Wall clock time and date at job start Fri Apr 10 2020 23:07:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30743 * 1 3 3 Si 1.86801 * 119.99941 * 2 1 4 4 H 1.48497 * 109.46987 * 240.00085 * 3 2 1 5 5 H 1.48502 * 109.46828 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46928 * 119.99699 * 3 2 1 7 7 C 1.40030 * 119.99956 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00147 * 192.10588 * 7 2 1 9 9 C 1.41544 * 120.00045 * 12.11539 * 7 2 1 10 10 C 1.41159 * 120.99878 * 201.11678 * 9 7 2 11 11 C 1.36591 * 119.12979 * 180.02562 * 10 9 7 12 12 N 1.32069 * 121.25808 * 359.74900 * 11 10 9 13 13 C 1.32487 * 122.22642 * 0.52631 * 12 11 10 14 14 N 1.39466 * 119.64744 * 179.74987 * 13 12 11 15 15 C 1.34779 * 119.99735 * 6.01623 * 14 13 12 16 16 O 1.21574 * 120.00091 * 355.45594 * 15 14 13 17 17 N 1.34775 * 119.99888 * 175.17880 * 15 14 13 18 18 C 1.46504 * 120.00198 * 180.27580 * 17 15 14 19 19 C 1.52995 * 109.47183 * 180.02562 * 18 17 15 20 20 C 1.53003 * 109.46926 * 180.02562 * 19 18 17 21 21 O 1.42902 * 109.47007 * 179.97438 * 20 19 18 22 22 C 1.42897 * 114.00049 * 179.97438 * 21 20 19 23 23 F 1.39898 * 109.47300 * 300.00498 * 22 21 20 24 24 F 1.39907 * 109.46747 * 60.00364 * 22 21 20 25 25 C 1.38642 * 120.70586 * 359.47545 * 13 12 11 26 26 H 0.96996 * 120.00359 * 359.97438 * 1 2 3 27 27 H 1.08000 * 120.43838 * 0.02562 * 10 9 7 28 28 H 1.08002 * 119.37343 * 180.02562 * 11 10 9 29 29 H 0.97000 * 120.00244 * 186.01156 * 14 13 12 30 30 H 0.97000 * 119.99958 * 0.27662 * 17 15 14 31 31 H 1.08994 * 109.46707 * 299.99950 * 18 17 15 32 32 H 1.08998 * 109.47197 * 59.99787 * 18 17 15 33 33 H 1.09008 * 109.47257 * 299.99700 * 19 18 17 34 34 H 1.08998 * 109.47400 * 59.99700 * 19 18 17 35 35 H 1.08994 * 109.46784 * 299.99630 * 20 19 18 36 36 H 1.08998 * 109.47377 * 59.99624 * 20 19 18 37 37 H 1.09000 * 109.47392 * 179.97438 * 22 21 20 38 38 H 1.08000 * 120.66368 * 180.27697 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 3.0951 1.6964 -1.2125 5 1 1.2763 2.7464 0.0006 6 1 3.0951 1.6964 1.2125 7 6 2.0076 -1.2127 0.0005 8 1 3.0695 -1.2230 0.1967 9 6 1.3235 -2.4250 -0.2562 10 6 1.8595 -3.6638 0.1569 11 6 1.1673 -4.8104 -0.1113 12 7 0.0080 -4.7791 -0.7432 13 6 -0.5400 -3.6466 -1.1584 14 7 -1.7644 -3.6766 -1.8253 15 6 -2.4422 -4.8361 -1.9381 16 8 -1.9490 -5.8704 -1.5317 17 7 -3.6689 -4.8481 -2.4962 18 6 -4.4081 -6.1076 -2.6132 19 6 -5.7610 -5.8450 -3.2777 20 6 -6.5332 -7.1602 -3.3994 21 8 -7.7971 -6.9149 -4.0195 22 6 -8.6016 -8.0846 -4.1821 23 9 -7.9223 -9.0104 -4.9813 24 9 -8.8596 -8.6509 -2.9290 25 6 0.0881 -2.4315 -0.9320 26 1 -0.4850 0.8400 0.0004 27 1 2.8046 -3.7045 0.6781 28 1 1.5736 -5.7603 0.2034 29 1 -2.1284 -2.8629 -2.2080 30 1 -4.0623 -4.0229 -2.8203 31 1 -3.8360 -6.8096 -3.2197 32 1 -4.5662 -6.5297 -1.6208 33 1 -6.3334 -5.1427 -2.6715 34 1 -5.6025 -5.4231 -4.2702 35 1 -5.9611 -7.8627 -4.0053 36 1 -6.6916 -7.5817 -2.4068 37 1 -9.5436 -7.8143 -4.6591 38 1 -0.3614 -1.5083 -1.2668 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871730274.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:07:25 Heat of formation + Delta-G solvation = -176.283910 kcal Electronic energy + Delta-G solvation = -24706.414705 eV Core-core repulsion = 20411.392347 eV Total energy + Delta-G solvation = -4295.022359 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.118 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -50.02717 -48.15829 -41.39918 -39.85487 -38.97403 -36.62179 -35.98008 -35.48753 -32.98110 -32.34224 -30.29415 -27.93736 -27.48650 -25.46763 -23.81930 -23.43068 -22.76311 -21.69019 -19.67131 -19.40257 -19.30763 -18.75376 -18.62521 -17.77113 -17.10331 -17.08321 -16.35548 -16.24460 -16.01961 -15.92289 -15.45445 -15.13517 -14.93723 -14.68367 -14.67638 -14.52189 -14.33277 -14.27684 -14.06526 -13.27121 -13.14628 -12.85354 -12.71604 -12.66182 -12.56985 -12.44494 -12.03087 -11.90969 -11.52291 -11.39887 -11.30163 -11.17143 -10.11634 -9.91063 -9.61380 -8.81344 -8.57195 -6.56680 0.85840 1.03409 1.42557 1.52574 1.53964 1.61097 2.10063 2.21053 2.27852 2.76336 2.85601 3.22690 3.71547 3.75559 3.79995 3.90160 3.95112 4.04616 4.18862 4.37543 4.39383 4.59374 4.73416 4.87658 4.93839 5.00040 5.02649 5.12631 5.28673 5.44787 5.50595 5.53194 5.67412 5.86144 6.01685 6.28427 6.58813 6.81341 6.85063 7.00693 7.62456 7.92419 8.27723 Molecular weight = 315.12amu Principal moments of inertia in cm(-1) A = 0.028341 B = 0.002030 C = 0.001925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.745021 B =13789.438932 C =14539.413860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.811 5.811 2 C 0.036 3.964 3 Si 0.991 3.009 4 H -0.260 1.260 5 H -0.265 1.265 6 H -0.261 1.261 7 C -0.477 4.477 8 H 0.084 0.916 9 C 0.109 3.891 10 C -0.298 4.298 11 C 0.112 3.888 12 N -0.582 5.582 13 C 0.350 3.650 14 N -0.659 5.659 15 C 0.688 3.312 16 O -0.582 6.582 17 N -0.730 5.730 18 C 0.144 3.856 19 C -0.111 4.111 20 C 0.049 3.951 21 O -0.393 6.393 22 C 0.401 3.599 23 F -0.222 7.222 24 F -0.222 7.222 25 C -0.267 4.267 26 H 0.292 0.708 27 H 0.115 0.885 28 H 0.146 0.854 29 H 0.421 0.579 30 H 0.412 0.588 31 H 0.060 0.940 32 H 0.057 0.943 33 H 0.091 0.909 34 H 0.093 0.907 35 H 0.069 0.931 36 H 0.067 0.933 37 H 0.215 0.785 38 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.833 -5.126 -9.646 20.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.437 5.437 2 C -0.181 4.181 3 Si 0.811 3.189 4 H -0.184 1.184 5 H -0.189 1.189 6 H -0.186 1.186 7 C -0.508 4.508 8 H 0.102 0.898 9 C 0.100 3.900 10 C -0.322 4.322 11 C -0.041 4.041 12 N -0.302 5.302 13 C 0.122 3.878 14 N -0.309 5.309 15 C 0.388 3.612 16 O -0.456 6.456 17 N -0.389 5.389 18 C 0.019 3.981 19 C -0.149 4.149 20 C -0.027 4.027 21 O -0.314 6.314 22 C 0.310 3.690 23 F -0.204 7.204 24 F -0.204 7.204 25 C -0.293 4.293 26 H 0.103 0.897 27 H 0.133 0.867 28 H 0.164 0.836 29 H 0.258 0.742 30 H 0.249 0.751 31 H 0.078 0.922 32 H 0.075 0.925 33 H 0.110 0.890 34 H 0.112 0.888 35 H 0.087 0.913 36 H 0.085 0.915 37 H 0.231 0.769 38 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -18.180 -6.629 -9.492 21.553 hybrid contribution 0.714 1.586 0.229 1.754 sum -17.466 -5.043 -9.263 20.403 Atomic orbital electron populations 1.69756 1.08921 1.30853 1.34166 1.26864 0.95714 1.04653 0.90884 0.85112 0.78662 0.75056 0.80050 1.18378 1.18912 1.18562 1.19883 0.96786 0.91094 1.43021 0.89794 1.18039 0.91383 0.93343 0.87211 1.21822 1.04365 0.93876 1.12153 1.21902 0.90039 0.97761 0.94421 1.67322 1.14104 1.28263 1.20480 1.18215 0.86180 0.90298 0.93058 1.42404 1.19474 1.11115 1.57866 1.16259 0.81679 0.83742 0.79553 1.90978 1.69182 1.32093 1.53372 1.44877 1.15672 1.12414 1.65903 1.20988 0.91338 0.85022 1.00703 1.21490 0.93079 0.97081 1.03206 1.22536 0.83322 0.98752 0.98100 1.88360 1.30696 1.31862 1.80512 1.23936 0.93549 0.75657 0.75876 1.93047 1.83511 1.69524 1.74303 1.93050 1.94399 1.86557 1.46424 1.21777 1.01129 0.95841 1.10556 0.89663 0.86682 0.83637 0.74193 0.75107 0.92180 0.92465 0.89025 0.88812 0.91313 0.91458 0.76897 0.84446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -39.12 10.50 21.84 0.23 -38.89 16 2 C 0.04 1.68 5.31 85.29 0.45 2.13 16 3 Si 0.99 35.46 29.58 68.60 2.03 37.49 16 4 H -0.26 -9.10 7.11 99.48 0.71 -8.40 16 5 H -0.26 -8.86 7.11 99.48 0.71 -8.16 16 6 H -0.26 -9.19 7.11 99.48 0.71 -8.48 16 7 C -0.48 -24.65 9.15 23.52 0.22 -24.43 16 8 H 0.08 4.13 7.88 -2.91 -0.02 4.10 16 9 C 0.11 5.85 5.65 -21.12 -0.12 5.73 16 10 C -0.30 -15.04 9.85 22.60 0.22 -14.82 16 11 C 0.11 5.56 11.10 84.27 0.94 6.49 16 12 N -0.58 -30.94 7.86 -194.26 -1.53 -32.47 16 13 C 0.35 17.50 7.42 132.76 0.98 18.49 16 14 N -0.66 -26.17 5.40 -322.37 -1.74 -27.91 16 15 C 0.69 26.61 8.52 179.05 1.53 28.14 16 16 O -0.58 -28.31 14.60 -3.95 -0.06 -28.36 16 17 N -0.73 -18.66 5.56 -478.56 -2.66 -21.32 16 18 C 0.14 3.15 5.67 86.38 0.49 3.64 16 19 C -0.11 -1.58 5.70 30.59 0.17 -1.41 16 20 C 0.05 0.74 5.66 71.98 0.41 1.14 16 21 O -0.39 -5.55 10.64 -148.98 -1.58 -7.14 16 22 C 0.40 4.25 6.30 113.37 0.71 4.97 16 23 F -0.22 -3.33 16.88 44.97 0.76 -2.57 16 24 F -0.22 -3.38 16.88 44.97 0.76 -2.62 16 25 C -0.27 -13.87 8.67 23.00 0.20 -13.67 16 26 H 0.29 12.55 8.29 -92.71 -0.77 11.78 16 27 H 0.12 5.28 8.06 -2.91 -0.02 5.25 16 28 H 0.15 6.27 8.06 -2.91 -0.02 6.25 16 29 H 0.42 13.24 8.72 -92.71 -0.81 12.43 16 30 H 0.41 7.43 8.49 -92.71 -0.79 6.64 16 31 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.09 1.18 8.14 -2.38 -0.02 1.16 16 34 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.07 1.04 7.73 -2.39 -0.02 1.02 16 36 H 0.07 1.04 7.73 -2.39 -0.02 1.02 16 37 H 0.22 0.16 8.14 -2.39 -0.02 0.14 16 38 H 0.14 7.02 5.81 -2.91 -0.02 7.01 16 Total: -1.00 -73.62 339.69 1.95 -71.67 By element: Atomic # 1 Polarization: 36.16 SS G_CDS: -0.46 Total: 35.70 kcal Atomic # 6 Polarization: 10.20 SS G_CDS: 6.20 Total: 16.41 kcal Atomic # 7 Polarization: -114.89 SS G_CDS: -5.70 Total: -120.58 kcal Atomic # 8 Polarization: -33.86 SS G_CDS: -1.64 Total: -35.50 kcal Atomic # 9 Polarization: -6.70 SS G_CDS: 1.52 Total: -5.18 kcal Atomic # 14 Polarization: 35.46 SS G_CDS: 2.03 Total: 37.49 kcal Total: -73.62 1.95 -71.67 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871730274.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.611 kcal (2) G-P(sol) polarization free energy of solvation -73.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds