Wall clock time and date at job start Fri Apr 10 2020 23:07:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31561 * 1 3 3 Si 1.86800 * 119.99741 * 2 1 4 4 H 1.48504 * 109.46782 * 239.99839 * 3 2 1 5 5 H 1.48499 * 109.47050 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47379 * 120.00091 * 3 2 1 7 7 C 1.38651 * 119.99985 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99649 * 179.97438 * 7 2 1 9 9 O 1.34822 * 120.00101 * 0.02562 * 7 2 1 10 10 C 1.35759 * 116.99884 * 185.05534 * 9 7 2 11 11 C 1.38880 * 120.06717 * 354.45445 * 10 9 7 12 12 C 1.38096 * 119.92527 * 179.97438 * 11 10 9 13 13 C 1.38301 * 120.07519 * 359.97438 * 12 11 10 14 14 C 1.50697 * 119.93312 * 179.97438 * 13 12 11 15 15 N 1.46903 * 109.46968 * 89.99806 * 14 13 12 16 16 C 1.48551 * 111.00098 * 285.41662 * 15 14 13 17 17 C 1.54379 * 104.59676 * 200.96036 * 16 15 14 18 18 C 1.54260 * 105.05977 * 23.85397 * 17 16 15 19 19 C 1.48561 * 110.99514 * 169.99743 * 15 14 13 20 20 H 1.09000 * 110.51190 * 40.21631 * 19 15 14 21 21 C 1.52995 * 110.41512 * 277.81806 * 19 15 14 22 22 F 1.39901 * 109.47132 * 303.37779 * 21 19 15 23 23 F 1.39902 * 109.47394 * 183.37676 * 21 19 15 24 24 F 1.39903 * 109.47309 * 63.37801 * 21 19 15 25 25 C 1.38305 * 120.13425 * 0.27587 * 13 12 11 26 26 C 1.38099 * 120.07029 * 359.49096 * 25 13 12 27 27 H 0.96994 * 119.99724 * 359.97438 * 1 2 3 28 28 H 1.08000 * 120.03436 * 359.96462 * 11 10 9 29 29 H 1.08001 * 119.96113 * 180.02562 * 12 11 10 30 30 H 1.08995 * 109.47091 * 329.99926 * 14 13 12 31 31 H 1.08999 * 109.47231 * 209.99868 * 14 13 12 32 32 H 1.09005 * 110.40835 * 82.18489 * 16 15 14 33 33 H 1.08998 * 110.41720 * 319.74142 * 16 15 14 34 34 H 1.09005 * 110.32517 * 264.96018 * 17 16 15 35 35 H 1.08997 * 110.32754 * 142.75233 * 17 16 15 36 36 H 1.09005 * 110.32594 * 241.10452 * 18 17 16 37 37 H 1.08999 * 110.32575 * 118.89843 * 18 17 16 38 38 H 1.08005 * 119.96379 * 179.72542 * 25 13 12 39 39 H 1.07998 * 120.03595 * 180.25727 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 3.1033 1.6964 -1.2125 5 1 1.2845 2.7464 -0.0006 6 1 3.1033 1.6965 1.2124 7 6 2.0089 -1.2008 0.0005 8 1 3.0889 -1.2007 0.0001 9 8 1.3348 -2.3684 0.0005 10 6 2.0701 -3.5045 0.1077 11 6 3.4573 -3.4393 0.0950 12 6 4.2024 -4.5969 0.2047 13 6 3.5687 -5.8200 0.3276 14 6 4.3850 -7.0812 0.4465 15 7 4.6575 -7.3562 1.8636 16 6 5.6925 -6.4329 2.3956 17 6 6.2494 -7.1504 3.6439 18 6 5.9575 -8.6469 3.4096 19 6 5.2489 -8.7077 2.0393 20 1 5.9690 -8.9153 1.2479 21 6 4.1509 -9.7730 2.0533 22 9 3.2271 -9.4773 3.0614 23 9 4.7210 -11.0272 2.2963 24 9 3.5005 -9.7885 0.8147 25 6 2.1874 -5.8887 0.3354 26 6 1.4366 -4.7343 0.2309 27 1 -0.4849 0.8400 0.0004 28 1 3.9527 -2.4845 -0.0007 29 1 5.2812 -4.5468 0.1953 30 1 5.3271 -6.9559 -0.0870 31 1 3.8309 -7.9146 0.0147 32 1 5.2442 -5.4790 2.6737 33 1 6.4824 -6.2825 1.6597 34 1 5.7382 -6.8010 4.5410 35 1 7.3230 -6.9829 3.7296 36 1 5.3031 -9.0320 4.1917 37 1 6.8879 -9.2140 3.3802 38 1 1.6954 -6.8457 0.4270 39 1 0.3580 -4.7882 0.2412 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000859629001.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:07:18 Heat of formation + Delta-G solvation = -169.193912 kcal Electronic energy + Delta-G solvation = -26405.645433 eV Core-core repulsion = 22091.010558 eV Total energy + Delta-G solvation = -4314.634875 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.119 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -51.03816 -48.59340 -48.48664 -40.92245 -40.01113 -38.17098 -34.46607 -33.65728 -31.84438 -31.32994 -30.35533 -27.53231 -26.44097 -25.35122 -23.65051 -22.46474 -21.98577 -21.66275 -19.83006 -19.51852 -19.18719 -18.79623 -18.57059 -17.02474 -16.44200 -16.35929 -16.13104 -15.64487 -15.46637 -15.46323 -15.43788 -15.19457 -15.03104 -14.91878 -14.76173 -14.65319 -14.39215 -14.10808 -14.04752 -13.59806 -13.53332 -13.21783 -12.90903 -12.55977 -12.39888 -12.35431 -12.21685 -12.14909 -12.10746 -11.90579 -11.47586 -11.16067 -10.78141 -9.78272 -9.65382 -8.91419 -8.46340 -6.14918 0.60861 0.66072 1.35362 1.46212 1.52047 1.75499 2.18502 2.54894 2.83218 2.91794 3.00822 3.20189 3.52572 3.53509 3.67821 3.76535 3.93345 4.05189 4.11178 4.20630 4.24900 4.37297 4.49267 4.59939 4.64568 4.68920 4.77970 4.90102 5.02191 5.07739 5.09613 5.14386 5.23562 5.31086 5.54967 5.69452 5.71500 5.77708 5.90809 6.03305 6.22839 6.98074 7.79488 8.76922 Molecular weight = 315.12amu Principal moments of inertia in cm(-1) A = 0.025817 B = 0.002963 C = 0.002791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.288461 B = 9448.573312 C =10030.782106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.024 4.024 3 Si 1.019 2.981 4 H -0.256 1.256 5 H -0.273 1.273 6 H -0.256 1.256 7 C -0.414 4.414 8 H 0.103 0.897 9 O -0.234 6.234 10 C 0.116 3.884 11 C -0.241 4.241 12 C -0.054 4.054 13 C -0.151 4.151 14 C 0.092 3.908 15 N -0.514 5.514 16 C 0.035 3.965 17 C -0.116 4.116 18 C -0.114 4.114 19 C 0.015 3.985 20 H 0.118 0.882 21 C 0.460 3.540 22 F -0.185 7.185 23 F -0.183 7.183 24 F -0.190 7.190 25 C -0.051 4.051 26 C -0.207 4.207 27 H 0.272 0.728 28 H 0.121 0.879 29 H 0.142 0.858 30 H 0.068 0.932 31 H 0.090 0.910 32 H 0.072 0.928 33 H 0.068 0.932 34 H 0.070 0.930 35 H 0.098 0.902 36 H 0.074 0.926 37 H 0.109 0.891 38 H 0.134 0.866 39 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.449 -18.569 5.227 26.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.221 4.221 3 Si 0.838 3.162 4 H -0.180 1.180 5 H -0.198 1.198 6 H -0.181 1.181 7 C -0.490 4.490 8 H 0.121 0.879 9 O -0.141 6.141 10 C 0.065 3.935 11 C -0.260 4.260 12 C -0.073 4.073 13 C -0.152 4.152 14 C -0.035 4.035 15 N -0.239 5.239 16 C -0.092 4.092 17 C -0.154 4.154 18 C -0.152 4.152 19 C -0.095 4.095 20 H 0.136 0.864 21 C 0.406 3.594 22 F -0.166 7.166 23 F -0.164 7.164 24 F -0.171 7.171 25 C -0.069 4.069 26 C -0.227 4.227 27 H 0.081 0.919 28 H 0.138 0.862 29 H 0.160 0.840 30 H 0.086 0.914 31 H 0.108 0.892 32 H 0.091 0.909 33 H 0.086 0.914 34 H 0.089 0.911 35 H 0.117 0.883 36 H 0.093 0.907 37 H 0.128 0.872 38 H 0.152 0.848 39 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 16.500 -18.365 5.474 25.288 hybrid contribution -0.082 0.728 -0.595 0.944 sum 16.418 -17.637 4.879 24.585 Atomic orbital electron populations 1.70189 1.08123 1.28866 1.48902 1.26623 0.96838 1.02829 0.95838 0.84641 0.77380 0.74148 0.80000 1.18018 1.19764 1.18052 1.21807 0.92571 0.81409 1.53261 0.87935 1.83947 1.36074 1.12653 1.81395 1.19918 0.91776 0.87747 0.94032 1.21232 0.92859 1.00121 1.11784 1.20910 0.99683 0.90624 0.96045 1.19417 0.93226 0.94562 1.08025 1.21242 0.99014 0.95270 0.87950 1.65189 1.40177 1.00479 1.18006 1.23203 0.92510 0.96411 0.97107 1.22290 1.02396 0.93205 0.97526 1.22378 1.01429 0.98591 0.92778 1.23894 0.92373 0.89362 1.03849 0.86406 1.20643 0.83423 0.82292 0.73085 1.93171 1.68988 1.93208 1.61253 1.93173 1.84566 1.44466 1.94208 1.93121 1.83646 1.96442 1.43932 1.20775 0.93738 0.96426 0.95968 1.20414 0.99771 0.90753 1.11714 0.91861 0.86157 0.84045 0.91419 0.89205 0.90907 0.91401 0.91139 0.88310 0.90706 0.87210 0.84837 0.87370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.26 13.67 21.61 0.30 -56.96 16 2 C -0.02 -1.37 5.49 84.83 0.47 -0.91 16 3 Si 1.02 42.74 29.55 68.60 2.03 44.77 16 4 H -0.26 -10.01 7.11 99.48 0.71 -9.30 16 5 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 6 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 7 C -0.41 -24.25 9.49 67.92 0.64 -23.61 16 8 H 0.10 5.44 5.20 -2.91 -0.02 5.43 16 9 O -0.23 -14.31 9.76 -22.76 -0.22 -14.53 16 10 C 0.12 5.84 6.65 22.58 0.15 5.99 16 11 C -0.24 -10.31 9.17 22.39 0.21 -10.11 16 12 C -0.05 -1.78 8.92 22.25 0.20 -1.58 16 13 C -0.15 -4.67 5.20 -19.83 -0.10 -4.78 16 14 C 0.09 2.06 4.90 85.56 0.42 2.48 16 15 N -0.51 -10.75 4.91 -861.26 -4.23 -14.98 16 16 C 0.03 0.61 5.70 86.45 0.49 1.10 16 17 C -0.12 -1.48 7.00 31.49 0.22 -1.26 16 18 C -0.11 -1.38 6.29 31.49 0.20 -1.18 16 19 C 0.02 0.24 2.35 45.06 0.11 0.35 16 20 H 0.12 1.32 8.00 -2.39 -0.02 1.30 16 21 C 0.46 9.11 2.82 71.98 0.20 9.32 16 22 F -0.18 -4.50 16.48 44.97 0.74 -3.75 16 23 F -0.18 -3.35 17.11 44.97 0.77 -2.58 16 24 F -0.19 -4.22 15.01 44.97 0.67 -3.54 16 25 C -0.05 -1.80 9.69 22.25 0.22 -1.58 16 26 C -0.21 -9.19 9.99 22.39 0.22 -8.96 16 27 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 28 H 0.12 5.20 5.64 -2.91 -0.02 5.18 16 29 H 0.14 3.55 8.06 -2.91 -0.02 3.53 16 30 H 0.07 1.22 7.71 -2.39 -0.02 1.20 16 31 H 0.09 2.01 5.73 -2.39 -0.01 2.00 16 32 H 0.07 1.62 7.89 -2.38 -0.02 1.61 16 33 H 0.07 0.95 7.75 -2.39 -0.02 0.93 16 34 H 0.07 1.03 8.14 -2.38 -0.02 1.01 16 35 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.07 1.06 7.32 -2.38 -0.02 1.04 16 37 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 38 H 0.13 4.12 8.06 -2.91 -0.02 4.10 16 39 H 0.11 4.83 8.06 -2.91 -0.02 4.81 16 Total: -1.00 -71.68 333.61 4.78 -66.90 By element: Atomic # 1 Polarization: 18.32 SS G_CDS: 1.08 Total: 19.40 kcal Atomic # 6 Polarization: -38.37 SS G_CDS: 3.64 Total: -34.73 kcal Atomic # 7 Polarization: -68.01 SS G_CDS: -3.93 Total: -71.94 kcal Atomic # 8 Polarization: -14.31 SS G_CDS: -0.22 Total: -14.53 kcal Atomic # 9 Polarization: -12.06 SS G_CDS: 2.19 Total: -9.87 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 2.03 Total: 44.77 kcal Total: -71.68 4.78 -66.90 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000859629001.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.296 kcal (2) G-P(sol) polarization free energy of solvation -71.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds