Wall clock time and date at job start Fri Apr 10 2020 23:07:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30749 * 1 3 3 Si 1.86794 * 119.99913 * 2 1 4 4 H 1.48498 * 109.47478 * 269.99937 * 3 2 1 5 5 H 1.48496 * 109.47415 * 30.00455 * 3 2 1 6 6 H 1.48509 * 109.46825 * 150.00394 * 3 2 1 7 7 C 1.40029 * 119.99762 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00040 * 179.81695 * 7 2 1 9 9 C 1.41547 * 120.00190 * 359.81426 * 7 2 1 10 10 C 1.41162 * 120.99914 * 147.45131 * 9 7 2 11 11 C 1.36590 * 119.12624 * 180.02562 * 10 9 7 12 12 N 1.32062 * 121.25982 * 359.97438 * 11 10 9 13 13 C 1.32492 * 122.23388 * 0.02562 * 12 11 10 14 14 N 1.39453 * 119.65116 * 180.27762 * 13 12 11 15 15 C 1.34782 * 120.00218 * 353.94465 * 14 13 12 16 16 O 1.21583 * 119.99547 * 355.05791 * 15 14 13 17 17 N 1.34772 * 120.00456 * 175.05981 * 15 14 13 18 18 C 1.46502 * 120.00117 * 179.97438 * 17 15 14 19 19 H 1.08998 * 109.46883 * 325.00182 * 18 17 15 20 20 C 1.52999 * 109.46827 * 85.00185 * 18 17 15 21 21 O 1.42900 * 109.47450 * 64.99886 * 20 18 17 22 22 C 1.52997 * 109.46781 * 205.00130 * 18 17 15 23 23 C 1.52992 * 109.47532 * 65.00263 * 22 18 17 24 24 F 1.39900 * 109.47432 * 174.99829 * 23 22 18 25 25 F 1.39898 * 109.47126 * 294.99803 * 23 22 18 26 26 C 1.38643 * 120.70116 * 0.02562 * 13 12 11 27 27 H 0.97002 * 119.99985 * 359.97438 * 1 2 3 28 28 H 1.08000 * 120.43595 * 359.97438 * 10 9 7 29 29 H 1.08000 * 119.36468 * 179.97438 * 11 10 9 30 30 H 0.96998 * 120.00355 * 173.94455 * 14 13 12 31 31 H 0.97006 * 119.99677 * 359.97438 * 17 15 14 32 32 H 1.08998 * 109.46673 * 185.00108 * 20 18 17 33 33 H 1.08999 * 109.47497 * 304.99623 * 20 18 17 34 34 H 0.96696 * 113.99780 * 179.97438 * 21 20 18 35 35 H 1.09003 * 109.46563 * 185.00173 * 22 18 17 36 36 H 1.08998 * 109.47312 * 304.99723 * 22 18 17 37 37 H 1.09002 * 109.47242 * 54.99485 * 23 22 18 38 38 H 1.07994 * 120.66320 * 180.02562 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 2.4890 2.0464 -1.4000 5 1 1.4390 2.6526 0.7001 6 1 3.5391 1.4400 0.7000 7 6 2.0076 -1.2127 -0.0005 8 1 3.0875 -1.2128 -0.0035 9 6 1.2998 -2.4385 0.0029 10 6 1.8178 -3.5789 -0.6482 11 6 1.1024 -4.7422 -0.6213 12 7 -0.0599 -4.8177 0.0011 13 6 -0.5942 -3.7803 0.6286 14 7 -1.8224 -3.9219 1.2736 15 6 -2.5175 -5.0706 1.1550 16 8 -2.1186 -5.9487 0.4147 17 7 -3.6546 -5.2458 1.8568 18 6 -4.4103 -6.4942 1.7274 19 1 -4.3381 -6.8579 0.7024 20 6 -3.8329 -7.5412 2.6820 21 8 -4.0325 -7.1166 4.0319 22 6 -5.8781 -6.2402 2.0763 23 6 -6.4898 -5.2882 1.0466 24 9 -7.8585 -5.1456 1.2985 25 9 -5.8663 -4.0392 1.1381 26 6 0.0573 -2.5567 0.6551 27 1 -0.4850 0.8401 0.0004 28 1 2.7668 -3.5320 -1.1616 29 1 1.4949 -5.6169 -1.1185 30 1 -2.1766 -3.1938 1.8077 31 1 -3.9726 -4.5453 2.4477 32 1 -4.3362 -8.4947 2.5228 33 1 -2.7660 -7.6573 2.4917 34 1 -3.6905 -7.7340 4.6929 35 1 -6.4225 -7.1845 2.0665 36 1 -5.9437 -5.7933 3.0683 37 1 -6.3450 -5.6941 0.0454 38 1 -0.3786 -1.7116 1.1671 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871730956.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:07:27 Heat of formation + Delta-G solvation = -168.535411 kcal Electronic energy + Delta-G solvation = -26209.641872 eV Core-core repulsion = 21914.955513 eV Total energy + Delta-G solvation = -4294.686359 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.118 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.88242 -47.90515 -41.46002 -39.99089 -38.32208 -36.19399 -35.78261 -35.43738 -32.83691 -32.32509 -30.27076 -28.82094 -27.87545 -24.66988 -23.88173 -23.65446 -22.11678 -21.57884 -19.67341 -19.43744 -18.59740 -18.27193 -18.12448 -17.79211 -17.22969 -16.93664 -16.49777 -16.15827 -16.03232 -15.85689 -15.33178 -15.00551 -14.87075 -14.68507 -14.62704 -14.32915 -14.25212 -14.21369 -13.63027 -13.24056 -13.21335 -13.05001 -12.83573 -12.67387 -12.27160 -12.11266 -11.86102 -11.78746 -11.47368 -11.28290 -11.18124 -10.91565 -10.06540 -9.81289 -9.65058 -8.80975 -8.52977 -6.57671 0.83712 1.02829 1.42002 1.55150 1.56208 1.64313 2.22396 2.29799 2.83067 2.87920 3.14364 3.33499 3.39183 3.49217 3.72905 3.75374 4.14274 4.18527 4.22033 4.40301 4.53134 4.67833 4.72474 4.79107 4.85866 4.92492 4.99197 5.12343 5.27717 5.50627 5.54393 5.67953 5.84953 6.02295 6.29067 6.58188 6.81393 6.86741 6.87699 6.97952 7.62320 7.88743 8.35300 Molecular weight = 315.12amu Principal moments of inertia in cm(-1) A = 0.017187 B = 0.003307 C = 0.002966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1628.716604 B = 8463.606657 C = 9438.031737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.829 5.829 2 C 0.034 3.966 3 Si 0.992 3.008 4 H -0.265 1.265 5 H -0.267 1.267 6 H -0.257 1.257 7 C -0.489 4.489 8 H 0.083 0.917 9 C 0.115 3.885 10 C -0.290 4.290 11 C 0.111 3.889 12 N -0.570 5.570 13 C 0.351 3.649 14 N -0.663 5.663 15 C 0.695 3.305 16 O -0.578 6.578 17 N -0.723 5.723 18 C 0.164 3.836 19 H 0.100 0.900 20 C 0.071 3.929 21 O -0.580 6.580 22 C -0.157 4.157 23 C 0.253 3.747 24 F -0.215 7.215 25 F -0.219 7.219 26 C -0.253 4.253 27 H 0.288 0.712 28 H 0.118 0.882 29 H 0.151 0.849 30 H 0.417 0.583 31 H 0.406 0.594 32 H 0.088 0.912 33 H 0.028 0.972 34 H 0.396 0.604 35 H 0.140 0.860 36 H 0.099 0.901 37 H 0.128 0.872 38 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.601 -9.391 6.777 17.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.456 5.456 2 C -0.181 4.181 3 Si 0.812 3.188 4 H -0.190 1.190 5 H -0.191 1.191 6 H -0.180 1.180 7 C -0.520 4.520 8 H 0.102 0.898 9 C 0.107 3.893 10 C -0.313 4.313 11 C -0.042 4.042 12 N -0.289 5.289 13 C 0.123 3.877 14 N -0.311 5.311 15 C 0.394 3.606 16 O -0.453 6.453 17 N -0.381 5.381 18 C 0.059 3.941 19 H 0.118 0.882 20 C -0.008 4.008 21 O -0.388 6.388 22 C -0.195 4.195 23 C 0.199 3.801 24 F -0.197 7.197 25 F -0.200 7.200 26 C -0.278 4.278 27 H 0.099 0.901 28 H 0.136 0.864 29 H 0.168 0.832 30 H 0.254 0.746 31 H 0.242 0.758 32 H 0.106 0.894 33 H 0.047 0.953 34 H 0.245 0.755 35 H 0.158 0.842 36 H 0.118 0.882 37 H 0.145 0.855 38 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -13.276 -10.371 5.851 17.834 hybrid contribution 0.800 1.902 0.602 2.150 sum -12.477 -8.468 6.453 16.402 Atomic orbital electron populations 1.69788 1.08832 1.30432 1.36504 1.26805 0.95744 1.04476 0.91050 0.85052 0.78898 0.75492 0.79335 1.19029 1.19141 1.18040 1.19835 0.94999 0.90492 1.46701 0.89842 1.18027 0.91406 0.93073 0.86825 1.21948 1.04158 0.95826 1.09407 1.21957 0.89781 0.97008 0.95497 1.67301 1.14274 1.30636 1.16725 1.18193 0.85942 0.90408 0.93114 1.42474 1.19011 1.17216 1.52447 1.16182 0.80888 0.82347 0.81139 1.90954 1.69689 1.42888 1.41797 1.45110 1.24258 1.20547 1.48153 1.20988 0.89413 0.83608 1.00135 0.88176 1.22506 0.99063 0.96895 0.82359 1.86393 1.84211 1.52401 1.15824 1.22807 0.94230 1.02442 0.99985 1.22308 0.73466 0.81058 1.03230 1.92966 1.34250 1.96312 1.96153 1.92964 1.82535 1.46755 1.97787 1.21670 1.00837 0.95483 1.09856 0.90132 0.86423 0.83175 0.74630 0.75838 0.89404 0.95318 0.75480 0.84158 0.88209 0.85481 0.85591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -42.05 10.69 21.84 0.23 -41.82 16 2 C 0.03 1.66 5.41 85.29 0.46 2.12 16 3 Si 0.99 37.09 29.56 68.60 2.03 39.12 16 4 H -0.27 -9.72 7.11 99.48 0.71 -9.01 16 5 H -0.27 -9.48 7.11 99.48 0.71 -8.77 16 6 H -0.26 -9.32 7.11 99.48 0.71 -8.61 16 7 C -0.49 -25.71 9.12 23.52 0.21 -25.49 16 8 H 0.08 4.18 7.85 -2.91 -0.02 4.15 16 9 C 0.12 6.23 5.57 -21.11 -0.12 6.12 16 10 C -0.29 -14.44 9.85 22.60 0.22 -14.22 16 11 C 0.11 5.37 11.10 84.27 0.94 6.31 16 12 N -0.57 -29.57 7.90 -194.28 -1.53 -31.11 16 13 C 0.35 17.60 7.40 132.76 0.98 18.58 16 14 N -0.66 -27.11 5.40 -322.36 -1.74 -28.85 16 15 C 0.69 26.61 8.48 179.05 1.52 28.13 16 16 O -0.58 -26.54 14.30 -3.98 -0.06 -26.60 16 17 N -0.72 -19.45 3.92 -457.82 -1.80 -21.25 16 18 C 0.16 3.31 2.37 44.99 0.11 3.41 16 19 H 0.10 2.18 7.58 -2.39 -0.02 2.16 16 20 C 0.07 1.29 6.85 71.98 0.49 1.78 16 21 O -0.58 -9.75 12.83 -148.98 -1.91 -11.66 16 22 C -0.16 -2.19 4.77 30.59 0.15 -2.04 16 23 C 0.25 4.39 5.29 71.98 0.38 4.77 16 24 F -0.22 -4.23 17.34 44.97 0.78 -3.45 16 25 F -0.22 -5.31 15.42 44.97 0.69 -4.61 16 26 C -0.25 -13.32 8.60 23.00 0.20 -13.12 16 27 H 0.29 13.22 8.29 -92.71 -0.77 12.45 16 28 H 0.12 5.32 8.06 -2.91 -0.02 5.29 16 29 H 0.15 6.20 8.06 -2.91 -0.02 6.17 16 30 H 0.42 14.46 8.72 -92.71 -0.81 13.65 16 31 H 0.41 9.72 7.87 -92.70 -0.73 9.00 16 32 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.03 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.40 3.59 9.12 -74.06 -0.68 2.92 16 35 H 0.14 1.10 8.14 -2.39 -0.02 1.08 16 36 H 0.10 1.53 7.73 -2.39 -0.02 1.51 16 37 H 0.13 1.74 8.14 -2.39 -0.02 1.72 16 38 H 0.13 6.70 6.25 -2.91 -0.02 6.68 16 Total: -1.00 -72.97 335.55 1.17 -71.80 By element: Atomic # 1 Polarization: 43.15 SS G_CDS: -1.06 Total: 42.09 kcal Atomic # 6 Polarization: 10.80 SS G_CDS: 5.54 Total: 16.34 kcal Atomic # 7 Polarization: -118.19 SS G_CDS: -4.84 Total: -123.02 kcal Atomic # 8 Polarization: -36.30 SS G_CDS: -1.97 Total: -38.27 kcal Atomic # 9 Polarization: -9.53 SS G_CDS: 1.47 Total: -8.06 kcal Atomic # 14 Polarization: 37.09 SS G_CDS: 2.03 Total: 39.12 kcal Total: -72.97 1.17 -71.80 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871730956.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.739 kcal (2) G-P(sol) polarization free energy of solvation -72.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds