Wall clock time and date at job start Fri Apr 10 2020 23:07:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86806 * 119.99813 * 2 1 4 4 H 1.48501 * 109.46867 * 86.30719 * 3 2 1 5 5 H 1.48503 * 109.46909 * 206.30706 * 3 2 1 6 6 H 1.48499 * 109.47109 * 326.30851 * 3 2 1 7 7 C 1.37874 * 120.00044 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99844 * 3.55175 * 7 2 1 9 9 C 1.50697 * 119.99858 * 183.56306 * 7 2 1 10 10 C 1.53000 * 115.55041 * 272.56284 * 9 7 2 11 11 N 1.46899 * 109.47394 * 294.53430 * 10 9 7 12 12 C 1.46894 * 110.99961 * 183.66866 * 11 10 9 13 13 C 1.50705 * 109.46893 * 185.42964 * 12 11 10 14 14 C 1.38245 * 119.95999 * 255.83963 * 13 12 11 15 15 C 1.38135 * 120.08364 * 179.76385 * 14 13 12 16 16 C 1.38770 * 119.99083 * 0.53741 * 15 14 13 17 17 O 1.35899 * 120.03712 * 179.69901 * 16 15 14 18 18 C 1.42896 * 117.00252 * 0.02562 * 17 16 15 19 19 F 1.39891 * 109.47254 * 299.99891 * 18 17 16 20 20 F 1.39896 * 109.46980 * 60.00084 * 18 17 16 21 21 C 1.38665 * 119.91593 * 359.71690 * 16 15 14 22 22 C 1.38391 * 119.91891 * 0.02562 * 21 16 15 23 23 F 1.35101 * 119.99329 * 180.02562 * 22 21 16 24 24 C 1.53001 * 117.50273 * 126.89482 * 9 7 2 25 25 C 1.53006 * 117.50023 * 58.23576 * 9 7 2 26 26 H 0.97001 * 120.00203 * 359.97438 * 1 2 3 27 27 H 1.09003 * 109.46822 * 54.53496 * 10 9 7 28 28 H 1.08998 * 109.47072 * 174.52607 * 10 9 7 29 29 H 1.00902 * 110.99324 * 307.61796 * 11 10 9 30 30 H 1.09003 * 109.47180 * 305.42770 * 12 11 10 31 31 H 1.08995 * 109.47565 * 65.43297 * 12 11 10 32 32 H 1.08009 * 119.95566 * 0.02562 * 14 13 12 33 33 H 1.08004 * 120.00239 * 180.25126 * 15 14 13 34 34 H 1.09005 * 109.46719 * 180.02562 * 18 17 16 35 35 H 1.07995 * 120.04031 * 180.02562 * 21 16 15 36 36 H 1.09006 * 117.49579 * 0.02562 * 24 9 7 37 37 H 1.09004 * 117.50253 * 145.01295 * 24 9 7 38 38 H 1.09000 * 117.49773 * 214.97644 * 25 9 7 39 39 H 1.08995 * 117.49866 * 359.97438 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4184 2.0915 1.3972 5 1 3.5835 1.4190 -0.6205 6 1 1.4877 2.6289 -0.7766 7 6 2.0045 -1.1940 -0.0005 8 1 1.4660 -2.1284 -0.0589 9 6 3.5093 -1.1953 0.0806 10 6 4.2424 -1.0907 -1.2583 11 7 3.9764 -2.2941 -2.0576 12 6 4.7344 -2.2687 -3.3156 13 6 4.3367 -3.4478 -4.1656 14 6 5.1796 -4.5385 -4.2710 15 6 4.8154 -5.6228 -5.0456 16 6 3.6071 -5.6132 -5.7279 17 8 3.2507 -6.6768 -6.4950 18 6 4.1677 -7.7711 -6.5532 19 9 5.3901 -7.3282 -7.0695 20 9 4.3634 -8.2844 -5.2666 21 6 2.7642 -4.5169 -5.6263 22 6 3.1302 -3.4348 -4.8450 23 9 2.3098 -2.3661 -4.7445 24 6 4.1571 -2.0444 1.1761 25 6 4.1520 -0.5181 1.2928 26 1 -0.4850 0.8400 0.0004 27 1 3.8903 -0.2112 -1.7975 28 1 5.3140 -1.0024 -1.0798 29 1 4.1787 -3.1303 -1.5304 30 1 4.5177 -1.3447 -3.8518 31 1 5.8012 -2.3209 -3.0982 32 1 6.1222 -4.5446 -3.7437 33 1 5.4731 -6.4759 -5.1237 34 1 3.7624 -8.5509 -7.1982 35 1 1.8232 -4.5075 -6.1561 36 1 3.4948 -2.6025 1.8380 37 1 5.1057 -2.5283 0.9432 38 1 5.0973 0.0015 1.1365 39 1 3.4865 -0.0714 2.0313 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000865551043.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:07:19 Heat of formation + Delta-G solvation = -153.075129 kcal Electronic energy + Delta-G solvation = -25999.744783 eV Core-core repulsion = 21685.808871 eV Total energy + Delta-G solvation = -4313.935912 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.119 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -50.30880 -49.89793 -48.30150 -41.04665 -39.25905 -38.53388 -35.91563 -34.12327 -32.18109 -31.47385 -28.40768 -27.55876 -26.43260 -24.65431 -24.10114 -23.23557 -22.43248 -20.78272 -20.23753 -19.29735 -18.88436 -18.37306 -17.87828 -17.31900 -17.09467 -16.74989 -16.59796 -16.13702 -15.65621 -15.54250 -15.49234 -15.24021 -14.91238 -14.89778 -14.75636 -14.66431 -14.62387 -14.43479 -13.87319 -13.55908 -13.41949 -13.09227 -12.91244 -12.60915 -12.44445 -12.28888 -12.25033 -12.10343 -11.82700 -11.47355 -10.86381 -10.55347 -10.25035 -10.00616 -9.46640 -9.08482 -8.19896 -6.22610 0.01036 0.08766 1.36876 1.40068 1.48779 1.52133 2.37267 2.43113 2.53886 3.12481 3.16119 3.34823 3.46171 3.57478 3.69282 3.70152 3.75790 3.85683 4.07244 4.16402 4.24663 4.41438 4.44276 4.51525 4.59935 4.68496 4.85595 4.88346 4.88814 4.92459 5.06447 5.12614 5.26027 5.41992 5.45443 5.56552 5.79309 5.90191 6.26822 6.43141 6.66534 6.84130 7.43747 8.97242 Molecular weight = 315.12amu Principal moments of inertia in cm(-1) A = 0.022379 B = 0.003133 C = 0.002994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.862661 B = 8934.475241 C = 9349.778860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.959 5.959 2 C 0.011 3.989 3 Si 0.940 3.060 4 H -0.273 1.273 5 H -0.230 1.230 6 H -0.303 1.303 7 C -0.457 4.457 8 H 0.024 0.976 9 C -0.022 4.022 10 C 0.110 3.890 11 N -0.685 5.685 12 C 0.104 3.896 13 C -0.145 4.145 14 C -0.040 4.040 15 C -0.203 4.203 16 C 0.130 3.870 17 O -0.325 6.325 18 C 0.407 3.593 19 F -0.206 7.206 20 F -0.208 7.208 21 C -0.188 4.188 22 C 0.136 3.864 23 F -0.141 7.141 24 C -0.163 4.163 25 C -0.196 4.196 26 H 0.261 0.739 27 H 0.046 0.954 28 H 0.037 0.963 29 H 0.343 0.657 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.166 0.834 33 H 0.153 0.847 34 H 0.238 0.762 35 H 0.151 0.849 36 H 0.072 0.928 37 H 0.106 0.894 38 H 0.103 0.897 39 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.719 -15.187 -14.787 26.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.184 4.184 3 Si 0.765 3.235 4 H -0.198 1.198 5 H -0.153 1.153 6 H -0.231 1.231 7 C -0.495 4.495 8 H 0.043 0.957 9 C -0.023 4.023 10 C -0.019 4.019 11 N -0.316 5.316 12 C -0.024 4.024 13 C -0.146 4.146 14 C -0.058 4.058 15 C -0.222 4.222 16 C 0.086 3.914 17 O -0.243 6.243 18 C 0.318 3.682 19 F -0.188 7.188 20 F -0.190 7.190 21 C -0.207 4.207 22 C 0.116 3.884 23 F -0.119 7.119 24 C -0.200 4.200 25 C -0.234 4.234 26 H 0.069 0.931 27 H 0.064 0.936 28 H 0.055 0.945 29 H 0.161 0.839 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.184 0.816 33 H 0.171 0.829 34 H 0.254 0.746 35 H 0.168 0.832 36 H 0.091 0.909 37 H 0.125 0.875 38 H 0.121 0.879 39 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 14.850 -14.806 -15.159 25.875 hybrid contribution 0.210 0.917 0.599 1.115 sum 15.060 -13.888 -14.560 25.134 Atomic orbital electron populations 1.70071 1.08443 1.27532 1.53965 1.25816 0.95186 1.02868 0.94524 0.85875 0.80474 0.78708 0.78398 1.19828 1.15264 1.23111 1.20312 0.89377 0.92153 1.47660 0.95744 1.19336 0.92801 1.02499 0.87700 1.21506 0.95415 0.92192 0.92768 1.60097 1.60706 1.04874 1.05961 1.20742 0.96350 0.95202 0.90109 1.20007 0.94514 0.99109 1.00996 1.21008 0.99413 0.89873 0.95511 1.21716 0.96694 1.01982 1.01760 1.18464 0.93652 0.87058 0.92212 1.86621 1.46739 1.26038 1.64860 1.24330 0.76357 0.86579 0.80917 1.93083 1.48398 1.90658 1.86661 1.93092 1.95101 1.86918 1.43880 1.20330 1.02852 0.92412 1.05104 1.17457 0.89076 0.84352 0.97511 1.91538 1.71661 1.54148 1.94574 1.22829 1.01588 0.92342 1.03230 1.23021 1.01899 0.96041 1.02404 0.93066 0.93553 0.94475 0.83888 0.91526 0.91459 0.81603 0.82941 0.74621 0.83160 0.90909 0.87544 0.87917 0.91206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -62.69 13.96 21.45 0.30 -62.39 16 2 C 0.01 0.69 5.47 84.65 0.46 1.15 16 3 Si 0.94 45.89 24.96 68.60 1.71 47.60 16 4 H -0.27 -12.77 7.11 99.48 0.71 -12.06 16 5 H -0.23 -10.01 5.65 99.48 0.56 -9.45 16 6 H -0.30 -15.11 7.11 99.48 0.71 -14.41 16 7 C -0.46 -26.58 9.33 25.60 0.24 -26.34 16 8 H 0.02 1.63 8.06 -2.91 -0.02 1.60 16 9 C -0.02 -0.99 0.90 -52.93 -0.05 -1.04 16 10 C 0.11 4.30 5.10 86.30 0.44 4.74 16 11 N -0.68 -25.14 6.39 -517.94 -3.31 -28.45 16 12 C 0.10 3.04 5.50 85.56 0.47 3.51 16 13 C -0.14 -4.03 5.45 -19.81 -0.11 -4.13 16 14 C -0.04 -0.85 9.66 22.25 0.21 -0.63 16 15 C -0.20 -4.27 8.26 22.37 0.18 -4.09 16 16 C 0.13 3.04 6.48 22.50 0.15 3.18 16 17 O -0.32 -5.94 10.43 -92.41 -0.96 -6.91 16 18 C 0.41 4.39 5.98 113.37 0.68 5.06 16 19 F -0.21 -2.83 15.58 44.97 0.70 -2.13 16 20 F -0.21 -3.14 15.58 44.97 0.70 -2.44 16 21 C -0.19 -5.12 9.97 22.41 0.22 -4.90 16 22 C 0.14 4.33 7.24 22.36 0.16 4.49 16 23 F -0.14 -5.47 16.73 44.97 0.75 -4.72 16 24 C -0.16 -6.11 9.96 30.62 0.30 -5.81 16 25 C -0.20 -7.74 7.63 30.62 0.23 -7.51 16 26 H 0.26 16.08 8.31 -92.71 -0.77 15.31 16 27 H 0.05 2.01 6.58 -2.39 -0.02 1.99 16 28 H 0.04 1.20 8.09 -2.39 -0.02 1.19 16 29 H 0.34 11.73 8.73 -89.69 -0.78 10.94 16 30 H 0.07 2.10 8.04 -2.39 -0.02 2.09 16 31 H 0.07 1.52 7.96 -2.39 -0.02 1.50 16 32 H 0.17 2.48 8.00 -2.91 -0.02 2.45 16 33 H 0.15 2.68 5.10 -2.91 -0.01 2.67 16 34 H 0.24 -0.18 8.14 -2.38 -0.02 -0.20 16 35 H 0.15 3.76 8.06 -2.91 -0.02 3.73 16 36 H 0.07 2.92 8.14 -2.38 -0.02 2.90 16 37 H 0.11 3.19 8.14 -2.38 -0.02 3.17 16 38 H 0.10 3.41 8.14 -2.39 -0.02 3.39 16 39 H 0.07 3.01 7.34 -2.39 -0.02 3.00 16 Total: -1.00 -75.59 337.24 3.66 -71.93 By element: Atomic # 1 Polarization: 19.64 SS G_CDS: 0.17 Total: 19.81 kcal Atomic # 6 Polarization: -35.92 SS G_CDS: 3.60 Total: -32.32 kcal Atomic # 7 Polarization: -87.82 SS G_CDS: -3.01 Total: -90.84 kcal Atomic # 8 Polarization: -5.94 SS G_CDS: -0.96 Total: -6.91 kcal Atomic # 9 Polarization: -11.44 SS G_CDS: 2.15 Total: -9.28 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 1.71 Total: 47.60 kcal Total: -75.59 3.66 -71.93 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000865551043.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.144 kcal (2) G-P(sol) polarization free energy of solvation -75.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds