Wall clock time and date at job start Fri Apr 10 2020 23:07:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30737 * 1 3 3 Si 1.86794 * 120.00631 * 2 1 4 4 H 1.48500 * 109.47595 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47067 * 300.00373 * 3 2 1 6 6 H 1.48505 * 109.46928 * 59.99663 * 3 2 1 7 7 C 1.40034 * 119.99823 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00012 * 170.10403 * 7 2 1 9 9 C 1.41550 * 119.99833 * 350.11068 * 7 2 1 10 10 C 1.41160 * 120.99582 * 153.79387 * 9 7 2 11 11 C 1.36589 * 119.12658 * 180.02562 * 10 9 7 12 12 N 1.32065 * 121.26146 * 0.02562 * 11 10 9 13 13 C 1.32495 * 122.22739 * 359.65763 * 12 11 10 14 14 N 1.39455 * 119.65157 * 180.32145 * 13 12 11 15 15 C 1.34775 * 120.00101 * 5.66783 * 14 13 12 16 16 O 1.21583 * 119.99860 * 5.06444 * 15 14 13 17 17 N 1.34776 * 120.00231 * 185.06533 * 15 14 13 18 18 C 1.46504 * 119.99671 * 180.02562 * 17 15 14 19 19 C 1.53000 * 109.47004 * 179.97438 * 18 17 15 20 20 O 1.42900 * 109.47175 * 64.99621 * 19 18 17 21 21 C 1.42899 * 114.00187 * 180.02562 * 20 19 18 22 22 C 1.53001 * 109.47486 * 180.02562 * 21 20 19 23 23 F 1.39899 * 109.46861 * 299.99977 * 22 21 20 24 24 F 1.39893 * 109.47119 * 59.99428 * 22 21 20 25 25 C 1.38646 * 120.70098 * 0.63151 * 13 12 11 26 26 H 0.97006 * 119.99686 * 359.97438 * 1 2 3 27 27 H 1.07998 * 120.43978 * 0.02562 * 10 9 7 28 28 H 1.08004 * 119.37253 * 180.02562 * 11 10 9 29 29 H 0.97002 * 120.00252 * 185.67620 * 14 13 12 30 30 H 0.96993 * 120.00327 * 359.97438 * 17 15 14 31 31 H 1.09003 * 109.47135 * 299.99459 * 18 17 15 32 32 H 1.08997 * 109.47418 * 60.00233 * 18 17 15 33 33 H 1.08997 * 109.47448 * 185.00129 * 19 18 17 34 34 H 1.09007 * 109.47163 * 305.00258 * 19 18 17 35 35 H 1.09002 * 109.47256 * 300.00015 * 21 20 19 36 36 H 1.09003 * 109.47248 * 59.99949 * 21 20 19 37 37 H 1.08996 * 109.47246 * 179.97438 * 22 21 20 38 38 H 1.08002 * 120.66382 * 179.68680 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6176 0.0000 4 1 3.7015 1.3462 0.0006 5 1 1.8828 2.3964 -1.2125 6 1 1.8827 2.3963 1.2125 7 6 2.0075 -1.2127 0.0005 8 1 3.0754 -1.2198 -0.1602 9 6 1.3154 -2.4294 0.2116 10 6 1.8138 -3.6472 -0.2993 11 6 1.1146 -4.7987 -0.0734 12 7 -0.0146 -4.7916 0.6114 13 6 -0.5260 -3.6799 1.1193 14 7 -1.7189 -3.7355 1.8395 15 6 -2.2856 -4.9271 2.1138 16 8 -1.7117 -5.9564 1.8148 17 7 -3.4885 -4.9778 2.7197 18 6 -4.1041 -6.2732 3.0183 19 6 -5.4547 -6.0505 3.7018 20 8 -6.3491 -5.4078 2.7913 21 6 -7.6461 -5.1518 3.3338 22 6 -8.5146 -4.4658 2.2774 23 9 -7.9207 -3.2571 1.8987 24 9 -8.6327 -5.2978 1.1589 25 6 0.1089 -2.4609 0.9370 26 1 -0.4850 0.8401 0.0004 27 1 2.7356 -3.6684 -0.8615 28 1 1.4924 -5.7328 -0.4622 29 1 -2.1409 -2.9164 2.1429 30 1 -3.9462 -4.1567 2.9586 31 1 -4.2526 -6.8273 2.0914 32 1 -3.4514 -6.8416 3.6809 33 1 -5.8720 -7.0112 4.0038 34 1 -5.3175 -5.4214 4.5813 35 1 -8.1091 -6.0937 3.6284 36 1 -7.5540 -4.5039 4.2055 37 1 -9.5040 -4.2711 2.6910 38 1 -0.3111 -1.5543 1.3471 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871729387.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:07:23 Heat of formation + Delta-G solvation = -162.300653 kcal Electronic energy + Delta-G solvation = -25270.769607 eV Core-core repulsion = 20976.353608 eV Total energy + Delta-G solvation = -4294.415999 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.118 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -49.81076 -47.88508 -41.40229 -39.90099 -39.01892 -36.24971 -35.63538 -35.47510 -32.43550 -31.72067 -30.46924 -29.15645 -27.89883 -24.33035 -23.81627 -23.77304 -22.94220 -21.73663 -19.67809 -19.41149 -18.79813 -18.37149 -17.91610 -17.53453 -17.17535 -17.09737 -16.73290 -16.32859 -16.04706 -15.93101 -15.76325 -15.13595 -14.82064 -14.65629 -14.60785 -14.39615 -14.29795 -14.26119 -13.77909 -13.36668 -13.15293 -13.04618 -12.85832 -12.68545 -12.31838 -12.08431 -11.85071 -11.78084 -11.50923 -11.30371 -11.18131 -10.74107 -10.09307 -9.90301 -9.61838 -8.84226 -8.56278 -6.56766 0.84229 1.01511 1.42417 1.56879 1.57700 1.64997 2.21753 2.28142 2.39277 2.86242 3.03437 3.21643 3.43391 3.63936 3.77329 3.86743 4.13599 4.18473 4.21565 4.37730 4.46191 4.58245 4.66114 4.71956 4.85522 4.86363 4.94505 5.11403 5.25896 5.48634 5.51610 5.66829 5.84419 5.99767 6.04492 6.28172 6.57777 6.80895 6.84657 6.99137 7.61858 7.90232 8.30863 Molecular weight = 315.12amu Principal moments of inertia in cm(-1) A = 0.014909 B = 0.002809 C = 0.002476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1877.604694 B = 9963.984729 C =11305.344871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.818 5.818 2 C 0.035 3.965 3 Si 0.992 3.008 4 H -0.258 1.258 5 H -0.267 1.267 6 H -0.262 1.262 7 C -0.482 4.482 8 H 0.084 0.916 9 C 0.113 3.887 10 C -0.296 4.296 11 C 0.112 3.888 12 N -0.580 5.580 13 C 0.351 3.649 14 N -0.662 5.662 15 C 0.689 3.311 16 O -0.583 6.583 17 N -0.728 5.728 18 C 0.138 3.862 19 C 0.061 3.939 20 O -0.410 6.410 21 C 0.004 3.996 22 C 0.253 3.747 23 F -0.223 7.223 24 F -0.224 7.224 25 C -0.259 4.259 26 H 0.291 0.709 27 H 0.117 0.883 28 H 0.148 0.852 29 H 0.419 0.581 30 H 0.409 0.591 31 H 0.050 0.950 32 H 0.087 0.913 33 H 0.098 0.902 34 H 0.084 0.916 35 H 0.107 0.893 36 H 0.107 0.893 37 H 0.173 0.827 38 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.681 -3.666 11.912 22.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.444 5.444 2 C -0.181 4.181 3 Si 0.812 3.188 4 H -0.182 1.182 5 H -0.192 1.192 6 H -0.186 1.186 7 C -0.512 4.512 8 H 0.102 0.898 9 C 0.105 3.895 10 C -0.320 4.320 11 C -0.041 4.041 12 N -0.300 5.300 13 C 0.124 3.876 14 N -0.311 5.311 15 C 0.388 3.612 16 O -0.458 6.458 17 N -0.386 5.386 18 C 0.014 3.986 19 C -0.015 4.015 20 O -0.331 6.331 21 C -0.072 4.072 22 C 0.201 3.799 23 F -0.205 7.205 24 F -0.206 7.206 25 C -0.285 4.285 26 H 0.102 0.898 27 H 0.135 0.865 28 H 0.166 0.834 29 H 0.256 0.744 30 H 0.244 0.756 31 H 0.069 0.931 32 H 0.105 0.895 33 H 0.116 0.884 34 H 0.102 0.898 35 H 0.125 0.875 36 H 0.125 0.875 37 H 0.190 0.810 38 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -18.848 -5.272 11.579 22.741 hybrid contribution 0.440 2.060 -0.210 2.117 sum -18.409 -3.212 11.370 21.874 Atomic orbital electron populations 1.69799 1.08962 1.30696 1.34938 1.26851 0.95702 1.04629 0.90918 0.85008 0.79223 0.75590 0.78964 1.18156 1.19171 1.18628 1.19898 0.96200 0.90853 1.44291 0.89784 1.18033 0.91116 0.93392 0.86974 1.21873 1.05016 0.94297 1.10765 1.21923 0.90234 0.97643 0.94275 1.67299 1.15688 1.28927 1.18130 1.18196 0.86712 0.90405 0.92323 1.42453 1.23353 1.08684 1.56616 1.16281 0.81979 0.83709 0.79218 1.90960 1.64103 1.33320 1.57405 1.44960 1.18247 1.10726 1.64717 1.21343 0.92593 0.84157 1.00503 1.22875 0.87334 0.99438 0.91841 1.88015 1.23225 1.80833 1.40992 1.23951 0.84084 1.03009 0.96194 1.22846 0.99787 0.74787 0.82518 1.92978 1.86974 1.47723 1.92828 1.92967 1.97170 1.72919 1.57535 1.21599 1.01603 0.95542 1.09744 0.89827 0.86487 0.83449 0.74396 0.75551 0.93150 0.89475 0.88366 0.89793 0.87543 0.87541 0.80989 0.85315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -40.92 10.70 21.84 0.23 -40.69 16 2 C 0.04 1.70 5.31 85.29 0.45 2.15 16 3 Si 0.99 36.58 29.57 68.60 2.03 38.61 16 4 H -0.26 -9.35 7.11 99.48 0.71 -8.65 16 5 H -0.27 -9.51 7.11 99.48 0.71 -8.80 16 6 H -0.26 -9.17 7.11 99.48 0.71 -8.46 16 7 C -0.48 -25.42 9.14 23.52 0.21 -25.21 16 8 H 0.08 4.24 7.87 -2.91 -0.02 4.22 16 9 C 0.11 6.23 5.60 -21.11 -0.12 6.11 16 10 C -0.30 -15.19 9.85 22.60 0.22 -14.96 16 11 C 0.11 5.70 11.10 84.27 0.94 6.63 16 12 N -0.58 -31.69 7.90 -194.27 -1.53 -33.22 16 13 C 0.35 18.18 7.41 132.76 0.98 19.17 16 14 N -0.66 -27.96 5.40 -322.36 -1.74 -29.70 16 15 C 0.69 28.25 8.51 179.05 1.52 29.77 16 16 O -0.58 -29.27 14.64 -3.98 -0.06 -29.33 16 17 N -0.73 -20.85 5.51 -478.53 -2.64 -23.49 16 18 C 0.14 3.20 6.06 86.38 0.52 3.72 16 19 C 0.06 0.82 6.07 71.98 0.44 1.26 16 20 O -0.41 -7.53 10.18 -148.98 -1.52 -9.04 16 21 C 0.00 0.04 6.16 71.98 0.44 0.48 16 22 C 0.25 3.14 5.63 71.98 0.41 3.55 16 23 F -0.22 -4.65 17.28 44.97 0.78 -3.88 16 24 F -0.22 -4.61 17.28 44.97 0.78 -3.84 16 25 C -0.26 -13.85 8.62 23.00 0.20 -13.65 16 26 H 0.29 12.98 8.29 -92.70 -0.77 12.21 16 27 H 0.12 5.45 8.06 -2.91 -0.02 5.43 16 28 H 0.15 6.45 8.06 -2.91 -0.02 6.43 16 29 H 0.42 14.55 8.72 -92.71 -0.81 13.74 16 30 H 0.41 9.41 8.49 -92.71 -0.79 8.62 16 31 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 33 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.08 0.75 8.14 -2.38 -0.02 0.73 16 35 H 0.11 0.40 8.14 -2.39 -0.02 0.38 16 36 H 0.11 0.41 8.14 -2.39 -0.02 0.39 16 37 H 0.17 0.29 8.14 -2.39 -0.02 0.27 16 38 H 0.13 6.82 6.11 -2.91 -0.02 6.81 16 Total: -1.00 -80.21 341.81 2.09 -78.12 By element: Atomic # 1 Polarization: 37.88 SS G_CDS: -0.47 Total: 37.41 kcal Atomic # 6 Polarization: 12.80 SS G_CDS: 6.22 Total: 19.02 kcal Atomic # 7 Polarization: -121.41 SS G_CDS: -5.68 Total: -127.09 kcal Atomic # 8 Polarization: -36.79 SS G_CDS: -1.57 Total: -38.37 kcal Atomic # 9 Polarization: -9.27 SS G_CDS: 1.55 Total: -7.71 kcal Atomic # 14 Polarization: 36.58 SS G_CDS: 2.03 Total: 38.61 kcal Total: -80.21 2.09 -78.12 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871729387.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.178 kcal (2) G-P(sol) polarization free energy of solvation -80.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds