Wall clock time and date at job start Fri Apr 10 2020 23:07:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30737 * 1 3 3 Si 1.86794 * 120.00631 * 2 1 4 4 H 1.48500 * 109.47595 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47067 * 300.00373 * 3 2 1 6 6 H 1.48505 * 109.46928 * 59.99663 * 3 2 1 7 7 C 1.40034 * 119.99823 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00012 * 170.10403 * 7 2 1 9 9 C 1.41550 * 119.99833 * 350.11068 * 7 2 1 10 10 C 1.41160 * 120.99582 * 153.79387 * 9 7 2 11 11 C 1.36589 * 119.12658 * 180.02562 * 10 9 7 12 12 N 1.32065 * 121.26146 * 0.02562 * 11 10 9 13 13 C 1.32495 * 122.22739 * 359.65763 * 12 11 10 14 14 N 1.39455 * 119.65157 * 180.32145 * 13 12 11 15 15 C 1.34775 * 120.00101 * 5.66783 * 14 13 12 16 16 O 1.21583 * 119.99860 * 5.06444 * 15 14 13 17 17 N 1.34776 * 120.00231 * 185.06533 * 15 14 13 18 18 C 1.46504 * 119.99671 * 180.02562 * 17 15 14 19 19 C 1.53000 * 109.47004 * 179.97438 * 18 17 15 20 20 O 1.42900 * 109.47175 * 64.99621 * 19 18 17 21 21 C 1.42899 * 114.00187 * 180.02562 * 20 19 18 22 22 C 1.53001 * 109.47486 * 180.02562 * 21 20 19 23 23 F 1.39899 * 109.46861 * 299.99977 * 22 21 20 24 24 F 1.39893 * 109.47119 * 59.99428 * 22 21 20 25 25 C 1.38646 * 120.70098 * 0.63151 * 13 12 11 26 26 H 0.97006 * 119.99686 * 359.97438 * 1 2 3 27 27 H 1.07998 * 120.43978 * 0.02562 * 10 9 7 28 28 H 1.08004 * 119.37253 * 180.02562 * 11 10 9 29 29 H 0.97002 * 120.00252 * 185.67620 * 14 13 12 30 30 H 0.96993 * 120.00327 * 359.97438 * 17 15 14 31 31 H 1.09003 * 109.47135 * 299.99459 * 18 17 15 32 32 H 1.08997 * 109.47418 * 60.00233 * 18 17 15 33 33 H 1.08997 * 109.47448 * 185.00129 * 19 18 17 34 34 H 1.09007 * 109.47163 * 305.00258 * 19 18 17 35 35 H 1.09002 * 109.47256 * 300.00015 * 21 20 19 36 36 H 1.09003 * 109.47248 * 59.99949 * 21 20 19 37 37 H 1.08996 * 109.47246 * 179.97438 * 22 21 20 38 38 H 1.08002 * 120.66382 * 179.68680 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6176 0.0000 4 1 3.7015 1.3462 0.0006 5 1 1.8828 2.3964 -1.2125 6 1 1.8827 2.3963 1.2125 7 6 2.0075 -1.2127 0.0005 8 1 3.0754 -1.2198 -0.1602 9 6 1.3154 -2.4294 0.2116 10 6 1.8138 -3.6472 -0.2993 11 6 1.1146 -4.7987 -0.0734 12 7 -0.0146 -4.7916 0.6114 13 6 -0.5260 -3.6799 1.1193 14 7 -1.7189 -3.7355 1.8395 15 6 -2.2856 -4.9271 2.1138 16 8 -1.7117 -5.9564 1.8148 17 7 -3.4885 -4.9778 2.7197 18 6 -4.1041 -6.2732 3.0183 19 6 -5.4547 -6.0505 3.7018 20 8 -6.3491 -5.4078 2.7913 21 6 -7.6461 -5.1518 3.3338 22 6 -8.5146 -4.4658 2.2774 23 9 -7.9207 -3.2571 1.8987 24 9 -8.6327 -5.2978 1.1589 25 6 0.1089 -2.4609 0.9370 26 1 -0.4850 0.8401 0.0004 27 1 2.7356 -3.6684 -0.8615 28 1 1.4924 -5.7328 -0.4622 29 1 -2.1409 -2.9164 2.1429 30 1 -3.9462 -4.1567 2.9586 31 1 -4.2526 -6.8273 2.0914 32 1 -3.4514 -6.8416 3.6809 33 1 -5.8720 -7.0112 4.0038 34 1 -5.3175 -5.4214 4.5813 35 1 -8.1091 -6.0937 3.6284 36 1 -7.5540 -4.5039 4.2055 37 1 -9.5040 -4.2711 2.6910 38 1 -0.3111 -1.5543 1.3471 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871729387.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:07:24 Heat of formation + Delta-G solvation = -136.678649 kcal Electronic energy + Delta-G solvation = -25269.658554 eV Core-core repulsion = 20976.353608 eV Total energy + Delta-G solvation = -4293.304946 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.118 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.15844 -47.19718 -39.76142 -38.56813 -37.83312 -34.71151 -34.06029 -33.65013 -30.95217 -30.42300 -29.17627 -27.87494 -25.94072 -23.33349 -23.14033 -21.88196 -21.44000 -20.04749 -18.25112 -18.07544 -17.75744 -17.59481 -16.98561 -16.50619 -16.25026 -15.82009 -15.24017 -14.91814 -14.56223 -14.27106 -14.13132 -14.04504 -13.83133 -13.54871 -13.36541 -13.10441 -12.86816 -12.66296 -12.55212 -12.50320 -12.11727 -11.59063 -11.39474 -11.25651 -11.14945 -10.86674 -10.23824 -10.20762 -10.06138 -9.69545 -9.51939 -9.34584 -8.74728 -7.91535 -7.66345 -6.96289 -6.68927 -4.57760 2.74581 2.84712 2.87835 3.04727 3.10223 3.10808 3.28881 3.52388 3.82120 3.88977 3.94987 4.08434 4.46599 4.60042 4.74442 4.76824 4.77590 4.87012 4.99059 5.04477 5.56012 5.74523 5.79239 6.02230 6.54846 6.60118 6.68087 6.76830 6.85877 7.00747 7.19328 7.35804 7.49255 7.55538 7.92937 8.17286 8.46519 8.52310 8.78499 8.81396 9.25087 9.79096 10.14600 Molecular weight = 315.12amu Principal moments of inertia in cm(-1) A = 0.014909 B = 0.002809 C = 0.002476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1877.604694 B = 9963.984729 C =11305.344871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.795 5.795 2 C 0.075 3.925 3 Si 0.914 3.086 4 H -0.260 1.260 5 H -0.274 1.274 6 H -0.272 1.272 7 C -0.454 4.454 8 H 0.081 0.919 9 C 0.143 3.857 10 C -0.283 4.283 11 C 0.119 3.881 12 N -0.553 5.553 13 C 0.355 3.645 14 N -0.668 5.668 15 C 0.693 3.307 16 O -0.537 6.537 17 N -0.751 5.751 18 C 0.145 3.855 19 C 0.051 3.949 20 O -0.371 6.371 21 C 0.008 3.992 22 C 0.270 3.730 23 F -0.197 7.197 24 F -0.199 7.199 25 C -0.243 4.243 26 H 0.280 0.720 27 H 0.101 0.899 28 H 0.122 0.878 29 H 0.404 0.596 30 H 0.394 0.606 31 H 0.074 0.926 32 H 0.082 0.918 33 H 0.069 0.931 34 H 0.060 0.940 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.122 0.878 38 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.463 -4.660 10.449 20.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C -0.143 4.143 3 Si 0.739 3.261 4 H -0.184 1.184 5 H -0.199 1.199 6 H -0.198 1.198 7 C -0.486 4.486 8 H 0.099 0.901 9 C 0.134 3.866 10 C -0.307 4.307 11 C -0.035 4.035 12 N -0.272 5.272 13 C 0.129 3.871 14 N -0.315 5.315 15 C 0.392 3.608 16 O -0.408 6.408 17 N -0.410 5.410 18 C 0.021 3.979 19 C -0.026 4.026 20 O -0.290 6.290 21 C -0.070 4.070 22 C 0.217 3.783 23 F -0.179 7.179 24 F -0.181 7.181 25 C -0.268 4.268 26 H 0.091 0.909 27 H 0.120 0.880 28 H 0.140 0.860 29 H 0.239 0.761 30 H 0.227 0.773 31 H 0.093 0.907 32 H 0.100 0.900 33 H 0.087 0.913 34 H 0.078 0.922 35 H 0.098 0.902 36 H 0.098 0.902 37 H 0.140 0.860 38 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -17.555 -6.272 10.079 21.192 hybrid contribution 0.164 2.396 0.232 2.412 sum -17.391 -3.877 10.311 20.586 Atomic orbital electron populations 1.69761 1.07545 1.29000 1.35796 1.25948 0.94869 1.01414 0.92095 0.86165 0.80821 0.80619 0.78538 1.18392 1.19914 1.19752 1.19607 0.95838 0.89997 1.43112 0.90054 1.17586 0.90328 0.92284 0.86395 1.21682 1.04227 0.94522 1.10264 1.21469 0.90628 0.96557 0.94865 1.67179 1.14750 1.28253 1.17003 1.17976 0.85707 0.90854 0.92585 1.42545 1.24348 1.07491 1.57157 1.16060 0.80823 0.84708 0.79181 1.91000 1.62481 1.31981 1.55356 1.45077 1.20357 1.08758 1.66762 1.21099 0.90060 0.85760 1.01031 1.22908 0.89842 0.97402 0.92404 1.88077 1.21296 1.80327 1.39301 1.23674 0.85936 1.01206 0.96139 1.22000 0.97111 0.76039 0.83178 1.93038 1.86261 1.46056 1.92520 1.93023 1.96974 1.72173 1.55887 1.21624 1.01080 0.95390 1.08750 0.90919 0.88041 0.86048 0.76122 0.77265 0.90744 0.90004 0.91280 0.92186 0.90214 0.90152 0.86041 0.84981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.93 10.70 55.55 0.59 -19.34 16 2 C 0.07 1.83 5.31 -17.34 -0.09 1.74 16 3 Si 0.91 18.25 29.57 -169.99 -5.03 13.22 16 4 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 5 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 6 H -0.27 -5.32 7.11 56.52 0.40 -4.91 16 7 C -0.45 -11.87 9.14 -37.65 -0.34 -12.22 16 8 H 0.08 2.04 7.87 -52.49 -0.41 1.63 16 9 C 0.14 3.84 5.60 -106.55 -0.60 3.24 16 10 C -0.28 -7.14 9.85 -39.07 -0.38 -7.53 16 11 C 0.12 2.96 11.10 -18.05 -0.20 2.76 16 12 N -0.55 -14.77 7.90 -12.76 -0.10 -14.87 16 13 C 0.35 8.99 7.41 -154.68 -1.15 7.84 16 14 N -0.67 -13.90 5.40 -15.86 -0.09 -13.99 16 15 C 0.69 14.06 8.51 -86.92 -0.74 13.32 16 16 O -0.54 -13.18 14.64 5.29 0.08 -13.10 16 17 N -0.75 -10.98 5.51 -65.22 -0.36 -11.34 16 18 C 0.15 1.75 6.06 -4.04 -0.02 1.72 16 19 C 0.05 0.41 6.07 37.16 0.23 0.64 16 20 O -0.37 -3.77 10.18 -35.23 -0.36 -4.13 16 21 C 0.01 0.05 6.16 37.16 0.23 0.28 16 22 C 0.27 1.94 5.63 37.16 0.21 2.15 16 23 F -0.20 -2.14 17.28 2.25 0.04 -2.10 16 24 F -0.20 -2.12 17.28 2.25 0.04 -2.08 16 25 C -0.24 -6.33 8.62 -38.46 -0.33 -6.66 16 26 H 0.28 6.35 8.29 -40.82 -0.34 6.01 16 27 H 0.10 2.34 8.06 -52.49 -0.42 1.92 16 28 H 0.12 2.65 8.06 -52.48 -0.42 2.23 16 29 H 0.40 6.99 8.72 -40.82 -0.36 6.63 16 30 H 0.39 4.80 8.49 -40.82 -0.35 4.45 16 31 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 32 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 33 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.06 0.38 8.14 -51.92 -0.42 -0.04 16 35 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 36 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 37 H 0.12 0.31 8.14 -51.93 -0.42 -0.12 16 38 H 0.13 3.42 6.11 -52.49 -0.32 3.10 16 LS Contribution 341.81 15.07 5.15 5.15 Total: -1.00 -35.67 341.81 -7.60 -43.28 By element: Atomic # 1 Polarization: 16.39 SS G_CDS: -4.38 Total: 12.01 kcal Atomic # 6 Polarization: 10.48 SS G_CDS: -3.20 Total: 7.28 kcal Atomic # 7 Polarization: -59.58 SS G_CDS: 0.05 Total: -59.53 kcal Atomic # 8 Polarization: -16.95 SS G_CDS: -0.28 Total: -17.23 kcal Atomic # 9 Polarization: -4.26 SS G_CDS: 0.08 Total: -4.18 kcal Atomic # 14 Polarization: 18.25 SS G_CDS: -5.03 Total: 13.22 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -35.67 -7.60 -43.28 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871729387.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.404 kcal (2) G-P(sol) polarization free energy of solvation -35.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds