Wall clock time and date at job start Fri Apr 10 2020 23:07:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30738 * 1 3 3 Si 1.86798 * 119.99861 * 2 1 4 4 H 1.48499 * 109.47448 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47359 * 300.00143 * 3 2 1 6 6 H 1.48506 * 109.47164 * 59.99824 * 3 2 1 7 7 C 1.40026 * 120.00227 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00303 * 192.11280 * 7 2 1 9 9 C 1.41542 * 120.00313 * 12.11507 * 7 2 1 10 10 C 1.41159 * 121.00041 * 201.12553 * 9 7 2 11 11 C 1.36591 * 119.12746 * 180.02562 * 10 9 7 12 12 N 1.32071 * 121.25984 * 359.73688 * 11 10 9 13 13 C 1.32486 * 122.22906 * 0.53043 * 12 11 10 14 14 N 1.39459 * 119.65141 * 179.74498 * 13 12 11 15 15 C 1.34781 * 119.99402 * 6.02269 * 14 13 12 16 16 O 1.21575 * 120.00534 * 355.44942 * 15 14 13 17 17 N 1.34781 * 119.99319 * 175.45388 * 15 14 13 18 18 C 1.46501 * 119.99448 * 179.97438 * 17 15 14 19 19 H 1.09006 * 109.47501 * 34.99739 * 18 17 15 20 20 C 1.53000 * 109.47308 * 274.99879 * 18 17 15 21 21 O 1.42910 * 109.46823 * 295.00324 * 20 18 17 22 22 C 1.53000 * 109.47039 * 154.99856 * 18 17 15 23 23 C 1.52996 * 109.47159 * 294.99881 * 22 18 17 24 24 F 1.39906 * 109.47387 * 294.99812 * 23 22 18 25 25 F 1.39903 * 109.47516 * 175.00026 * 23 22 18 26 26 C 1.38645 * 120.70208 * 359.47401 * 13 12 11 27 27 H 0.96997 * 120.00354 * 0.02562 * 1 2 3 28 28 H 1.07996 * 120.43636 * 0.03255 * 10 9 7 29 29 H 1.08006 * 119.37119 * 180.02562 * 11 10 9 30 30 H 0.96996 * 120.00510 * 186.01226 * 14 13 12 31 31 H 0.96996 * 120.00582 * 359.97438 * 17 15 14 32 32 H 1.08997 * 109.47151 * 54.99548 * 20 18 17 33 33 H 1.08995 * 109.47359 * 175.00452 * 20 18 17 34 34 H 0.96699 * 113.99202 * 179.97438 * 21 20 18 35 35 H 1.09003 * 109.47201 * 174.99616 * 22 18 17 36 36 H 1.08995 * 109.47015 * 55.00017 * 22 18 17 37 37 H 1.09001 * 109.47205 * 55.00150 * 23 22 18 38 38 H 1.08002 * 120.66365 * 180.27194 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2413 1.6177 0.0000 4 1 3.7013 1.3465 0.0006 5 1 1.8826 2.3965 -1.2124 6 1 1.8825 2.3965 1.2125 7 6 2.0076 -1.2126 0.0005 8 1 3.0695 -1.2230 0.1968 9 6 1.3236 -2.4250 -0.2562 10 6 1.8596 -3.6637 0.1571 11 6 1.1675 -4.8103 -0.1111 12 7 0.0082 -4.7791 -0.7430 13 6 -0.5400 -3.6467 -1.1582 14 7 -1.7644 -3.6767 -1.8252 15 6 -2.4420 -4.8363 -1.9378 16 8 -1.9489 -5.8706 -1.5315 17 7 -3.6665 -4.8491 -2.5010 18 6 -4.4029 -6.1096 -2.6239 19 1 -4.1909 -6.7401 -1.7603 20 6 -3.9687 -6.8315 -3.9011 21 8 -4.3517 -6.0572 -5.0396 22 6 -5.9037 -5.8194 -2.6873 23 6 -6.3619 -5.2107 -1.3605 24 9 -6.2102 -6.1533 -0.3378 25 9 -7.7076 -4.8403 -1.4573 26 6 0.0880 -2.4315 -0.9318 27 1 -0.4850 0.8400 -0.0004 28 1 2.8045 -3.7043 0.6785 29 1 1.5738 -5.7602 0.2037 30 1 -2.1283 -2.8631 -2.2079 31 1 -4.0601 -4.0239 -2.8249 32 1 -2.8862 -6.9592 -3.8962 33 1 -4.4496 -7.8085 -3.9477 34 1 -4.1071 -6.4553 -5.8862 35 1 -6.4460 -6.7475 -2.8678 36 1 -6.1042 -5.1181 -3.4972 37 1 -5.7583 -4.3312 -1.1365 38 1 -0.3615 -1.5084 -1.2667 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871730960.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:07:30 Heat of formation + Delta-G solvation = -146.132594 kcal Electronic energy + Delta-G solvation = -26059.903053 eV Core-core repulsion = 21766.188154 eV Total energy + Delta-G solvation = -4293.714900 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.118 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.06318 -47.06620 -40.01121 -38.39954 -37.24095 -35.09965 -34.26038 -33.76238 -31.63224 -30.46821 -28.72550 -27.86463 -26.02358 -23.73847 -22.49205 -21.87580 -20.82910 -20.17752 -18.44177 -17.78963 -17.53960 -17.46802 -17.25942 -16.68307 -15.86382 -15.50841 -15.23575 -14.85448 -14.35401 -14.18205 -14.12982 -14.07247 -13.68143 -13.45047 -13.37644 -13.18958 -12.90358 -12.66013 -12.50388 -12.37055 -11.90496 -11.55464 -11.46492 -11.17191 -11.02522 -10.90950 -10.30787 -10.21513 -10.10749 -9.80206 -9.61910 -9.41447 -8.94203 -7.99205 -7.74318 -7.01289 -6.77070 -4.64474 2.67791 2.78791 2.90349 3.00191 3.05539 3.24027 3.56901 3.78211 3.82843 4.06300 4.13594 4.22906 4.38794 4.52067 4.68685 4.95609 5.07332 5.16495 5.21799 5.43698 5.60509 5.71342 5.73459 5.96136 6.52406 6.58223 6.62260 6.80616 6.92336 7.15940 7.24750 7.39762 7.43366 7.48892 7.87233 8.09568 8.35000 8.46154 8.72502 8.75065 9.13053 9.73181 10.04671 Molecular weight = 315.12amu Principal moments of inertia in cm(-1) A = 0.016537 B = 0.003185 C = 0.002979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1692.757339 B = 8788.345175 C = 9397.804380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.791 5.791 2 C 0.075 3.925 3 Si 0.914 3.086 4 H -0.259 1.259 5 H -0.271 1.271 6 H -0.273 1.273 7 C -0.449 4.449 8 H 0.082 0.918 9 C 0.140 3.860 10 C -0.285 4.285 11 C 0.119 3.881 12 N -0.554 5.554 13 C 0.352 3.648 14 N -0.666 5.666 15 C 0.692 3.308 16 O -0.532 6.532 17 N -0.749 5.749 18 C 0.172 3.828 19 H 0.110 0.890 20 C 0.064 3.936 21 O -0.571 6.571 22 C -0.171 4.171 23 C 0.259 3.741 24 F -0.203 7.203 25 F -0.209 7.209 26 C -0.250 4.250 27 H 0.280 0.720 28 H 0.101 0.899 29 H 0.122 0.878 30 H 0.404 0.596 31 H 0.394 0.606 32 H 0.061 0.939 33 H 0.054 0.946 34 H 0.379 0.621 35 H 0.101 0.899 36 H 0.108 0.892 37 H 0.111 0.889 38 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.437 -5.386 -8.171 15.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.417 5.417 2 C -0.143 4.143 3 Si 0.738 3.262 4 H -0.183 1.183 5 H -0.197 1.197 6 H -0.199 1.199 7 C -0.480 4.480 8 H 0.100 0.900 9 C 0.131 3.869 10 C -0.309 4.309 11 C -0.035 4.035 12 N -0.273 5.273 13 C 0.126 3.874 14 N -0.313 5.313 15 C 0.392 3.608 16 O -0.403 6.403 17 N -0.407 5.407 18 C 0.066 3.934 19 H 0.128 0.872 20 C -0.015 4.015 21 O -0.376 6.376 22 C -0.210 4.210 23 C 0.206 3.794 24 F -0.184 7.184 25 F -0.190 7.190 26 C -0.276 4.276 27 H 0.091 0.909 28 H 0.119 0.881 29 H 0.139 0.861 30 H 0.239 0.761 31 H 0.227 0.773 32 H 0.079 0.921 33 H 0.072 0.928 34 H 0.225 0.775 35 H 0.119 0.881 36 H 0.127 0.873 37 H 0.128 0.872 38 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -11.917 -6.654 -7.434 15.542 hybrid contribution 0.517 1.973 -0.490 2.097 sum -11.400 -4.682 -7.924 14.652 Atomic orbital electron populations 1.69739 1.07641 1.29029 1.35271 1.25977 0.94845 1.01572 0.91952 0.86159 0.80900 0.80475 0.78624 1.18307 1.19653 1.19854 1.19657 0.96435 0.90207 1.41707 0.90005 1.17584 0.90482 0.92269 0.86553 1.21647 1.03605 0.94089 1.11532 1.21459 0.90317 0.96676 0.95024 1.67189 1.13247 1.27486 1.19355 1.17987 0.85014 0.90832 0.93533 1.42534 1.20593 1.09950 1.58263 1.16086 0.80520 0.84806 0.79381 1.91015 1.67255 1.30508 1.51505 1.45257 1.18222 1.10181 1.67087 1.20733 0.88456 0.86455 0.97795 0.87198 1.22651 0.99935 0.93213 0.85724 1.86421 1.83700 1.51060 1.16451 1.22859 0.96713 1.04972 0.96445 1.21961 0.79366 0.91137 0.86981 1.93004 1.95480 1.67752 1.62187 1.92980 1.37227 1.92192 1.96598 1.21788 1.00722 0.95611 1.09450 0.90855 0.88106 0.86092 0.76133 0.77281 0.92066 0.92813 0.77463 0.88086 0.87318 0.87192 0.84324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.12 10.50 55.55 0.58 -18.54 16 2 C 0.07 1.78 5.31 -17.35 -0.09 1.68 16 3 Si 0.91 17.70 29.58 -169.99 -5.03 12.68 16 4 H -0.26 -5.00 7.11 56.52 0.40 -4.60 16 5 H -0.27 -5.15 7.11 56.52 0.40 -4.74 16 6 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 7 C -0.45 -11.43 9.15 -37.65 -0.34 -11.78 16 8 H 0.08 2.00 7.88 -52.49 -0.41 1.59 16 9 C 0.14 3.65 5.65 -106.55 -0.60 3.05 16 10 C -0.28 -6.98 9.85 -39.07 -0.38 -7.36 16 11 C 0.12 2.86 11.10 -18.04 -0.20 2.66 16 12 N -0.55 -14.13 7.86 -12.75 -0.10 -14.23 16 13 C 0.35 8.50 7.42 -154.68 -1.15 7.35 16 14 N -0.67 -12.85 5.40 -15.86 -0.09 -12.93 16 15 C 0.69 12.80 8.49 -86.91 -0.74 12.06 16 16 O -0.53 -12.07 14.26 5.30 0.08 -11.99 16 17 N -0.75 -9.62 4.40 -58.67 -0.26 -9.88 16 18 C 0.17 1.93 2.33 -67.93 -0.16 1.77 16 19 H 0.11 1.46 7.25 -51.93 -0.38 1.08 16 20 C 0.06 0.65 6.85 37.16 0.25 0.90 16 21 O -0.57 -5.19 12.83 -35.23 -0.45 -5.64 16 22 C -0.17 -1.49 4.69 -26.73 -0.13 -1.62 16 23 C 0.26 2.67 5.24 37.16 0.19 2.86 16 24 F -0.20 -2.62 16.93 2.25 0.04 -2.58 16 25 F -0.21 -2.34 17.34 2.25 0.04 -2.30 16 26 C -0.25 -6.29 8.67 -38.45 -0.33 -6.62 16 27 H 0.28 6.11 8.29 -40.82 -0.34 5.77 16 28 H 0.10 2.26 8.06 -52.49 -0.42 1.84 16 29 H 0.12 2.56 8.06 -52.48 -0.42 2.13 16 30 H 0.40 6.37 8.72 -40.82 -0.36 6.01 16 31 H 0.39 4.02 8.62 -40.82 -0.35 3.66 16 32 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 33 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.38 2.01 9.12 45.56 0.42 2.43 16 35 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.11 0.86 7.73 -51.93 -0.40 0.46 16 37 H 0.11 1.04 7.62 -51.93 -0.40 0.65 16 38 H 0.14 3.46 5.81 -52.49 -0.30 3.15 16 LS Contribution 336.74 15.07 5.07 5.07 Total: -1.00 -32.87 336.74 -7.22 -40.09 By element: Atomic # 1 Polarization: 18.73 SS G_CDS: -3.43 Total: 15.30 kcal Atomic # 6 Polarization: 8.64 SS G_CDS: -3.68 Total: 4.96 kcal Atomic # 7 Polarization: -55.72 SS G_CDS: 0.14 Total: -55.58 kcal Atomic # 8 Polarization: -17.26 SS G_CDS: -0.38 Total: -17.63 kcal Atomic # 9 Polarization: -4.96 SS G_CDS: 0.08 Total: -4.88 kcal Atomic # 14 Polarization: 17.70 SS G_CDS: -5.03 Total: 12.68 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -32.87 -7.22 -40.09 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871730960.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.038 kcal (2) G-P(sol) polarization free energy of solvation -32.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds