Wall clock time and date at job start Fri Apr 10 2020 23:07:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86806 * 119.99813 * 2 1 4 4 H 1.48501 * 109.46867 * 86.30719 * 3 2 1 5 5 H 1.48503 * 109.46909 * 206.30706 * 3 2 1 6 6 H 1.48499 * 109.47109 * 326.30851 * 3 2 1 7 7 C 1.37874 * 120.00044 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99844 * 3.55175 * 7 2 1 9 9 C 1.50697 * 119.99858 * 183.56306 * 7 2 1 10 10 C 1.53000 * 115.55041 * 272.56284 * 9 7 2 11 11 N 1.46899 * 109.47394 * 294.53430 * 10 9 7 12 12 C 1.46894 * 110.99961 * 183.66866 * 11 10 9 13 13 C 1.50705 * 109.46893 * 185.42964 * 12 11 10 14 14 C 1.38245 * 119.95999 * 255.83963 * 13 12 11 15 15 C 1.38135 * 120.08364 * 179.76385 * 14 13 12 16 16 C 1.38770 * 119.99083 * 0.53741 * 15 14 13 17 17 O 1.35899 * 120.03712 * 179.69901 * 16 15 14 18 18 C 1.42896 * 117.00252 * 0.02562 * 17 16 15 19 19 F 1.39891 * 109.47254 * 299.99891 * 18 17 16 20 20 F 1.39896 * 109.46980 * 60.00084 * 18 17 16 21 21 C 1.38665 * 119.91593 * 359.71690 * 16 15 14 22 22 C 1.38391 * 119.91891 * 0.02562 * 21 16 15 23 23 F 1.35101 * 119.99329 * 180.02562 * 22 21 16 24 24 C 1.53001 * 117.50273 * 126.89482 * 9 7 2 25 25 C 1.53006 * 117.50023 * 58.23576 * 9 7 2 26 26 H 0.97001 * 120.00203 * 359.97438 * 1 2 3 27 27 H 1.09003 * 109.46822 * 54.53496 * 10 9 7 28 28 H 1.08998 * 109.47072 * 174.52607 * 10 9 7 29 29 H 1.00902 * 110.99324 * 307.61796 * 11 10 9 30 30 H 1.09003 * 109.47180 * 305.42770 * 12 11 10 31 31 H 1.08995 * 109.47565 * 65.43297 * 12 11 10 32 32 H 1.08009 * 119.95566 * 0.02562 * 14 13 12 33 33 H 1.08004 * 120.00239 * 180.25126 * 15 14 13 34 34 H 1.09005 * 109.46719 * 180.02562 * 18 17 16 35 35 H 1.07995 * 120.04031 * 180.02562 * 21 16 15 36 36 H 1.09006 * 117.49579 * 0.02562 * 24 9 7 37 37 H 1.09004 * 117.50253 * 145.01295 * 24 9 7 38 38 H 1.09000 * 117.49773 * 214.97644 * 25 9 7 39 39 H 1.08995 * 117.49866 * 359.97438 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4184 2.0915 1.3972 5 1 3.5835 1.4190 -0.6205 6 1 1.4877 2.6289 -0.7766 7 6 2.0045 -1.1940 -0.0005 8 1 1.4660 -2.1284 -0.0589 9 6 3.5093 -1.1953 0.0806 10 6 4.2424 -1.0907 -1.2583 11 7 3.9764 -2.2941 -2.0576 12 6 4.7344 -2.2687 -3.3156 13 6 4.3367 -3.4478 -4.1656 14 6 5.1796 -4.5385 -4.2710 15 6 4.8154 -5.6228 -5.0456 16 6 3.6071 -5.6132 -5.7279 17 8 3.2507 -6.6768 -6.4950 18 6 4.1677 -7.7711 -6.5532 19 9 5.3901 -7.3282 -7.0695 20 9 4.3634 -8.2844 -5.2666 21 6 2.7642 -4.5169 -5.6263 22 6 3.1302 -3.4348 -4.8450 23 9 2.3098 -2.3661 -4.7445 24 6 4.1571 -2.0444 1.1761 25 6 4.1520 -0.5181 1.2928 26 1 -0.4850 0.8400 0.0004 27 1 3.8903 -0.2112 -1.7975 28 1 5.3140 -1.0024 -1.0798 29 1 4.1787 -3.1303 -1.5304 30 1 4.5177 -1.3447 -3.8518 31 1 5.8012 -2.3209 -3.0982 32 1 6.1222 -4.5446 -3.7437 33 1 5.4731 -6.4759 -5.1237 34 1 3.7624 -8.5509 -7.1982 35 1 1.8232 -4.5075 -6.1561 36 1 3.4948 -2.6025 1.8380 37 1 5.1057 -2.5283 0.9432 38 1 5.0973 0.0015 1.1365 39 1 3.4865 -0.0714 2.0313 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000865551043.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:07:20 Heat of formation + Delta-G solvation = -130.817944 kcal Electronic energy + Delta-G solvation = -25998.779639 eV Core-core repulsion = 21685.808871 eV Total energy + Delta-G solvation = -4312.970768 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.119 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.70703 -48.61982 -47.69345 -40.14062 -37.98303 -37.19998 -34.55450 -31.93057 -31.11614 -30.39776 -27.19734 -26.07345 -25.04860 -23.33532 -23.06552 -21.70267 -21.27685 -19.39866 -18.92713 -18.56476 -18.26682 -16.96312 -16.47896 -16.25344 -15.62289 -15.54006 -15.24550 -14.85457 -14.75503 -14.25976 -14.20902 -14.03761 -13.98655 -13.96133 -13.79344 -13.64956 -13.13840 -12.75310 -12.67723 -12.35597 -12.03052 -11.78418 -11.51782 -11.27554 -11.21847 -10.99732 -10.50476 -10.41642 -10.00490 -9.51665 -8.99156 -8.97356 -8.52132 -8.43916 -8.35138 -7.70880 -5.95490 -3.94617 1.04904 1.08485 2.16892 3.09015 3.36720 3.39303 3.45958 3.49384 3.91851 4.26434 4.37094 4.53920 4.54648 4.62534 4.73699 4.89862 5.00761 5.11578 5.25128 5.32527 5.53543 5.74452 5.85543 5.89547 5.90426 6.04990 6.09734 6.18787 6.21098 6.30048 6.39306 6.46908 6.53049 6.76990 6.86381 7.10885 7.22464 7.70313 7.85080 8.03350 8.66975 9.10371 9.68068 11.17339 Molecular weight = 315.12amu Principal moments of inertia in cm(-1) A = 0.022379 B = 0.003133 C = 0.002994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.862661 B = 8934.475241 C = 9349.778860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.075 3.925 3 Si 0.878 3.122 4 H -0.283 1.283 5 H -0.260 1.260 6 H -0.295 1.295 7 C -0.463 4.463 8 H 0.078 0.922 9 C 0.007 3.993 10 C 0.100 3.900 11 N -0.660 5.660 12 C 0.100 3.900 13 C -0.133 4.133 14 C -0.050 4.050 15 C -0.206 4.206 16 C 0.128 3.872 17 O -0.318 6.318 18 C 0.413 3.587 19 F -0.199 7.199 20 F -0.197 7.197 21 C -0.177 4.177 22 C 0.168 3.832 23 F -0.113 7.113 24 C -0.184 4.184 25 C -0.201 4.201 26 H 0.262 0.738 27 H 0.070 0.930 28 H 0.003 0.997 29 H 0.338 0.662 30 H 0.081 0.919 31 H 0.034 0.966 32 H 0.135 0.865 33 H 0.136 0.864 34 H 0.182 0.818 35 H 0.146 0.854 36 H 0.086 0.914 37 H 0.067 0.933 38 H 0.069 0.931 39 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.941 -14.128 -14.316 23.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.126 4.126 3 Si 0.707 3.293 4 H -0.209 1.209 5 H -0.185 1.185 6 H -0.222 1.222 7 C -0.500 4.500 8 H 0.096 0.904 9 C 0.006 3.994 10 C -0.029 4.029 11 N -0.290 5.290 12 C -0.029 4.029 13 C -0.134 4.134 14 C -0.068 4.068 15 C -0.225 4.225 16 C 0.085 3.915 17 O -0.236 6.236 18 C 0.323 3.677 19 F -0.181 7.181 20 F -0.179 7.179 21 C -0.197 4.197 22 C 0.148 3.852 23 F -0.091 7.091 24 C -0.222 4.222 25 C -0.239 4.239 26 H 0.071 0.929 27 H 0.088 0.912 28 H 0.021 0.979 29 H 0.156 0.844 30 H 0.099 0.901 31 H 0.052 0.948 32 H 0.153 0.847 33 H 0.154 0.846 34 H 0.199 0.801 35 H 0.164 0.836 36 H 0.105 0.895 37 H 0.085 0.915 38 H 0.087 0.913 39 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 11.033 -13.716 -14.685 22.924 hybrid contribution 1.416 0.826 0.502 1.715 sum 12.450 -12.890 -14.183 22.854 Atomic orbital electron populations 1.69895 1.06290 1.26695 1.51168 1.24926 0.94514 0.98750 0.94454 0.86882 0.80649 0.83884 0.77920 1.20893 1.18468 1.22221 1.20139 0.86096 0.94410 1.49377 0.90425 1.19436 0.95702 0.98904 0.85351 1.21774 0.94128 0.92334 0.94640 1.60230 1.58694 1.05234 1.04890 1.20761 0.95038 0.95289 0.91833 1.19981 0.94404 0.98366 1.00671 1.20708 0.98940 0.91078 0.96125 1.21449 0.96881 1.01601 1.02536 1.18370 0.93862 0.86841 0.92444 1.86604 1.45464 1.25981 1.65556 1.23361 0.76847 0.86790 0.80744 1.93098 1.47782 1.90521 1.86686 1.93114 1.95063 1.86974 1.42710 1.20241 1.02145 0.92238 1.05050 1.17048 0.88344 0.84203 0.95610 1.91615 1.70675 1.52706 1.94121 1.22805 1.00734 0.92709 1.05922 1.22979 1.01258 0.95052 1.04639 0.92852 0.91172 0.97930 0.84437 0.90114 0.94765 0.84678 0.84643 0.80140 0.83632 0.89541 0.91496 0.91261 0.89397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.08 13.96 55.43 0.77 -27.31 16 2 C 0.07 2.17 5.47 -17.82 -0.10 2.07 16 3 Si 0.88 22.06 24.96 -169.99 -4.24 17.82 16 4 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 5 H -0.26 -6.13 5.65 56.52 0.32 -5.81 16 6 H -0.30 -7.52 7.11 56.52 0.40 -7.11 16 7 C -0.46 -13.02 9.33 -34.44 -0.32 -13.34 16 8 H 0.08 2.43 8.06 -52.49 -0.42 2.01 16 9 C 0.01 0.17 0.90 -155.66 -0.14 0.03 16 10 C 0.10 2.06 5.10 -3.82 -0.02 2.04 16 11 N -0.66 -12.47 6.39 -115.06 -0.74 -13.20 16 12 C 0.10 1.54 5.50 -4.98 -0.03 1.51 16 13 C -0.13 -1.91 5.45 -104.53 -0.57 -2.48 16 14 C -0.05 -0.60 9.66 -39.62 -0.38 -0.98 16 15 C -0.21 -2.41 8.26 -39.42 -0.33 -2.74 16 16 C 0.13 1.58 6.48 -39.23 -0.25 1.32 16 17 O -0.32 -3.22 10.43 -19.42 -0.20 -3.42 16 18 C 0.41 2.84 5.98 101.05 0.60 3.45 16 19 F -0.20 -1.65 15.58 2.25 0.04 -1.61 16 20 F -0.20 -1.74 15.58 2.25 0.04 -1.71 16 21 C -0.18 -2.39 9.97 -39.37 -0.39 -2.78 16 22 C 0.17 2.61 7.24 -39.44 -0.29 2.33 16 23 F -0.11 -2.07 16.73 2.25 0.04 -2.03 16 24 C -0.18 -3.72 9.96 -26.69 -0.27 -3.98 16 25 C -0.20 -4.30 7.63 -26.69 -0.20 -4.50 16 26 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 27 H 0.07 1.58 6.58 -51.93 -0.34 1.23 16 28 H 0.00 0.05 8.09 -51.93 -0.42 -0.37 16 29 H 0.34 6.06 8.73 -39.29 -0.34 5.71 16 30 H 0.08 1.29 8.04 -51.93 -0.42 0.87 16 31 H 0.03 0.45 7.96 -51.93 -0.41 0.04 16 32 H 0.14 1.31 8.00 -52.48 -0.42 0.89 16 33 H 0.14 1.41 5.10 -52.48 -0.27 1.14 16 34 H 0.18 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.15 1.74 8.06 -52.49 -0.42 1.32 16 36 H 0.09 1.79 8.14 -51.93 -0.42 1.36 16 37 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 38 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 39 H 0.09 1.98 7.34 -51.93 -0.38 1.60 16 LS Contribution 337.24 15.07 5.08 5.08 Total: -1.00 -32.59 337.24 -6.66 -39.25 By element: Atomic # 1 Polarization: 9.95 SS G_CDS: -4.76 Total: 5.19 kcal Atomic # 6 Polarization: -15.37 SS G_CDS: -2.68 Total: -18.06 kcal Atomic # 7 Polarization: -40.55 SS G_CDS: 0.04 Total: -40.51 kcal Atomic # 8 Polarization: -3.22 SS G_CDS: -0.20 Total: -3.42 kcal Atomic # 9 Polarization: -5.46 SS G_CDS: 0.11 Total: -5.35 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -4.24 Total: 17.82 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -32.59 -6.66 -39.25 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000865551043.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.567 kcal (2) G-P(sol) polarization free energy of solvation -32.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds