Wall clock time and date at job start Fri Apr 10 2020 23:07:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86801 * 119.99881 * 2 1 4 4 H 1.48501 * 109.47054 * 272.89773 * 3 2 1 5 5 H 1.48497 * 109.47324 * 32.90277 * 3 2 1 6 6 H 1.48501 * 109.46722 * 152.90053 * 3 2 1 7 7 C 1.38817 * 119.99923 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00130 * 339.35621 * 7 2 1 9 9 N 1.36935 * 119.99782 * 159.36242 * 7 2 1 10 10 C 1.46925 * 120.62758 * 152.62208 * 9 7 2 11 11 C 1.53190 * 108.89356 * 126.30089 * 10 9 7 12 12 C 1.53352 * 109.15070 * 54.57285 * 11 10 9 13 13 O 1.45200 * 109.41906 * 178.67274 * 12 11 10 14 14 C 1.34747 * 117.00609 * 270.13102 * 13 12 11 15 15 O 1.21524 * 119.99735 * 0.02562 * 14 13 12 16 16 C 1.47290 * 120.00341 * 179.97438 * 14 13 12 17 17 C 1.41338 * 126.42140 * 359.68918 * 16 14 13 18 18 N 1.30439 * 108.00857 * 179.85065 * 17 16 14 19 19 N 1.39922 * 108.91830 * 0.41461 * 18 17 16 20 20 C 1.46505 * 125.74304 * 179.73751 * 19 18 17 21 21 F 1.39896 * 109.47246 * 119.99569 * 20 19 18 22 22 F 1.39904 * 109.46756 * 239.99387 * 20 19 18 23 23 C 1.34226 * 108.51312 * 359.72886 * 19 18 17 24 24 C 1.53037 * 109.61060 * 298.71684 * 12 11 10 25 25 C 1.46926 * 120.63420 * 332.60348 * 9 7 2 26 26 H 0.96999 * 119.99917 * 0.02562 * 1 2 3 27 27 H 1.09004 * 109.58551 * 246.15355 * 10 9 7 28 28 H 1.08997 * 109.59252 * 6.43657 * 10 9 7 29 29 H 1.09004 * 109.50240 * 174.65815 * 11 10 9 30 30 H 1.09004 * 109.49453 * 294.75209 * 11 10 9 31 31 H 1.09008 * 109.41936 * 58.75652 * 12 11 10 32 32 H 1.07996 * 126.00023 * 0.02562 * 17 16 14 33 33 H 1.08994 * 109.47333 * 359.97438 * 20 19 18 34 34 H 1.08010 * 126.29335 * 180.02562 * 23 19 18 35 35 H 1.09003 * 109.49698 * 301.42330 * 24 12 11 36 36 H 1.08997 * 109.50033 * 181.32375 * 24 12 11 37 37 H 1.09002 * 109.58248 * 353.41531 * 25 9 7 38 38 H 1.08994 * 109.58922 * 113.70036 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4363 2.0818 -1.3983 5 1 1.4797 2.6342 0.7605 6 1 3.5770 1.4232 0.6378 7 6 2.0103 -1.2022 -0.0005 8 1 1.5223 -2.1076 0.3288 9 7 3.3137 -1.2400 -0.4185 10 6 4.2349 -2.2633 0.0944 11 6 4.8749 -2.9934 -1.0905 12 6 5.5284 -1.9650 -2.0216 13 8 6.1641 -2.6534 -3.1308 14 6 7.4497 -3.0218 -2.9662 15 8 8.0238 -2.7750 -1.9240 16 6 8.1588 -3.7247 -4.0491 17 6 7.6241 -4.0848 -5.3069 18 7 8.5610 -4.6871 -5.9858 19 7 9.7196 -4.7491 -5.2037 20 6 10.9919 -5.3542 -5.6054 21 9 11.9995 -4.3841 -5.5762 22 9 11.3155 -6.3894 -4.7217 23 6 9.4691 -4.1607 -4.0236 24 6 4.4619 -1.0081 -2.5592 25 6 3.8176 -0.2585 -1.3888 26 1 -0.4850 0.8400 -0.0004 27 1 5.0117 -1.7882 0.6936 28 1 3.6843 -2.9758 0.7086 29 1 5.6299 -3.6892 -0.7244 30 1 4.1079 -3.5424 -1.6367 31 1 6.2778 -1.3994 -1.4678 32 1 6.6175 -3.8923 -5.6474 33 1 10.9013 -5.7541 -6.6153 34 1 10.1645 -4.0486 -3.2048 35 1 3.6989 -1.5759 -3.0917 36 1 4.9244 -0.2926 -3.2390 37 1 2.9910 0.3503 -1.7554 38 1 4.5584 0.3816 -0.9099 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000870245576.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:07:22 Heat of formation + Delta-G solvation = -71.350329 kcal Electronic energy + Delta-G solvation = -25828.298194 eV Core-core repulsion = 21537.826097 eV Total energy + Delta-G solvation = -4290.472097 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.118 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.98660 -48.08118 -41.88129 -40.10338 -37.68099 -35.94595 -33.44734 -32.66002 -31.13245 -30.58940 -30.34902 -27.17102 -25.27228 -23.70344 -22.89520 -22.15057 -21.71524 -20.60888 -19.62627 -19.22839 -18.45988 -18.16573 -17.13710 -17.01955 -16.32388 -15.94791 -15.52184 -15.17758 -15.04746 -14.72687 -14.40011 -14.22019 -14.14631 -13.85269 -13.73087 -13.46833 -13.17099 -12.89883 -12.83389 -12.45315 -12.05946 -11.86697 -11.76401 -11.32697 -10.87212 -10.78537 -10.55448 -10.53010 -10.44126 -10.14341 -9.86986 -9.75947 -9.50316 -9.41916 -8.67115 -7.04364 -5.97166 -3.33855 0.75317 1.06021 1.59506 2.67790 2.90538 2.98389 3.29824 3.46632 3.47924 3.50410 3.93563 4.01349 4.31410 4.50478 4.60585 4.76049 4.89398 5.11987 5.15070 5.21278 5.37280 5.54128 5.75976 5.77742 5.83172 5.97522 6.09757 6.14163 6.24424 6.33281 6.53346 6.57219 6.63206 6.66741 6.79717 6.92236 7.85580 7.92274 8.30344 8.89991 9.68613 10.05075 11.18616 Molecular weight = 315.12amu Principal moments of inertia in cm(-1) A = 0.037891 B = 0.002506 C = 0.002496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.777448 B =11169.376704 C =11213.133477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.024 3.976 3 Si 0.880 3.120 4 H -0.287 1.287 5 H -0.302 1.302 6 H -0.270 1.270 7 C -0.261 4.261 8 H 0.087 0.913 9 N -0.606 5.606 10 C 0.152 3.848 11 C -0.148 4.148 12 C 0.100 3.900 13 O -0.349 6.349 14 C 0.540 3.460 15 O -0.515 6.515 16 C -0.258 4.258 17 C 0.124 3.876 18 N -0.282 5.282 19 N -0.427 5.427 20 C 0.504 3.496 21 F -0.177 7.177 22 F -0.177 7.177 23 C 0.150 3.850 24 C -0.129 4.129 25 C 0.128 3.872 26 H 0.263 0.737 27 H 0.027 0.973 28 H 0.070 0.930 29 H 0.060 0.940 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.211 0.789 33 H 0.172 0.828 34 H 0.196 0.804 35 H 0.078 0.922 36 H 0.063 0.937 37 H 0.082 0.918 38 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.029 -10.434 -13.390 27.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.175 4.175 3 Si 0.710 3.290 4 H -0.215 1.215 5 H -0.230 1.230 6 H -0.195 1.195 7 C -0.390 4.390 8 H 0.105 0.895 9 N -0.329 5.329 10 C 0.025 3.975 11 C -0.187 4.187 12 C 0.046 3.954 13 O -0.265 6.265 14 C 0.384 3.616 15 O -0.405 6.405 16 C -0.271 4.271 17 C -0.066 4.066 18 N -0.099 5.099 19 N -0.215 5.215 20 C 0.370 3.630 21 F -0.159 7.159 22 F -0.158 7.158 23 C 0.003 3.997 24 C -0.168 4.168 25 C 0.002 3.998 26 H 0.073 0.927 27 H 0.045 0.955 28 H 0.089 0.911 29 H 0.079 0.921 30 H 0.092 0.908 31 H 0.099 0.901 32 H 0.227 0.773 33 H 0.189 0.811 34 H 0.213 0.787 35 H 0.097 0.903 36 H 0.082 0.918 37 H 0.100 0.900 38 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 22.489 -10.904 -14.152 28.722 hybrid contribution 0.414 1.426 1.021 1.802 sum 22.903 -9.478 -13.132 28.050 Atomic orbital electron populations 1.69833 1.05716 1.26612 1.52770 1.25286 0.95243 0.97577 0.99415 0.86989 0.80143 0.84703 0.77121 1.21483 1.23025 1.19471 1.18928 0.84822 0.94877 1.40330 0.89511 1.44428 1.08793 1.33219 1.46510 1.20882 0.92439 0.91445 0.92689 1.22526 1.00019 0.97935 0.98266 1.22963 0.93861 0.93280 0.85248 1.86574 1.24753 1.69315 1.45853 1.19803 0.80800 0.75842 0.85168 1.90844 1.67993 1.53214 1.28423 1.19559 0.94534 1.15483 0.97481 1.24509 0.99229 0.92136 0.90724 1.77302 0.90917 1.24177 1.17486 1.49679 1.11758 1.47151 1.12941 1.21033 0.72486 0.75512 0.93981 1.93161 1.60580 1.64902 1.97235 1.93164 1.92060 1.57736 1.72888 1.23117 0.96641 0.90289 0.89608 1.22236 0.97003 0.97660 0.99907 1.21382 0.97434 0.92044 0.88909 0.92700 0.95545 0.91136 0.92095 0.90808 0.90109 0.77282 0.81145 0.78671 0.90336 0.91816 0.90043 0.95341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.51 13.97 55.49 0.78 -26.74 16 2 C 0.02 0.68 5.23 -17.43 -0.09 0.59 16 3 Si 0.88 22.06 24.34 -169.99 -4.14 17.92 16 4 H -0.29 -6.87 6.62 56.52 0.37 -6.50 16 5 H -0.30 -7.72 7.11 56.52 0.40 -7.32 16 6 H -0.27 -6.66 6.63 56.52 0.37 -6.29 16 7 C -0.26 -7.22 10.04 -15.06 -0.15 -7.37 16 8 H 0.09 2.55 8.06 -52.49 -0.42 2.13 16 9 N -0.61 -14.28 2.77 -172.32 -0.48 -14.75 16 10 C 0.15 3.01 6.50 -3.71 -0.02 2.98 16 11 C -0.15 -2.55 5.75 -26.45 -0.15 -2.70 16 12 C 0.10 1.69 2.42 -26.53 -0.06 1.62 16 13 O -0.35 -5.23 9.73 -40.62 -0.40 -5.62 16 14 C 0.54 7.72 7.93 34.41 0.27 7.99 16 15 O -0.52 -8.59 16.16 -19.29 -0.31 -8.90 16 16 C -0.26 -2.90 6.13 -105.08 -0.64 -3.54 16 17 C 0.12 1.18 11.87 -16.97 -0.20 0.98 16 18 N -0.28 -2.64 12.50 30.87 0.39 -2.26 16 19 N -0.43 -3.56 3.84 -66.08 -0.25 -3.82 16 20 C 0.50 2.65 6.37 59.85 0.38 3.04 16 21 F -0.18 -1.12 17.47 2.25 0.04 -1.09 16 22 F -0.18 -1.13 17.47 2.25 0.04 -1.09 16 23 C 0.15 1.41 11.19 -16.55 -0.19 1.22 16 24 C -0.13 -2.27 5.74 -26.61 -0.15 -2.42 16 25 C 0.13 2.75 4.21 -3.71 -0.02 2.74 16 26 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 27 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.07 1.37 7.93 -51.93 -0.41 0.96 16 29 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 31 H 0.08 1.42 7.16 -51.92 -0.37 1.05 16 32 H 0.21 1.50 8.06 -52.49 -0.42 1.08 16 33 H 0.17 0.30 8.14 -51.93 -0.42 -0.13 16 34 H 0.20 1.47 8.06 -52.48 -0.42 1.05 16 35 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 36 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.08 1.89 4.49 -51.93 -0.23 1.66 16 38 H 0.03 0.61 7.07 -51.93 -0.37 0.24 16 LS Contribution 329.96 15.07 4.97 4.97 Total: -1.00 -33.25 329.96 -4.77 -38.02 By element: Atomic # 1 Polarization: 2.61 SS G_CDS: -4.38 Total: -1.77 kcal Atomic # 6 Polarization: 6.15 SS G_CDS: -1.03 Total: 5.12 kcal Atomic # 7 Polarization: -47.99 SS G_CDS: 0.43 Total: -47.57 kcal Atomic # 8 Polarization: -13.82 SS G_CDS: -0.71 Total: -14.53 kcal Atomic # 9 Polarization: -2.26 SS G_CDS: 0.08 Total: -2.18 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -4.14 Total: 17.92 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -33.25 -4.77 -38.02 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870245576.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.328 kcal (2) G-P(sol) polarization free energy of solvation -33.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds