Wall clock time and date at job start Fri Apr 10 2020 23:07:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31561 * 1 3 3 Si 1.86800 * 119.99741 * 2 1 4 4 H 1.48504 * 109.46782 * 239.99839 * 3 2 1 5 5 H 1.48499 * 109.47050 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47379 * 120.00091 * 3 2 1 7 7 C 1.38651 * 119.99985 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99649 * 179.97438 * 7 2 1 9 9 O 1.34822 * 120.00101 * 0.02562 * 7 2 1 10 10 C 1.35759 * 116.99884 * 185.05534 * 9 7 2 11 11 C 1.38880 * 120.06717 * 354.45445 * 10 9 7 12 12 C 1.38096 * 119.92527 * 179.97438 * 11 10 9 13 13 C 1.38301 * 120.07519 * 359.97438 * 12 11 10 14 14 C 1.50697 * 119.93312 * 179.97438 * 13 12 11 15 15 N 1.46903 * 109.46968 * 89.99806 * 14 13 12 16 16 C 1.48551 * 111.00098 * 285.41662 * 15 14 13 17 17 C 1.54379 * 104.59676 * 200.96036 * 16 15 14 18 18 C 1.54260 * 105.05977 * 23.85397 * 17 16 15 19 19 C 1.48561 * 110.99514 * 169.99743 * 15 14 13 20 20 H 1.09000 * 110.51190 * 40.21631 * 19 15 14 21 21 C 1.52995 * 110.41512 * 277.81806 * 19 15 14 22 22 F 1.39901 * 109.47132 * 303.37779 * 21 19 15 23 23 F 1.39902 * 109.47394 * 183.37676 * 21 19 15 24 24 F 1.39903 * 109.47309 * 63.37801 * 21 19 15 25 25 C 1.38305 * 120.13425 * 0.27587 * 13 12 11 26 26 C 1.38099 * 120.07029 * 359.49096 * 25 13 12 27 27 H 0.96994 * 119.99724 * 359.97438 * 1 2 3 28 28 H 1.08000 * 120.03436 * 359.96462 * 11 10 9 29 29 H 1.08001 * 119.96113 * 180.02562 * 12 11 10 30 30 H 1.08995 * 109.47091 * 329.99926 * 14 13 12 31 31 H 1.08999 * 109.47231 * 209.99868 * 14 13 12 32 32 H 1.09005 * 110.40835 * 82.18489 * 16 15 14 33 33 H 1.08998 * 110.41720 * 319.74142 * 16 15 14 34 34 H 1.09005 * 110.32517 * 264.96018 * 17 16 15 35 35 H 1.08997 * 110.32754 * 142.75233 * 17 16 15 36 36 H 1.09005 * 110.32594 * 241.10452 * 18 17 16 37 37 H 1.08999 * 110.32575 * 118.89843 * 18 17 16 38 38 H 1.08005 * 119.96379 * 179.72542 * 25 13 12 39 39 H 1.07998 * 120.03595 * 180.25727 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 3.1033 1.6964 -1.2125 5 1 1.2845 2.7464 -0.0006 6 1 3.1033 1.6965 1.2124 7 6 2.0089 -1.2008 0.0005 8 1 3.0889 -1.2007 0.0001 9 8 1.3348 -2.3684 0.0005 10 6 2.0701 -3.5045 0.1077 11 6 3.4573 -3.4393 0.0950 12 6 4.2024 -4.5969 0.2047 13 6 3.5687 -5.8200 0.3276 14 6 4.3850 -7.0812 0.4465 15 7 4.6575 -7.3562 1.8636 16 6 5.6925 -6.4329 2.3956 17 6 6.2494 -7.1504 3.6439 18 6 5.9575 -8.6469 3.4096 19 6 5.2489 -8.7077 2.0393 20 1 5.9690 -8.9153 1.2479 21 6 4.1509 -9.7730 2.0533 22 9 3.2271 -9.4773 3.0614 23 9 4.7210 -11.0272 2.2963 24 9 3.5005 -9.7885 0.8147 25 6 2.1874 -5.8887 0.3354 26 6 1.4366 -4.7343 0.2309 27 1 -0.4849 0.8400 0.0004 28 1 3.9527 -2.4845 -0.0007 29 1 5.2812 -4.5468 0.1953 30 1 5.3271 -6.9559 -0.0870 31 1 3.8309 -7.9146 0.0147 32 1 5.2442 -5.4790 2.6737 33 1 6.4824 -6.2825 1.6597 34 1 5.7382 -6.8010 4.5410 35 1 7.3230 -6.9829 3.7296 36 1 5.3031 -9.0320 4.1917 37 1 6.8879 -9.2140 3.3802 38 1 1.6954 -6.8457 0.4270 39 1 0.3580 -4.7882 0.2412 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000859629001.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:07:18 Heat of formation + Delta-G solvation = -150.580556 kcal Electronic energy + Delta-G solvation = -26404.838297 eV Core-core repulsion = 22091.010558 eV Total energy + Delta-G solvation = -4313.827739 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.119 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -50.15237 -47.71726 -47.56291 -39.57798 -38.71836 -36.53585 -32.94772 -32.12305 -30.65144 -30.11588 -29.02514 -25.81320 -25.29673 -24.18518 -22.05102 -21.40266 -21.17703 -20.33589 -18.64069 -18.31707 -17.97418 -17.72418 -16.95296 -16.09941 -15.06881 -14.90917 -14.71743 -14.57168 -14.52058 -14.39681 -14.07407 -13.97931 -13.87418 -13.74030 -13.63184 -13.54330 -13.08408 -12.82950 -12.66122 -12.65542 -12.15594 -11.74784 -11.65206 -11.47299 -11.33522 -11.20897 -10.86645 -10.75725 -10.62941 -10.60332 -10.43388 -9.33969 -8.86950 -8.75144 -8.16719 -7.18949 -6.45461 -4.04497 2.21870 2.24745 2.59628 3.12075 3.12869 3.16214 3.48844 3.70932 3.79048 3.95986 4.28700 4.46807 4.54187 4.61436 4.66657 4.92577 5.09088 5.13266 5.19461 5.25859 5.31902 5.37224 5.50060 5.62116 5.70672 5.75390 5.81914 5.84682 5.96881 6.21160 6.39130 6.52150 6.69828 6.75898 6.91800 7.05843 7.25947 7.38222 7.43955 7.82706 7.99329 8.99900 9.70376 10.72492 Molecular weight = 315.12amu Principal moments of inertia in cm(-1) A = 0.025817 B = 0.002963 C = 0.002791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.288461 B = 9448.573312 C =10030.782106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.862 5.862 2 C 0.040 3.960 3 Si 0.941 3.059 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.270 1.270 7 C -0.393 4.393 8 H 0.091 0.909 9 O -0.177 6.177 10 C 0.157 3.843 11 C -0.235 4.235 12 C -0.063 4.063 13 C -0.178 4.178 14 C 0.089 3.911 15 N -0.490 5.490 16 C 0.039 3.961 17 C -0.122 4.122 18 C -0.117 4.117 19 C 0.010 3.990 20 H 0.093 0.907 21 C 0.465 3.535 22 F -0.170 7.170 23 F -0.187 7.187 24 F -0.182 7.182 25 C -0.050 4.050 26 C -0.193 4.193 27 H 0.271 0.729 28 H 0.126 0.874 29 H 0.102 0.898 30 H 0.041 0.959 31 H 0.086 0.914 32 H 0.096 0.904 33 H 0.049 0.951 34 H 0.079 0.921 35 H 0.073 0.927 36 H 0.083 0.917 37 H 0.081 0.919 38 H 0.111 0.889 39 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.549 -16.810 4.907 22.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.497 5.497 2 C -0.165 4.165 3 Si 0.765 3.235 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.195 1.195 7 C -0.469 4.469 8 H 0.109 0.891 9 O -0.080 6.080 10 C 0.103 3.897 11 C -0.254 4.254 12 C -0.082 4.082 13 C -0.180 4.180 14 C -0.037 4.037 15 N -0.215 5.215 16 C -0.089 4.089 17 C -0.160 4.160 18 C -0.155 4.155 19 C -0.101 4.101 20 H 0.110 0.890 21 C 0.410 3.590 22 F -0.151 7.151 23 F -0.169 7.169 24 F -0.163 7.163 25 C -0.069 4.069 26 C -0.213 4.213 27 H 0.081 0.919 28 H 0.144 0.856 29 H 0.120 0.880 30 H 0.060 0.940 31 H 0.104 0.896 32 H 0.114 0.886 33 H 0.067 0.933 34 H 0.097 0.903 35 H 0.092 0.908 36 H 0.101 0.899 37 H 0.100 0.900 38 H 0.129 0.871 39 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 12.562 -16.543 5.146 21.400 hybrid contribution 1.020 0.586 -0.544 1.296 sum 13.582 -15.957 4.602 21.454 Atomic orbital electron populations 1.70030 1.05965 1.27797 1.45918 1.25288 0.95833 0.98825 0.96538 0.85788 0.78710 0.79812 0.79157 1.19523 1.20265 1.19496 1.21271 0.91747 0.80862 1.53015 0.89147 1.83982 1.34368 1.11469 1.78225 1.19403 0.90283 0.88031 0.91966 1.21100 0.93812 0.98745 1.11764 1.20552 0.97902 0.91849 0.97856 1.18895 0.93478 0.92937 1.12673 1.21270 0.98446 0.97528 0.86497 1.65374 1.38328 0.98687 1.19085 1.23154 0.92618 0.97490 0.95596 1.22307 1.01096 0.93515 0.99075 1.22322 1.00563 0.98435 0.94175 1.23789 0.92818 0.91527 1.01920 0.88960 1.20312 0.83320 0.81595 0.73767 1.93197 1.68252 1.93068 1.60621 1.93166 1.84778 1.44640 1.94281 1.93139 1.83331 1.96368 1.43455 1.20463 0.92805 0.96735 0.96920 1.20216 0.99608 0.90296 1.11153 0.91946 0.85648 0.88004 0.94049 0.89594 0.88582 0.93276 0.90251 0.90785 0.89877 0.89999 0.87123 0.86527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.31 13.67 55.48 0.76 -24.55 16 2 C 0.04 1.08 5.49 -17.51 -0.10 0.99 16 3 Si 0.94 20.39 29.55 -169.99 -5.02 15.36 16 4 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 5 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 6 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 7 C -0.39 -10.94 9.49 30.89 0.29 -10.65 16 8 H 0.09 2.31 5.20 -52.48 -0.27 2.04 16 9 O -0.18 -5.07 9.76 0.04 0.00 -5.07 16 10 C 0.16 3.79 6.65 -39.11 -0.26 3.53 16 11 C -0.23 -5.01 9.17 -39.40 -0.36 -5.37 16 12 C -0.06 -1.11 8.92 -39.61 -0.35 -1.46 16 13 C -0.18 -3.00 5.20 -104.58 -0.54 -3.54 16 14 C 0.09 1.18 4.90 -4.98 -0.02 1.16 16 15 N -0.49 -6.03 4.91 -223.57 -1.10 -7.12 16 16 C 0.04 0.41 5.70 -2.19 -0.01 0.40 16 17 C -0.12 -1.01 7.00 -25.35 -0.18 -1.19 16 18 C -0.12 -0.95 6.29 -25.34 -0.16 -1.11 16 19 C 0.01 0.10 2.35 -66.07 -0.16 -0.06 16 20 H 0.09 0.77 8.00 -51.93 -0.42 0.36 16 21 C 0.46 5.26 2.82 37.15 0.10 5.36 16 22 F -0.17 -2.22 16.48 2.25 0.04 -2.18 16 23 F -0.19 -1.98 17.11 2.25 0.04 -1.94 16 24 F -0.18 -2.26 15.01 2.25 0.03 -2.22 16 25 C -0.05 -0.92 9.69 -39.61 -0.38 -1.31 16 26 C -0.19 -4.14 9.99 -39.39 -0.39 -4.54 16 27 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 28 H 0.13 2.68 5.64 -52.49 -0.30 2.38 16 29 H 0.10 1.51 8.06 -52.49 -0.42 1.09 16 30 H 0.04 0.49 7.71 -51.93 -0.40 0.09 16 31 H 0.09 1.13 5.73 -51.93 -0.30 0.84 16 32 H 0.10 1.20 7.89 -51.93 -0.41 0.79 16 33 H 0.05 0.48 7.75 -51.93 -0.40 0.07 16 34 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.08 0.71 7.32 -51.93 -0.38 0.33 16 37 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.11 1.81 8.06 -52.48 -0.42 1.38 16 39 H 0.12 2.43 8.06 -52.49 -0.42 2.01 16 LS Contribution 333.61 15.07 5.03 5.03 Total: -1.00 -30.43 333.61 -7.29 -37.73 By element: Atomic # 1 Polarization: 7.28 SS G_CDS: -4.55 Total: 2.73 kcal Atomic # 6 Polarization: -15.25 SS G_CDS: -2.52 Total: -17.77 kcal Atomic # 7 Polarization: -31.33 SS G_CDS: -0.34 Total: -31.67 kcal Atomic # 8 Polarization: -5.07 SS G_CDS: 0.00 Total: -5.07 kcal Atomic # 9 Polarization: -6.45 SS G_CDS: 0.11 Total: -6.34 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -30.43 -7.29 -37.73 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000859629001.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.853 kcal (2) G-P(sol) polarization free energy of solvation -30.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds