Wall clock time and date at job start Fri Apr 10 2020 23:07:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30743 * 1 3 3 Si 1.86801 * 119.99941 * 2 1 4 4 H 1.48497 * 109.46987 * 240.00085 * 3 2 1 5 5 H 1.48502 * 109.46828 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46928 * 119.99699 * 3 2 1 7 7 C 1.40030 * 119.99956 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00147 * 192.10588 * 7 2 1 9 9 C 1.41544 * 120.00045 * 12.11539 * 7 2 1 10 10 C 1.41159 * 120.99878 * 201.11678 * 9 7 2 11 11 C 1.36591 * 119.12979 * 180.02562 * 10 9 7 12 12 N 1.32069 * 121.25808 * 359.74900 * 11 10 9 13 13 C 1.32487 * 122.22642 * 0.52631 * 12 11 10 14 14 N 1.39466 * 119.64744 * 179.74987 * 13 12 11 15 15 C 1.34779 * 119.99735 * 6.01623 * 14 13 12 16 16 O 1.21574 * 120.00091 * 355.45594 * 15 14 13 17 17 N 1.34775 * 119.99888 * 175.17880 * 15 14 13 18 18 C 1.46504 * 120.00198 * 180.27580 * 17 15 14 19 19 C 1.52995 * 109.47183 * 180.02562 * 18 17 15 20 20 C 1.53003 * 109.46926 * 180.02562 * 19 18 17 21 21 O 1.42902 * 109.47007 * 179.97438 * 20 19 18 22 22 C 1.42897 * 114.00049 * 179.97438 * 21 20 19 23 23 F 1.39898 * 109.47300 * 300.00498 * 22 21 20 24 24 F 1.39907 * 109.46747 * 60.00364 * 22 21 20 25 25 C 1.38642 * 120.70586 * 359.47545 * 13 12 11 26 26 H 0.96996 * 120.00359 * 359.97438 * 1 2 3 27 27 H 1.08000 * 120.43838 * 0.02562 * 10 9 7 28 28 H 1.08002 * 119.37343 * 180.02562 * 11 10 9 29 29 H 0.97000 * 120.00244 * 186.01156 * 14 13 12 30 30 H 0.97000 * 119.99958 * 0.27662 * 17 15 14 31 31 H 1.08994 * 109.46707 * 299.99950 * 18 17 15 32 32 H 1.08998 * 109.47197 * 59.99787 * 18 17 15 33 33 H 1.09008 * 109.47257 * 299.99700 * 19 18 17 34 34 H 1.08998 * 109.47400 * 59.99700 * 19 18 17 35 35 H 1.08994 * 109.46784 * 299.99630 * 20 19 18 36 36 H 1.08998 * 109.47377 * 59.99624 * 20 19 18 37 37 H 1.09000 * 109.47392 * 179.97438 * 22 21 20 38 38 H 1.08000 * 120.66368 * 180.27697 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 3.0951 1.6964 -1.2125 5 1 1.2763 2.7464 0.0006 6 1 3.0951 1.6964 1.2125 7 6 2.0076 -1.2127 0.0005 8 1 3.0695 -1.2230 0.1967 9 6 1.3235 -2.4250 -0.2562 10 6 1.8595 -3.6638 0.1569 11 6 1.1673 -4.8104 -0.1113 12 7 0.0080 -4.7791 -0.7432 13 6 -0.5400 -3.6466 -1.1584 14 7 -1.7644 -3.6766 -1.8253 15 6 -2.4422 -4.8361 -1.9381 16 8 -1.9490 -5.8704 -1.5317 17 7 -3.6689 -4.8481 -2.4962 18 6 -4.4081 -6.1076 -2.6132 19 6 -5.7610 -5.8450 -3.2777 20 6 -6.5332 -7.1602 -3.3994 21 8 -7.7971 -6.9149 -4.0195 22 6 -8.6016 -8.0846 -4.1821 23 9 -7.9223 -9.0104 -4.9813 24 9 -8.8596 -8.6509 -2.9290 25 6 0.0881 -2.4315 -0.9320 26 1 -0.4850 0.8400 0.0004 27 1 2.8046 -3.7045 0.6781 28 1 1.5736 -5.7603 0.2034 29 1 -2.1284 -2.8629 -2.2080 30 1 -4.0623 -4.0229 -2.8203 31 1 -3.8360 -6.8096 -3.2197 32 1 -4.5662 -6.5297 -1.6208 33 1 -6.3334 -5.1427 -2.6715 34 1 -5.6025 -5.4231 -4.2702 35 1 -5.9611 -7.8627 -4.0053 36 1 -6.6916 -7.5817 -2.4068 37 1 -9.5436 -7.8143 -4.6591 38 1 -0.3614 -1.5083 -1.2668 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871730274.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:07:26 Heat of formation + Delta-G solvation = -152.973114 kcal Electronic energy + Delta-G solvation = -24705.403873 eV Core-core repulsion = 20411.392347 eV Total energy + Delta-G solvation = -4294.011527 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.118 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.47619 -47.59199 -39.79959 -38.46013 -37.97663 -35.40947 -34.23420 -33.72493 -31.92850 -30.46143 -28.58322 -26.71472 -26.00129 -24.71214 -22.28737 -21.90035 -21.51066 -20.05899 -18.80135 -18.29756 -18.19559 -17.85586 -17.64160 -16.26371 -16.15339 -15.46217 -15.13525 -15.04853 -14.48216 -14.38530 -14.18384 -14.14486 -13.96116 -13.68501 -13.65740 -13.42322 -12.83734 -12.64950 -12.61135 -12.37912 -12.02359 -11.73665 -11.70703 -11.42039 -11.17990 -10.88879 -10.76748 -10.30078 -10.10675 -9.76419 -9.58922 -9.38341 -8.83854 -7.97446 -7.71447 -6.98506 -6.74890 -4.62753 2.43807 2.71740 2.82760 2.99753 3.02776 3.05245 3.26931 3.30516 3.83527 3.87575 4.06948 4.30847 4.48660 4.57925 4.70646 4.73873 4.74952 5.03219 5.19443 5.38772 5.73080 5.76971 5.81754 5.99010 6.09169 6.56084 6.62870 6.67894 6.82769 6.94417 7.17930 7.29170 7.45947 7.51267 7.88967 8.12230 8.39633 8.48184 8.74572 8.76585 9.18726 9.76249 10.06474 Molecular weight = 315.12amu Principal moments of inertia in cm(-1) A = 0.028341 B = 0.002030 C = 0.001925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.745021 B =13789.438932 C =14539.413860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.791 5.791 2 C 0.074 3.926 3 Si 0.915 3.085 4 H -0.263 1.263 5 H -0.278 1.278 6 H -0.264 1.264 7 C -0.449 4.449 8 H 0.081 0.919 9 C 0.139 3.861 10 C -0.285 4.285 11 C 0.119 3.881 12 N -0.554 5.554 13 C 0.353 3.647 14 N -0.667 5.667 15 C 0.691 3.309 16 O -0.533 6.533 17 N -0.755 5.755 18 C 0.145 3.855 19 C -0.127 4.127 20 C 0.051 3.949 21 O -0.386 6.386 22 C 0.406 3.594 23 F -0.209 7.209 24 F -0.209 7.209 25 C -0.250 4.250 26 H 0.281 0.719 27 H 0.101 0.899 28 H 0.122 0.878 29 H 0.404 0.596 30 H 0.392 0.608 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.168 0.832 38 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.655 -6.529 -8.869 19.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.417 5.417 2 C -0.144 4.144 3 Si 0.740 3.260 4 H -0.188 1.188 5 H -0.203 1.203 6 H -0.189 1.189 7 C -0.480 4.480 8 H 0.099 0.901 9 C 0.131 3.869 10 C -0.309 4.309 11 C -0.035 4.035 12 N -0.273 5.273 13 C 0.127 3.873 14 N -0.315 5.315 15 C 0.391 3.609 16 O -0.404 6.404 17 N -0.414 5.414 18 C 0.020 3.980 19 C -0.165 4.165 20 C -0.025 4.025 21 O -0.307 6.307 22 C 0.315 3.685 23 F -0.191 7.191 24 F -0.191 7.191 25 C -0.276 4.276 26 H 0.092 0.908 27 H 0.119 0.881 28 H 0.139 0.861 29 H 0.238 0.762 30 H 0.226 0.774 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.100 0.900 34 H 0.099 0.901 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.184 0.816 38 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -16.926 -8.047 -8.677 20.653 hybrid contribution 0.431 2.057 -0.006 2.102 sum -16.495 -5.990 -8.683 19.580 Atomic orbital electron populations 1.69728 1.07618 1.29202 1.35159 1.25985 0.94866 1.01558 0.91992 0.86247 0.80003 0.79711 0.80072 1.18753 1.20261 1.18891 1.19580 0.96374 0.90203 1.41864 0.90084 1.17582 0.90513 0.92266 0.86569 1.21641 1.03601 0.94073 1.11583 1.21466 0.90316 0.96692 0.95011 1.67198 1.13269 1.27533 1.19348 1.17996 0.85018 0.90813 0.93476 1.42533 1.20650 1.09920 1.58361 1.16061 0.80474 0.84754 0.79637 1.91014 1.67617 1.30565 1.51174 1.45102 1.17786 1.10601 1.67865 1.20872 0.89972 0.86208 1.00926 1.21662 0.95186 0.96786 1.02835 1.22593 0.82886 0.98909 0.98110 1.88382 1.30890 1.30847 1.80624 1.23156 0.92495 0.76528 0.76349 1.93072 1.83015 1.68966 1.74051 1.93076 1.94379 1.86320 1.45320 1.21780 1.00724 0.95597 1.09497 0.90764 0.88100 0.86077 0.76158 0.77434 0.91456 0.91429 0.90020 0.90052 0.91198 0.91184 0.81572 0.84312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.26 10.50 55.55 0.58 -18.68 16 2 C 0.07 1.78 5.31 -17.34 -0.09 1.69 16 3 Si 0.92 17.80 29.58 -169.99 -5.03 12.78 16 4 H -0.26 -5.08 7.11 56.52 0.40 -4.68 16 5 H -0.28 -5.24 7.11 56.52 0.40 -4.84 16 6 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 7 C -0.45 -11.51 9.15 -37.65 -0.34 -11.86 16 8 H 0.08 1.98 7.88 -52.49 -0.41 1.57 16 9 C 0.14 3.68 5.65 -106.55 -0.60 3.08 16 10 C -0.28 -7.07 9.85 -39.07 -0.38 -7.45 16 11 C 0.12 2.91 11.10 -18.04 -0.20 2.71 16 12 N -0.55 -14.50 7.86 -12.75 -0.10 -14.60 16 13 C 0.35 8.70 7.42 -154.68 -1.15 7.55 16 14 N -0.67 -13.25 5.40 -15.86 -0.09 -13.34 16 15 C 0.69 13.42 8.52 -86.92 -0.74 12.68 16 16 O -0.53 -12.78 14.60 5.30 0.08 -12.70 16 17 N -0.75 -10.11 5.56 -65.23 -0.36 -10.47 16 18 C 0.15 1.65 5.67 -4.04 -0.02 1.63 16 19 C -0.13 -1.03 5.70 -26.73 -0.15 -1.18 16 20 C 0.05 0.42 5.66 37.16 0.21 0.63 16 21 O -0.39 -3.11 10.64 -35.23 -0.37 -3.49 16 22 C 0.41 2.55 6.30 101.05 0.64 3.18 16 23 F -0.21 -1.70 16.88 2.25 0.04 -1.66 16 24 F -0.21 -1.71 16.88 2.25 0.04 -1.68 16 25 C -0.25 -6.38 8.67 -38.46 -0.33 -6.71 16 26 H 0.28 6.20 8.29 -40.82 -0.34 5.86 16 27 H 0.10 2.29 8.06 -52.49 -0.42 1.86 16 28 H 0.12 2.60 8.06 -52.49 -0.42 2.18 16 29 H 0.40 6.48 8.72 -40.82 -0.36 6.13 16 30 H 0.39 3.97 8.49 -40.82 -0.35 3.62 16 31 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 32 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 33 H 0.08 0.63 8.14 -51.92 -0.42 0.21 16 34 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.07 0.56 7.73 -51.93 -0.40 0.16 16 36 H 0.07 0.57 7.73 -51.93 -0.40 0.17 16 37 H 0.17 0.32 8.14 -51.93 -0.42 -0.10 16 38 H 0.14 3.49 5.81 -52.49 -0.30 3.19 16 LS Contribution 339.69 15.07 5.12 5.12 Total: -1.00 -33.57 339.69 -7.59 -41.15 By element: Atomic # 1 Polarization: 15.93 SS G_CDS: -4.32 Total: 11.61 kcal Atomic # 6 Polarization: 9.12 SS G_CDS: -3.17 Total: 5.95 kcal Atomic # 7 Polarization: -57.12 SS G_CDS: 0.03 Total: -57.09 kcal Atomic # 8 Polarization: -15.89 SS G_CDS: -0.30 Total: -16.19 kcal Atomic # 9 Polarization: -3.41 SS G_CDS: 0.08 Total: -3.34 kcal Atomic # 14 Polarization: 17.80 SS G_CDS: -5.03 Total: 12.78 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -33.57 -7.59 -41.15 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871730274.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.819 kcal (2) G-P(sol) polarization free energy of solvation -33.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds