 16 Polarization: -7.50 SS G_CDS: -5.72 Total: -13.22 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -30.47 -11.65 -42.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853491398.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.509 kcal (2) G-P(sol) polarization free energy of solvation -30.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.121 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds