Wall clock time and date at job start Fri Apr 10 2020 23:07:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50699 * 109.47287 * 2 1 4 4 N 1.27772 * 124.99447 * 89.99738 * 3 2 1 5 5 N 1.37789 * 116.35051 * 179.71034 * 4 3 2 6 6 C 1.46506 * 122.73357 * 180.30653 * 5 4 3 7 7 N 1.46901 * 109.46713 * 270.21817 * 6 5 4 8 8 C 1.46899 * 110.99797 * 190.00044 * 7 6 5 9 9 C 1.50703 * 109.47250 * 155.65525 * 8 7 6 10 10 H 1.08004 * 119.99726 * 2.96780 * 9 8 7 11 11 C 1.37872 * 119.99815 * 182.96927 * 9 8 7 12 12 N 1.31509 * 120.00317 * 359.97438 * 11 9 8 13 13 Si 1.86804 * 119.99644 * 179.97438 * 11 9 8 14 14 H 1.48493 * 109.47243 * 0.02562 * 13 11 9 15 15 H 1.48503 * 109.46709 * 120.00466 * 13 11 9 16 16 H 1.48505 * 109.46936 * 239.99991 * 13 11 9 17 17 C 1.46898 * 111.00081 * 66.04310 * 7 6 5 18 18 C 1.53002 * 109.47099 * 197.43062 * 17 7 6 19 19 C 1.53000 * 109.47152 * 60.96029 * 18 17 7 20 20 C 1.53002 * 109.47023 * 180.95684 * 18 17 7 21 21 C 1.33550 * 114.53663 * 0.50582 * 5 4 3 22 22 S 1.71202 * 125.71736 * 179.80170 * 21 5 4 23 23 S 1.75935 * 124.99717 * 269.97461 * 3 2 1 24 24 H 1.09001 * 109.47393 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46851 * 300.00108 * 1 2 3 26 26 H 1.08996 * 109.47099 * 59.99860 * 1 2 3 27 27 H 1.09002 * 109.47289 * 239.99592 * 2 1 3 28 28 H 1.09000 * 109.46910 * 119.99670 * 2 1 3 29 29 H 1.08996 * 109.46907 * 30.21399 * 6 5 4 30 30 H 1.08997 * 109.47320 * 150.21649 * 6 5 4 31 31 H 1.09000 * 109.46967 * 275.65036 * 8 7 6 32 32 H 1.08998 * 109.47195 * 35.65140 * 8 7 6 33 33 H 0.97001 * 120.00094 * 179.97438 * 12 11 9 34 34 H 1.08997 * 109.47384 * 317.43137 * 17 7 6 35 35 H 1.09007 * 109.46866 * 77.43308 * 17 7 6 36 36 H 1.09003 * 109.47152 * 300.95403 * 18 17 7 37 37 H 1.08991 * 109.47195 * 180.02562 * 19 18 17 38 38 H 1.09004 * 109.46639 * 299.99652 * 19 18 17 39 39 H 1.08995 * 109.47008 * 59.99477 * 19 18 17 40 40 H 1.09001 * 109.46857 * 60.00228 * 20 18 17 41 41 H 1.09005 * 109.47231 * 179.97438 * 20 18 17 42 42 H 1.08995 * 109.47197 * 299.99946 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2766 2.1117 1.0467 5 7 2.7366 3.3939 0.8396 6 6 3.0664 4.3044 1.9390 7 7 1.8717 5.0731 2.3131 8 6 2.2135 6.1577 3.2430 9 6 1.1771 7.2475 3.1466 10 1 0.3221 7.1237 2.4984 11 6 1.3204 8.4025 3.8858 12 7 2.3612 8.5530 4.6754 13 14 0.0361 9.7536 3.7656 14 1 -1.0283 9.3417 2.8156 15 1 -0.5606 9.9897 5.1048 16 1 0.6760 11.0032 3.2815 17 6 0.8390 4.1972 2.8825 18 6 -0.5111 4.9165 2.8561 19 6 -0.8875 5.2418 1.4092 20 6 -1.5822 4.0134 3.4710 21 6 2.8534 3.7405 -0.4448 22 16 3.3909 5.2587 -1.0254 23 16 2.3693 2.3719 -1.4412 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.4109 3.7278 2.7974 30 1 3.8535 4.9880 1.6209 31 1 2.2383 5.7690 4.2611 32 1 3.1919 6.5629 2.9849 33 1 2.4622 9.3657 5.1952 34 1 0.7745 3.2817 2.2945 35 1 1.0992 3.9504 3.9119 36 1 -0.4418 5.8406 3.4301 37 1 -1.8490 5.7546 1.3904 38 1 -0.1244 5.8852 0.9712 39 1 -0.9568 4.3177 0.8354 40 1 -1.3140 3.7817 4.5018 41 1 -2.5440 4.5260 3.4526 42 1 -1.6516 3.0894 2.8971 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000853491398.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:07:14 Heat of formation + Delta-G solvation = 58.545890 kcal Electronic energy + Delta-G solvation = -23032.121689 eV Core-core repulsion = 19879.708666 eV Total energy + Delta-G solvation = -3152.413022 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 315.113 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.93846 -39.13823 -36.47283 -35.23694 -34.50117 -32.54536 -29.96178 -28.50761 -27.93045 -27.31410 -25.80136 -24.26235 -22.82408 -22.01641 -20.86188 -20.62701 -18.97654 -18.16737 -17.69802 -16.85093 -16.63499 -16.40142 -15.79618 -15.56464 -15.29122 -14.94887 -14.65775 -14.35705 -14.16446 -13.90944 -13.81304 -13.46254 -13.26751 -13.01661 -12.90520 -12.83956 -12.71018 -12.60158 -12.45978 -12.13712 -12.11714 -11.97848 -11.79182 -11.68594 -11.61943 -11.40546 -11.01550 -10.92711 -10.52264 -9.29771 -9.04193 -8.89607 -8.16510 -6.20461 -0.97797 -0.70678 -0.18159 0.19798 0.59218 0.90003 1.38378 1.41701 1.52756 2.40666 2.92703 3.02101 3.17991 3.57384 3.87807 3.98525 4.11829 4.18043 4.22221 4.25942 4.36807 4.46145 4.57607 4.68153 4.74070 4.81153 4.89728 4.99822 5.00303 5.02777 5.04632 5.11640 5.18809 5.33234 5.36595 5.54419 5.67737 5.79513 5.93023 6.02107 6.24163 6.41217 6.90796 7.44921 8.94401 Molecular weight = 315.11amu Principal moments of inertia in cm(-1) A = 0.015541 B = 0.004804 C = 0.004159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1801.299177 B = 5826.639630 C = 6730.064537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.041 4.041 3 C 0.084 3.916 4 N -0.257 5.257 5 N -0.330 5.330 6 C 0.294 3.706 7 N -0.542 5.542 8 C 0.220 3.780 9 C -0.502 4.502 10 H 0.079 0.921 11 C 0.005 3.995 12 N -0.934 5.934 13 Si 0.954 3.046 14 H -0.264 1.264 15 H -0.278 1.278 16 H -0.286 1.286 17 C 0.077 3.923 18 C -0.106 4.106 19 C -0.117 4.117 20 C -0.133 4.133 21 C 0.225 3.775 22 S -0.561 6.561 23 S 0.193 5.807 24 H 0.101 0.899 25 H 0.048 0.952 26 H 0.061 0.939 27 H 0.133 0.867 28 H 0.119 0.881 29 H 0.084 0.916 30 H 0.108 0.892 31 H -0.019 1.019 32 H 0.005 0.995 33 H 0.261 0.739 34 H 0.072 0.928 35 H 0.021 0.979 36 H 0.077 0.923 37 H 0.048 0.952 38 H 0.038 0.962 39 H 0.043 0.957 40 H 0.051 0.949 41 H 0.060 0.940 42 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.126 -23.572 -8.748 25.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.082 4.082 3 C -0.216 4.216 4 N -0.071 5.071 5 N -0.119 5.119 6 C 0.081 3.919 7 N -0.267 5.267 8 C 0.095 3.905 9 C -0.540 4.540 10 H 0.097 0.903 11 C -0.193 4.193 12 N -0.575 5.575 13 Si 0.779 3.221 14 H -0.189 1.189 15 H -0.204 1.204 16 H -0.212 1.212 17 C -0.051 4.051 18 C -0.125 4.125 19 C -0.174 4.174 20 C -0.191 4.191 21 C -0.144 4.144 22 S -0.432 6.432 23 S 0.430 5.570 24 H 0.120 0.880 25 H 0.067 0.933 26 H 0.080 0.920 27 H 0.151 0.849 28 H 0.137 0.863 29 H 0.101 0.899 30 H 0.126 0.874 31 H -0.001 1.001 32 H 0.023 0.977 33 H 0.070 0.930 34 H 0.091 0.909 35 H 0.039 0.961 36 H 0.095 0.905 37 H 0.067 0.933 38 H 0.057 0.943 39 H 0.062 0.938 40 H 0.070 0.930 41 H 0.079 0.921 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -4.944 -22.459 -9.497 24.881 hybrid contribution 0.160 0.855 1.817 2.014 sum -4.784 -21.605 -7.680 23.423 Atomic orbital electron populations 1.21847 0.91938 1.04744 1.02490 1.20757 0.97589 0.82023 1.07862 1.29468 0.97928 1.03369 0.90885 1.74105 1.15482 0.91377 1.26121 1.49497 1.48228 1.08953 1.05266 1.22412 0.94237 0.89277 0.85954 1.61870 1.08160 1.11334 1.45352 1.19352 0.96136 0.87808 0.87221 1.21626 1.07996 1.00392 1.23999 0.90287 1.25733 0.97611 1.00491 0.95433 1.70066 1.30384 1.28088 1.28997 0.85557 0.79451 0.79109 0.77936 1.18853 1.20369 1.21211 1.22109 0.92130 0.94555 0.96276 1.21358 0.93433 1.00244 0.97445 1.21495 0.99948 0.99980 0.96012 1.21721 0.97975 0.99160 1.00207 1.28797 0.91839 1.03662 0.90117 1.93294 1.60352 1.11107 1.78467 1.86200 1.64317 0.99304 1.07194 0.88035 0.93283 0.91959 0.84881 0.86289 0.89866 0.87416 1.00137 0.97682 0.92987 0.90930 0.96094 0.90475 0.93338 0.94288 0.93812 0.93008 0.92128 0.92062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.89 71.98 0.71 -0.32 16 2 C -0.04 -0.27 6.54 29.85 0.20 -0.08 16 3 C 0.08 1.42 6.87 88.70 0.61 2.03 16 4 N -0.26 -6.24 10.08 -48.78 -0.49 -6.74 16 5 N -0.33 -10.44 3.26 -356.06 -1.16 -11.60 16 6 C 0.29 10.86 5.54 170.80 0.95 11.81 16 7 N -0.54 -22.88 3.85 -913.15 -3.51 -26.39 16 8 C 0.22 11.35 4.79 85.56 0.41 11.76 16 9 C -0.50 -27.67 7.24 25.60 0.19 -27.49 16 10 H 0.08 4.30 4.58 -2.91 -0.01 4.28 16 11 C 0.00 0.28 5.46 84.65 0.46 0.74 16 12 N -0.93 -55.96 13.29 21.44 0.28 -55.67 16 13 Si 0.95 45.16 29.54 68.60 2.03 47.18 16 14 H -0.26 -12.12 7.11 99.48 0.71 -11.41 16 15 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 16 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 17 C 0.08 2.83 4.33 86.30 0.37 3.20 16 18 C -0.11 -3.88 2.40 -10.79 -0.03 -3.90 16 19 C -0.12 -4.24 8.40 71.98 0.60 -3.63 16 20 C -0.13 -3.73 9.19 71.98 0.66 -3.07 16 21 C 0.22 7.41 7.54 129.98 0.98 8.39 16 22 S -0.56 -23.92 29.89 -56.49 -1.69 -25.61 16 23 S 0.19 3.96 23.36 -56.49 -1.32 2.65 16 24 H 0.10 0.23 8.14 -2.39 -0.02 0.21 16 25 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 26 H 0.06 0.46 8.14 -2.39 -0.02 0.45 16 27 H 0.13 0.11 8.14 -2.39 -0.02 0.09 16 28 H 0.12 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.08 2.79 8.12 -2.39 -0.02 2.77 16 30 H 0.11 4.42 6.92 -2.39 -0.02 4.41 16 31 H -0.02 -1.03 7.67 -2.39 -0.02 -1.05 16 32 H 0.01 0.29 7.65 -2.39 -0.02 0.27 16 33 H 0.26 14.87 8.31 -92.71 -0.77 14.10 16 34 H 0.07 2.38 5.93 -2.39 -0.01 2.36 16 35 H 0.02 0.79 7.74 -2.38 -0.02 0.77 16 36 H 0.08 3.44 5.14 -2.39 -0.01 3.43 16 37 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 38 H 0.04 1.70 6.74 -2.38 -0.02 1.68 16 39 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 40 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 41 H 0.06 1.58 8.14 -2.38 -0.02 1.56 16 42 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 Total: -1.00 -72.06 362.99 1.26 -70.80 By element: Atomic # 1 Polarization: 4.93 SS G_CDS: 1.01 Total: 5.94 kcal Atomic # 6 Polarization: -6.67 SS G_CDS: 6.11 Total: -0.56 kcal Atomic # 7 Polarization: -95.52 SS G_CDS: -4.88 Total: -100.40 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.18 kcal Atomic # 16 Polarization: -19.95 SS G_CDS: -3.01 Total: -22.96 kcal Total: -72.06 1.26 -70.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853491398.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.342 kcal (2) G-P(sol) polarization free energy of solvation -72.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.796 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds