Wall clock time and date at job start Fri Apr 10 2020 23:07:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 120.00426 * 2 1 4 4 H 1.48505 * 109.46843 * 269.99869 * 3 2 1 5 5 H 1.48501 * 109.47209 * 29.99014 * 3 2 1 6 6 H 1.48492 * 109.47511 * 149.99580 * 3 2 1 7 7 C 1.37881 * 119.99700 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99695 * 173.68876 * 7 2 1 9 9 C 1.50696 * 120.00016 * 353.69329 * 7 2 1 10 10 C 1.52999 * 115.54822 * 85.64865 * 9 7 2 11 11 S 1.81401 * 109.47123 * 65.33237 * 10 9 7 12 12 C 1.81401 * 103.00206 * 179.97438 * 11 10 9 13 13 C 1.50695 * 109.47324 * 179.97438 * 12 11 10 14 14 C 1.35373 * 126.97450 * 270.04182 * 13 12 11 15 15 N 1.33778 * 106.53401 * 179.97438 * 14 13 12 16 16 N 1.28603 * 109.06564 * 359.97438 * 15 14 13 17 17 N 1.28731 * 110.23408 * 0.02562 * 16 15 14 18 18 C 1.40242 * 125.94395 * 179.97438 * 17 16 15 19 19 C 1.38827 * 120.06703 * 144.74737 * 18 17 16 20 20 C 1.38122 * 119.93461 * 179.67619 * 19 18 17 21 21 C 1.38276 * 120.06437 * 0.63008 * 20 19 18 22 22 C 1.38273 * 120.13105 * 359.67150 * 21 20 19 23 23 C 1.38120 * 120.06546 * 359.97438 * 22 21 20 24 24 C 1.52999 * 117.50040 * 231.31578 * 9 7 2 25 25 C 1.52995 * 117.50017 * 299.97917 * 9 7 2 26 26 H 0.96998 * 119.99715 * 355.02624 * 1 2 3 27 27 H 1.09001 * 109.47668 * 305.32975 * 10 9 7 28 28 H 1.09009 * 109.47101 * 185.32798 * 10 9 7 29 29 H 1.09000 * 109.47365 * 59.99730 * 12 11 10 30 30 H 1.09007 * 109.47103 * 300.00257 * 12 11 10 31 31 H 1.08000 * 126.73218 * 359.94533 * 14 13 12 32 32 H 1.08002 * 120.03056 * 359.97438 * 19 18 17 33 33 H 1.08002 * 119.96404 * 180.34152 * 20 19 18 34 34 H 1.08003 * 119.93234 * 179.69540 * 21 20 19 35 35 H 1.08003 * 119.96892 * 180.02562 * 22 21 20 36 36 H 1.07999 * 120.03586 * 180.02562 * 23 22 21 37 37 H 1.08997 * 117.50402 * 215.00269 * 24 9 7 38 38 H 1.09004 * 117.49794 * 0.03206 * 24 9 7 39 39 H 1.09000 * 117.50295 * 359.97438 * 25 9 7 40 40 H 1.09003 * 117.50373 * 144.97559 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6527 0.6998 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0796 -1.1970 -0.1023 9 6 1.2578 -2.4951 0.1445 10 6 0.7095 -3.0885 -1.1548 11 16 2.0893 -3.5561 -2.2356 12 6 1.2525 -4.2280 -3.6982 13 6 2.2812 -4.6678 -4.7077 14 6 2.8229 -3.9194 -5.6972 15 7 3.6852 -4.7111 -6.3448 16 7 3.6815 -5.8741 -5.7958 17 7 2.8549 -5.8980 -4.8092 18 6 2.5913 -7.0000 -3.9827 19 6 2.3226 -6.8094 -2.6341 20 6 2.0567 -7.8961 -1.8240 21 6 2.0707 -9.1738 -2.3523 22 6 2.3442 -9.3673 -3.6939 23 6 2.6037 -8.2839 -4.5104 24 6 1.7409 -3.4719 1.2185 25 6 0.4341 -2.6998 1.4174 26 1 -0.4849 0.8369 0.0728 27 1 0.0881 -2.3481 -1.6586 28 1 0.1111 -3.9708 -0.9273 29 1 0.6173 -3.4594 -4.1385 30 1 0.6407 -5.0817 -3.4066 31 1 2.6020 -2.8861 -5.9203 32 1 2.3167 -5.8120 -2.2198 33 1 1.8421 -7.7479 -0.7759 34 1 1.8674 -10.0224 -1.7159 35 1 2.3541 -10.3664 -4.1039 36 1 2.8168 -8.4355 -5.5583 37 1 1.6680 -4.5371 0.9995 38 1 2.5985 -3.1732 1.8214 39 1 0.4326 -1.8937 2.1511 40 1 -0.4987 -3.2569 1.3293 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000853774862.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:07:16 Heat of formation + Delta-G solvation = 153.288856 kcal Electronic energy + Delta-G solvation = -23088.337135 eV Core-core repulsion = 19804.588525 eV Total energy + Delta-G solvation = -3283.748610 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.110 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -43.44629 -39.41402 -36.68978 -34.74657 -33.10758 -32.01127 -31.15797 -29.99828 -28.13476 -27.34069 -25.37149 -24.12716 -23.39949 -21.79613 -21.22802 -20.89884 -19.33750 -18.28748 -16.79603 -16.64460 -16.34162 -15.34947 -15.25500 -15.00633 -14.68590 -14.28374 -14.22029 -13.93836 -13.79224 -13.44310 -13.36834 -13.17134 -12.80339 -12.06581 -11.85594 -11.84694 -11.50467 -11.42126 -11.06347 -11.05717 -10.96011 -10.71838 -10.53655 -10.33302 -9.79642 -9.76394 -9.28759 -8.98668 -8.91977 -8.87059 -8.50780 -8.13972 -7.08003 -6.12196 -4.17788 0.51042 1.05089 1.47363 2.17606 2.28225 2.69621 3.17968 3.27360 3.34667 3.38963 3.41832 4.21159 4.37096 4.46610 4.62315 4.66116 4.82550 4.91716 5.05682 5.10877 5.16834 5.26237 5.32054 5.42825 5.49467 5.60211 5.75611 5.81601 6.02009 6.04823 6.06842 6.18235 6.24114 6.26201 6.38879 6.41821 6.60388 6.68265 6.81334 6.96205 7.27879 7.38166 7.81900 8.29888 8.43264 8.84625 9.49489 10.96769 Molecular weight = 315.11amu Principal moments of inertia in cm(-1) A = 0.015893 B = 0.004050 C = 0.003386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1761.342630 B = 6912.437956 C = 8267.721818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.074 3.926 3 Si 0.888 3.112 4 H -0.279 1.279 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.487 4.487 8 H 0.062 0.938 9 C 0.054 3.946 10 C -0.032 4.032 11 S -0.212 6.212 12 C -0.045 4.045 13 C 0.014 3.986 14 C -0.028 4.028 15 N -0.264 5.264 16 N -0.081 5.081 17 N -0.238 5.238 18 C 0.113 3.887 19 C -0.121 4.121 20 C -0.101 4.101 21 C -0.108 4.108 22 C -0.111 4.111 23 C -0.098 4.098 24 C -0.205 4.205 25 C -0.145 4.145 26 H 0.260 0.740 27 H 0.089 0.911 28 H 0.051 0.949 29 H 0.110 0.890 30 H 0.089 0.911 31 H 0.197 0.803 32 H 0.165 0.835 33 H 0.138 0.862 34 H 0.131 0.869 35 H 0.134 0.866 36 H 0.135 0.865 37 H 0.067 0.933 38 H 0.080 0.920 39 H 0.085 0.915 40 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.671 -15.773 -5.305 16.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.129 4.129 3 Si 0.715 3.285 4 H -0.204 1.204 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.524 4.524 8 H 0.080 0.920 9 C 0.052 3.948 10 C -0.180 4.180 11 S 0.019 5.981 12 C -0.195 4.195 13 C -0.116 4.116 14 C -0.186 4.186 15 N -0.130 5.130 16 N -0.059 5.059 17 N -0.027 5.027 18 C 0.022 3.978 19 C -0.142 4.142 20 C -0.120 4.120 21 C -0.127 4.127 22 C -0.130 4.130 23 C -0.118 4.118 24 C -0.243 4.243 25 C -0.185 4.185 26 H 0.070 0.930 27 H 0.107 0.893 28 H 0.069 0.931 29 H 0.129 0.871 30 H 0.108 0.892 31 H 0.214 0.786 32 H 0.182 0.818 33 H 0.156 0.844 34 H 0.149 0.851 35 H 0.151 0.849 36 H 0.152 0.848 37 H 0.085 0.915 38 H 0.098 0.902 39 H 0.103 0.897 40 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 1.286 -16.277 -6.099 17.430 hybrid contribution -1.751 1.434 0.488 2.315 sum -0.465 -14.843 -5.611 15.875 Atomic orbital electron populations 1.69995 1.05869 1.26940 1.48967 1.24927 0.94769 0.98906 0.94329 0.86663 0.80046 0.83418 0.78346 1.20443 1.21259 1.19823 1.20367 0.92945 0.88400 1.50728 0.91957 1.18441 0.98303 0.94006 0.84029 1.23250 0.95202 1.00822 0.98709 1.87254 1.17945 1.78842 1.14093 1.21919 0.96950 1.04058 0.96537 1.21646 1.02545 0.85738 1.01687 1.23400 0.98024 1.01726 0.95455 1.75062 1.18136 0.97033 1.22741 1.78346 1.10648 1.17364 0.99540 1.44570 1.27187 1.08959 1.21981 1.17653 1.05677 0.84802 0.89654 1.22231 0.97626 1.03548 0.90828 1.21156 0.98840 0.91574 1.00407 1.21401 0.98341 0.97556 0.95386 1.21046 0.99778 0.98472 0.93699 1.21018 0.99474 0.90302 1.01035 1.23038 0.98576 0.95672 1.07006 1.22579 0.92162 1.01167 1.02626 0.92990 0.89266 0.93058 0.87131 0.89246 0.78601 0.81795 0.84426 0.85139 0.84861 0.84755 0.91467 0.90187 0.89696 0.91809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.46 12.90 55.43 0.71 -22.75 16 2 C 0.07 1.92 5.39 -17.82 -0.10 1.82 16 3 Si 0.89 20.54 29.55 -169.99 -5.02 15.51 16 4 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 5 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 7 C -0.49 -12.50 8.49 -34.44 -0.29 -12.80 16 8 H 0.06 1.66 7.82 -52.49 -0.41 1.25 16 9 C 0.05 1.22 1.34 -155.67 -0.21 1.01 16 10 C -0.03 -0.63 5.80 37.16 0.22 -0.41 16 11 S -0.21 -3.80 18.93 -107.50 -2.03 -5.84 16 12 C -0.05 -0.64 5.42 36.00 0.20 -0.45 16 13 C 0.01 0.21 6.09 -81.71 -0.50 -0.29 16 14 C -0.03 -0.42 11.99 -17.73 -0.21 -0.63 16 15 N -0.26 -4.44 12.39 30.24 0.37 -4.07 16 16 N -0.08 -1.35 12.85 60.35 0.78 -0.58 16 17 N -0.24 -3.64 3.50 -6.77 -0.02 -3.66 16 18 C 0.11 1.51 6.27 -83.57 -0.52 0.98 16 19 C -0.12 -1.54 8.34 -39.41 -0.33 -1.87 16 20 C -0.10 -1.03 10.04 -39.61 -0.40 -1.42 16 21 C -0.11 -0.91 10.04 -39.55 -0.40 -1.31 16 22 C -0.11 -0.96 10.04 -39.61 -0.40 -1.36 16 23 C -0.10 -1.09 9.71 -39.41 -0.38 -1.47 16 24 C -0.21 -4.13 9.96 -26.69 -0.27 -4.39 16 25 C -0.15 -3.12 9.40 -26.69 -0.25 -3.37 16 26 H 0.26 6.71 8.32 -40.82 -0.34 6.37 16 27 H 0.09 1.95 8.14 -51.92 -0.42 1.52 16 28 H 0.05 0.90 8.09 -51.92 -0.42 0.48 16 29 H 0.11 1.43 8.14 -51.92 -0.42 1.01 16 30 H 0.09 1.15 7.00 -51.92 -0.36 0.79 16 31 H 0.20 2.39 8.06 -52.49 -0.42 1.97 16 32 H 0.17 2.35 4.10 -42.99 -0.18 2.17 16 33 H 0.14 1.17 8.06 -52.49 -0.42 0.75 16 34 H 0.13 0.74 8.06 -52.48 -0.42 0.32 16 35 H 0.13 0.77 8.06 -52.48 -0.42 0.35 16 36 H 0.13 1.41 8.03 -52.49 -0.42 0.98 16 37 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 38 H 0.08 1.63 8.14 -51.93 -0.42 1.21 16 39 H 0.08 1.97 8.14 -51.93 -0.42 1.55 16 40 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 LS Contribution 354.21 15.07 5.34 5.34 Total: -1.00 -28.97 354.21 -8.87 -37.85 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: -5.15 Total: 4.14 kcal Atomic # 6 Polarization: -22.11 SS G_CDS: -3.84 Total: -25.95 kcal Atomic # 7 Polarization: -32.89 SS G_CDS: 1.84 Total: -31.05 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.51 kcal Atomic # 16 Polarization: -3.80 SS G_CDS: -2.03 Total: -5.84 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -28.97 -8.87 -37.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853774862.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 191.138 kcal (2) G-P(sol) polarization free energy of solvation -28.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 162.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.849 kcal (6) G-S(sol) free energy of system = (1) + (5) 153.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds