Wall clock time and date at job start Fri Apr 10 2020 23:07:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 120.00426 * 2 1 4 4 H 1.48505 * 109.46843 * 269.99869 * 3 2 1 5 5 H 1.48501 * 109.47209 * 29.99014 * 3 2 1 6 6 H 1.48492 * 109.47511 * 149.99580 * 3 2 1 7 7 C 1.37881 * 119.99700 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99695 * 173.68876 * 7 2 1 9 9 C 1.50696 * 120.00016 * 353.69329 * 7 2 1 10 10 C 1.52999 * 115.54822 * 85.64865 * 9 7 2 11 11 S 1.81401 * 109.47123 * 65.33237 * 10 9 7 12 12 C 1.81401 * 103.00206 * 179.97438 * 11 10 9 13 13 C 1.50695 * 109.47324 * 179.97438 * 12 11 10 14 14 C 1.35373 * 126.97450 * 270.04182 * 13 12 11 15 15 N 1.33778 * 106.53401 * 179.97438 * 14 13 12 16 16 N 1.28603 * 109.06564 * 359.97438 * 15 14 13 17 17 N 1.28731 * 110.23408 * 0.02562 * 16 15 14 18 18 C 1.40242 * 125.94395 * 179.97438 * 17 16 15 19 19 C 1.38827 * 120.06703 * 144.74737 * 18 17 16 20 20 C 1.38122 * 119.93461 * 179.67619 * 19 18 17 21 21 C 1.38276 * 120.06437 * 0.63008 * 20 19 18 22 22 C 1.38273 * 120.13105 * 359.67150 * 21 20 19 23 23 C 1.38120 * 120.06546 * 359.97438 * 22 21 20 24 24 C 1.52999 * 117.50040 * 231.31578 * 9 7 2 25 25 C 1.52995 * 117.50017 * 299.97917 * 9 7 2 26 26 H 0.96998 * 119.99715 * 355.02624 * 1 2 3 27 27 H 1.09001 * 109.47668 * 305.32975 * 10 9 7 28 28 H 1.09009 * 109.47101 * 185.32798 * 10 9 7 29 29 H 1.09000 * 109.47365 * 59.99730 * 12 11 10 30 30 H 1.09007 * 109.47103 * 300.00257 * 12 11 10 31 31 H 1.08000 * 126.73218 * 359.94533 * 14 13 12 32 32 H 1.08002 * 120.03056 * 359.97438 * 19 18 17 33 33 H 1.08002 * 119.96404 * 180.34152 * 20 19 18 34 34 H 1.08003 * 119.93234 * 179.69540 * 21 20 19 35 35 H 1.08003 * 119.96892 * 180.02562 * 22 21 20 36 36 H 1.07999 * 120.03586 * 180.02562 * 23 22 21 37 37 H 1.08997 * 117.50402 * 215.00269 * 24 9 7 38 38 H 1.09004 * 117.49794 * 0.03206 * 24 9 7 39 39 H 1.09000 * 117.50295 * 359.97438 * 25 9 7 40 40 H 1.09003 * 117.50373 * 144.97559 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6527 0.6998 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0796 -1.1970 -0.1023 9 6 1.2578 -2.4951 0.1445 10 6 0.7095 -3.0885 -1.1548 11 16 2.0893 -3.5561 -2.2356 12 6 1.2525 -4.2280 -3.6982 13 6 2.2812 -4.6678 -4.7077 14 6 2.8229 -3.9194 -5.6972 15 7 3.6852 -4.7111 -6.3448 16 7 3.6815 -5.8741 -5.7958 17 7 2.8549 -5.8980 -4.8092 18 6 2.5913 -7.0000 -3.9827 19 6 2.3226 -6.8094 -2.6341 20 6 2.0567 -7.8961 -1.8240 21 6 2.0707 -9.1738 -2.3523 22 6 2.3442 -9.3673 -3.6939 23 6 2.6037 -8.2839 -4.5104 24 6 1.7409 -3.4719 1.2185 25 6 0.4341 -2.6998 1.4174 26 1 -0.4849 0.8369 0.0728 27 1 0.0881 -2.3481 -1.6586 28 1 0.1111 -3.9708 -0.9273 29 1 0.6173 -3.4594 -4.1385 30 1 0.6407 -5.0817 -3.4066 31 1 2.6020 -2.8861 -5.9203 32 1 2.3167 -5.8120 -2.2198 33 1 1.8421 -7.7479 -0.7759 34 1 1.8674 -10.0224 -1.7159 35 1 2.3541 -10.3664 -4.1039 36 1 2.8168 -8.4355 -5.5583 37 1 1.6680 -4.5371 0.9995 38 1 2.5985 -3.1732 1.8214 39 1 0.4326 -1.8937 2.1511 40 1 -0.4987 -3.2569 1.3293 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000853774862.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:07:16 Heat of formation + Delta-G solvation = 139.792447 kcal Electronic energy + Delta-G solvation = -23088.922384 eV Core-core repulsion = 19804.588525 eV Total energy + Delta-G solvation = -3284.333859 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.110 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -44.59767 -40.22959 -38.39759 -35.76914 -34.24109 -33.97055 -31.95747 -30.90510 -29.59914 -28.65825 -27.29667 -25.11066 -24.31837 -22.89157 -22.78786 -21.94759 -21.05833 -19.32816 -18.17204 -17.84926 -17.47737 -16.79886 -16.58730 -16.21763 -15.98119 -15.60985 -15.36130 -15.09985 -15.00758 -14.78531 -14.53514 -14.21181 -13.94695 -13.64225 -13.33679 -12.97200 -12.92481 -12.80667 -12.59709 -12.37783 -12.31469 -12.18033 -12.01382 -11.73340 -11.51774 -11.21646 -10.72288 -10.45665 -10.18574 -10.06620 -9.83213 -9.74632 -8.47623 -8.09913 -6.18677 -0.46392 0.27893 0.36784 1.04188 1.18889 1.41075 1.44995 1.47301 1.52459 1.80171 2.45319 2.63566 3.09690 3.19961 3.44014 3.57238 3.71469 3.83064 3.86982 4.13651 4.19900 4.22755 4.31886 4.36413 4.38649 4.45228 4.56533 4.63558 4.64862 4.70760 4.97406 5.00026 5.00961 5.04041 5.27807 5.28794 5.30345 5.46201 5.55370 5.62131 5.66779 5.80392 5.92154 6.40848 6.85145 7.24569 7.49645 8.97902 Molecular weight = 315.11amu Principal moments of inertia in cm(-1) A = 0.015893 B = 0.004050 C = 0.003386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1761.342630 B = 6912.437956 C = 8267.721818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.036 3.964 3 Si 0.935 3.065 4 H -0.279 1.279 5 H -0.283 1.283 6 H -0.275 1.275 7 C -0.496 4.496 8 H 0.043 0.957 9 C 0.026 3.974 10 C -0.019 4.019 11 S -0.239 6.239 12 C -0.025 4.025 13 C 0.005 3.995 14 C -0.031 4.031 15 N -0.290 5.290 16 N -0.100 5.100 17 N -0.231 5.231 18 C 0.078 3.922 19 C -0.137 4.137 20 C -0.105 4.105 21 C -0.095 4.095 22 C -0.102 4.102 23 C -0.106 4.106 24 C -0.183 4.183 25 C -0.148 4.148 26 H 0.259 0.741 27 H 0.063 0.937 28 H 0.075 0.925 29 H 0.124 0.876 30 H 0.105 0.895 31 H 0.218 0.782 32 H 0.148 0.852 33 H 0.154 0.846 34 H 0.167 0.833 35 H 0.167 0.833 36 H 0.134 0.866 37 H 0.097 0.903 38 H 0.072 0.928 39 H 0.059 0.941 40 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.170 -18.194 -5.031 18.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.165 4.165 3 Si 0.762 3.238 4 H -0.205 1.205 5 H -0.209 1.209 6 H -0.200 1.200 7 C -0.533 4.533 8 H 0.062 0.938 9 C 0.025 3.975 10 C -0.167 4.167 11 S -0.008 6.008 12 C -0.175 4.175 13 C -0.126 4.126 14 C -0.190 4.190 15 N -0.154 5.154 16 N -0.078 5.078 17 N -0.020 5.020 18 C -0.011 4.011 19 C -0.159 4.159 20 C -0.123 4.123 21 C -0.113 4.113 22 C -0.121 4.121 23 C -0.126 4.126 24 C -0.220 4.220 25 C -0.188 4.188 26 H 0.068 0.932 27 H 0.081 0.919 28 H 0.093 0.907 29 H 0.142 0.858 30 H 0.123 0.877 31 H 0.235 0.765 32 H 0.165 0.835 33 H 0.172 0.828 34 H 0.185 0.815 35 H 0.185 0.815 36 H 0.152 0.848 37 H 0.115 0.885 38 H 0.090 0.910 39 H 0.078 0.922 40 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 0.801 -18.712 -5.818 19.612 hybrid contribution -1.562 2.038 0.416 2.601 sum -0.760 -16.673 -5.403 17.543 Atomic orbital electron populations 1.70061 1.06572 1.27258 1.50056 1.25441 0.95413 1.01121 0.94524 0.85928 0.78986 0.80847 0.78088 1.20482 1.20883 1.20025 1.20533 0.92321 0.90292 1.50194 0.93830 1.18530 0.99345 0.93952 0.85711 1.22917 0.95414 1.00838 0.97564 1.87282 1.18203 1.79183 1.16165 1.21847 0.96461 1.04740 0.94415 1.21776 1.02967 0.85970 1.01913 1.23857 0.97392 1.02580 0.95184 1.75026 1.19192 0.97497 1.23724 1.78274 1.11439 1.17559 1.00500 1.44771 1.26204 1.09564 1.21486 1.18018 1.08087 0.85056 0.89974 1.22151 0.99197 1.03655 0.90892 1.21437 0.98271 0.91656 1.00963 1.21832 0.95978 0.97871 0.95613 1.21467 0.97842 0.99126 0.93632 1.21204 0.99698 0.90188 1.01534 1.23024 0.97340 0.96810 1.04870 1.22502 0.93624 1.01071 1.01578 0.93150 0.91856 0.90688 0.85820 0.87661 0.76509 0.83477 0.82793 0.81547 0.81546 0.84846 0.88473 0.90957 0.92204 0.90014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -48.49 12.90 21.45 0.28 -48.21 16 2 C 0.04 1.87 5.39 84.66 0.46 2.33 16 3 Si 0.93 42.58 29.55 68.60 2.03 44.61 16 4 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 5 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 6 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 7 C -0.50 -25.76 8.49 25.60 0.22 -25.54 16 8 H 0.04 2.37 7.82 -2.91 -0.02 2.35 16 9 C 0.03 1.17 1.34 -52.93 -0.07 1.10 16 10 C -0.02 -0.74 5.80 71.98 0.42 -0.33 16 11 S -0.24 -8.45 18.93 -56.49 -1.07 -9.52 16 12 C -0.03 -0.70 5.42 71.23 0.39 -0.31 16 13 C 0.00 0.13 6.09 41.23 0.25 0.39 16 14 C -0.03 -0.93 11.99 83.73 1.00 0.07 16 15 N -0.29 -9.83 12.39 -58.24 -0.72 -10.55 16 16 N -0.10 -3.36 12.85 37.02 0.48 -2.89 16 17 N -0.23 -7.00 3.50 -175.34 -0.61 -7.61 16 18 C 0.08 2.02 6.27 38.08 0.24 2.26 16 19 C -0.14 -3.30 8.34 22.38 0.19 -3.12 16 20 C -0.10 -1.81 10.04 22.25 0.22 -1.59 16 21 C -0.09 -1.19 10.04 22.29 0.22 -0.97 16 22 C -0.10 -1.39 10.04 22.25 0.22 -1.17 16 23 C -0.11 -2.17 9.71 22.38 0.22 -1.95 16 24 C -0.18 -7.11 9.96 30.62 0.30 -6.80 16 25 C -0.15 -6.26 9.40 30.62 0.29 -5.97 16 26 H 0.26 13.48 8.32 -92.71 -0.77 12.71 16 27 H 0.06 2.76 8.14 -2.39 -0.02 2.74 16 28 H 0.07 2.50 8.09 -2.39 -0.02 2.48 16 29 H 0.12 3.06 8.14 -2.39 -0.02 3.04 16 30 H 0.11 2.56 7.00 -2.39 -0.02 2.54 16 31 H 0.22 5.17 8.06 -2.91 -0.02 5.15 16 32 H 0.15 4.06 4.10 -8.95 -0.04 4.02 16 33 H 0.15 2.09 8.06 -2.91 -0.02 2.07 16 34 H 0.17 0.93 8.06 -2.91 -0.02 0.91 16 35 H 0.17 1.14 8.06 -2.91 -0.02 1.12 16 36 H 0.13 2.67 8.03 -2.91 -0.02 2.64 16 37 H 0.10 3.17 8.14 -2.39 -0.02 3.15 16 38 H 0.07 2.89 8.14 -2.38 -0.02 2.87 16 39 H 0.06 2.80 8.14 -2.39 -0.02 2.78 16 40 H 0.08 3.11 8.14 -2.39 -0.02 3.09 16 Total: -1.00 -63.69 354.21 5.96 -57.73 By element: Atomic # 1 Polarization: 17.01 SS G_CDS: 1.02 Total: 18.03 kcal Atomic # 6 Polarization: -46.16 SS G_CDS: 4.57 Total: -41.59 kcal Atomic # 7 Polarization: -68.68 SS G_CDS: -0.58 Total: -69.26 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 2.03 Total: 44.61 kcal Atomic # 16 Polarization: -8.45 SS G_CDS: -1.07 Total: -9.52 kcal Total: -63.69 5.96 -57.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853774862.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 197.523 kcal (2) G-P(sol) polarization free energy of solvation -63.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.731 kcal (6) G-S(sol) free energy of system = (1) + (5) 139.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds